Wall clock time and date at job start Sat Mar 6 2021 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47099 * 2 1 4 4 C 1.50702 * 109.46828 * 239.99827 * 2 1 3 5 5 C 1.32770 * 124.71483 * 300.27138 * 4 2 1 6 6 C 1.44419 * 113.08416 * 180.18375 * 5 4 2 7 7 C 1.47191 * 123.46114 * 179.80986 * 6 5 4 8 8 O 1.21633 * 119.99989 * 359.72840 * 7 6 5 9 9 N 1.34777 * 119.99772 * 179.72527 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 O 1.42902 * 109.46943 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 18 18 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 19 19 C 1.36011 * 113.07658 * 359.54092 * 6 5 4 20 20 S 1.70447 * 110.81726 * 0.24504 * 19 6 5 21 21 H 0.96701 * 114.00496 * 59.99874 * 1 2 3 22 22 H 1.08997 * 109.47043 * 120.00142 * 2 1 3 23 23 H 1.48497 * 110.00341 * 59.99825 * 3 2 1 24 24 H 1.48495 * 110.00064 * 181.32135 * 3 2 1 25 25 H 1.07998 * 123.45778 * 359.97438 * 5 4 2 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 28 28 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 29 29 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 30 30 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 31 31 H 0.96693 * 114.00111 * 60.00415 * 16 14 13 32 32 H 1.09000 * 109.47291 * 180.02562 * 17 14 13 33 33 H 1.08999 * 109.47531 * 59.99527 * 17 14 13 34 34 H 1.08999 * 109.46935 * 300.00059 * 18 10 9 35 35 H 1.09004 * 109.47138 * 59.99988 * 18 10 9 36 36 H 1.08004 * 124.59174 * 180.21111 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6646 -1.9749 -1.5353 6 6 2.2778 -2.4008 -2.7715 7 6 2.1354 -3.7581 -3.3227 8 8 1.4771 -4.5901 -2.7278 9 7 2.7344 -4.0791 -4.4865 10 6 2.5977 -5.4319 -5.0320 11 1 2.5638 -6.1517 -4.2142 12 6 1.3063 -5.5250 -5.8472 13 6 1.1632 -6.9379 -6.4163 14 6 2.3592 -7.2478 -7.3187 15 1 2.3933 -6.5283 -8.1368 16 8 2.2253 -8.5673 -7.8508 17 6 3.6507 -7.1549 -6.5035 18 6 3.7938 -5.7413 -5.9345 19 6 2.9958 -1.4170 -3.3771 20 16 2.9439 0.0208 -2.4632 21 1 -0.3934 0.4417 -0.7650 22 1 1.7923 -0.5138 0.8900 23 1 1.5615 2.4679 1.2084 24 1 3.5345 1.7703 -0.0322 25 1 1.0546 -2.6197 -0.9202 26 1 3.2597 -3.4158 -4.9608 27 1 0.4541 -5.3045 -5.2043 28 1 1.3402 -4.8051 -6.6650 29 1 0.2433 -7.0040 -6.9975 30 1 1.1290 -7.6574 -5.5983 31 1 1.4269 -8.6987 -8.3802 32 1 4.5029 -7.3752 -7.1464 33 1 3.6166 -7.8744 -5.6855 34 1 3.8277 -5.0215 -6.7522 35 1 4.7139 -5.6750 -5.3537 36 1 3.5272 -1.5316 -4.3103 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11353598_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:55 Heat of formation + Delta-G solvation = -94.840374 kcal Electronic energy + Delta-G solvation = -19997.580656 eV Core-core repulsion = 16767.283312 eV Total energy + Delta-G solvation = -3230.297345 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26554 -39.81343 -38.75849 -37.22979 -36.83874 -34.52454 -31.96542 -31.89079 -29.41068 -27.00470 -25.66399 -23.95356 -23.15680 -21.85156 -21.27091 -20.31231 -19.06730 -18.26532 -18.06714 -17.79502 -17.06057 -16.40946 -16.30285 -15.85102 -15.60838 -15.50070 -15.12115 -14.78773 -14.56454 -14.18460 -14.14831 -13.69014 -13.62231 -13.39599 -13.30456 -13.04661 -12.70017 -12.47472 -12.28529 -12.25467 -11.93752 -11.81554 -11.36324 -10.93141 -10.79865 -10.64658 -10.15005 -10.02207 -9.53710 -5.23432 -0.39843 0.29728 0.64848 0.89026 1.15344 1.51991 1.83721 2.05023 2.35234 3.14299 3.29567 3.49696 3.55609 3.62933 3.79596 3.89660 3.96533 4.06814 4.11469 4.20380 4.24521 4.32314 4.36388 4.38222 4.56833 4.68129 4.75778 4.88502 4.94179 5.01443 5.01780 5.05439 5.16541 5.20706 5.26685 5.44303 6.42996 6.43927 6.66271 7.19983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.579 3.421 8 O -0.530 6.530 9 N -0.724 5.724 10 C 0.144 3.856 11 H 0.093 0.907 12 C -0.127 4.127 13 C -0.150 4.150 14 C 0.103 3.897 15 H 0.056 0.944 16 O -0.568 6.568 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.206 4.206 20 S 0.196 5.804 21 H 0.381 0.619 22 H 0.124 0.876 23 H -0.232 1.232 24 H -0.236 1.236 25 H 0.157 0.843 26 H 0.398 0.602 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.380 0.620 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 4.849 -4.813 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.364 3.636 8 O -0.407 6.407 9 N -0.375 5.375 10 C 0.040 3.960 11 H 0.111 0.889 12 C -0.166 4.166 13 C -0.188 4.188 14 C 0.044 3.956 15 H 0.074 0.926 16 O -0.374 6.374 17 C -0.148 4.148 18 C -0.162 4.162 19 C -0.345 4.345 20 S 0.463 5.537 21 H 0.229 0.771 22 H 0.141 0.859 23 H -0.155 1.155 24 H -0.160 1.160 25 H 0.174 0.826 26 H 0.233 0.767 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.227 0.773 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.724 5.899 -3.262 7.270 hybrid contribution -0.800 -1.630 -0.392 1.858 sum 1.924 4.268 -3.654 5.939 Atomic orbital electron populations 1.86543 1.16532 1.81663 1.49137 1.24450 0.85284 1.09076 0.95110 0.95104 0.82061 0.77507 0.90006 1.24807 1.08559 0.99236 1.03436 1.21049 0.98112 0.94365 0.94706 1.20268 1.04335 0.94754 0.98025 1.17621 0.79035 0.86601 0.80321 1.90828 1.39899 1.50257 1.59723 1.45904 1.53745 1.14156 1.23668 1.21064 0.94823 0.83687 0.96467 0.88913 1.21862 0.98200 0.96813 0.99681 1.22239 0.98664 0.97329 1.00584 1.21850 0.94873 0.84173 0.94696 0.92618 1.86517 1.48065 1.31066 1.71732 1.21412 0.97030 0.96343 1.00006 1.21782 0.97934 0.97283 0.99186 1.25789 1.04497 0.98944 1.05224 1.83090 1.46905 1.11390 1.12360 0.77144 0.85872 1.15512 1.16043 0.82591 0.76707 0.90826 0.91533 0.91203 0.90648 0.77276 0.90469 0.90663 0.91002 0.90378 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.00 12.85 -35.23 -0.45 -0.45 16 2 C -0.03 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.65 -1.12 30.91 -169.99 -5.25 -6.37 16 4 C -0.24 0.06 5.69 -36.18 -0.21 -0.15 16 5 C -0.05 -0.08 9.91 -39.02 -0.39 -0.47 16 6 C -0.16 -0.16 5.98 -104.63 -0.63 -0.78 16 7 C 0.58 1.48 7.76 -12.62 -0.10 1.38 16 8 O -0.53 -3.50 16.46 5.25 0.09 -3.41 16 9 N -0.72 0.43 5.05 -54.96 -0.28 0.15 16 10 C 0.14 -0.04 2.45 -67.93 -0.17 -0.21 16 11 H 0.09 0.18 7.57 -51.93 -0.39 -0.21 16 12 C -0.13 0.04 5.50 -26.73 -0.15 -0.10 16 13 C -0.15 0.09 5.54 -26.73 -0.15 -0.05 16 14 C 0.10 -0.06 3.47 -26.73 -0.09 -0.15 16 15 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 16 O -0.57 -0.44 13.32 -35.23 -0.47 -0.91 16 17 C -0.11 0.08 5.58 -26.70 -0.15 -0.07 16 18 C -0.12 0.26 5.39 -26.70 -0.14 0.11 16 19 C -0.21 0.36 10.38 29.93 0.31 0.67 16 20 S 0.20 -0.39 20.18 -107.50 -2.17 -2.56 16 21 H 0.38 -1.50 8.70 45.56 0.40 -1.10 16 22 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 23 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 24 H -0.24 -0.03 7.11 56.52 0.40 0.38 16 25 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 26 H 0.40 -1.37 7.10 -40.82 -0.29 -1.66 16 27 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.38 -1.15 9.08 45.56 0.41 -0.74 16 32 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 35 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 36 H 0.17 -0.81 7.01 -52.48 -0.37 -1.17 16 LS Contribution 312.32 15.07 4.71 4.71 Total: 0.00 -8.07 312.32 -9.66 -17.73 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -4.08 Total: -9.18 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.75 Total: 0.30 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -0.28 Total: 0.15 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.84 Total: -4.77 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.25 Total: -6.37 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.17 Total: -2.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -8.07 -9.66 -17.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.112 kcal (2) G-P(sol) polarization free energy of solvation -8.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds