Wall clock time and date at job start Sat Mar 6 2021 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47099 * 2 1 4 4 C 1.50702 * 109.46828 * 239.99827 * 2 1 3 5 5 C 1.32770 * 124.71483 * 300.27138 * 4 2 1 6 6 C 1.44419 * 113.08416 * 180.18375 * 5 4 2 7 7 C 1.47191 * 123.46114 * 179.80986 * 6 5 4 8 8 O 1.21633 * 119.99989 * 359.72840 * 7 6 5 9 9 N 1.34777 * 119.99772 * 179.72527 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 O 1.42902 * 109.46943 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 18 18 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 19 19 C 1.36011 * 113.07658 * 359.54092 * 6 5 4 20 20 S 1.70447 * 110.81726 * 0.24504 * 19 6 5 21 21 H 0.96701 * 114.00496 * 59.99874 * 1 2 3 22 22 H 1.08997 * 109.47043 * 120.00142 * 2 1 3 23 23 H 1.48497 * 110.00341 * 59.99825 * 3 2 1 24 24 H 1.48495 * 110.00064 * 181.32135 * 3 2 1 25 25 H 1.07998 * 123.45778 * 359.97438 * 5 4 2 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 28 28 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 29 29 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 30 30 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 31 31 H 0.96693 * 114.00111 * 60.00415 * 16 14 13 32 32 H 1.09000 * 109.47291 * 180.02562 * 17 14 13 33 33 H 1.08999 * 109.47531 * 59.99527 * 17 14 13 34 34 H 1.08999 * 109.46935 * 300.00059 * 18 10 9 35 35 H 1.09004 * 109.47138 * 59.99988 * 18 10 9 36 36 H 1.08004 * 124.59174 * 180.21111 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6646 -1.9749 -1.5353 6 6 2.2778 -2.4008 -2.7715 7 6 2.1354 -3.7581 -3.3227 8 8 1.4771 -4.5901 -2.7278 9 7 2.7344 -4.0791 -4.4865 10 6 2.5977 -5.4319 -5.0320 11 1 2.5638 -6.1517 -4.2142 12 6 1.3063 -5.5250 -5.8472 13 6 1.1632 -6.9379 -6.4163 14 6 2.3592 -7.2478 -7.3187 15 1 2.3933 -6.5283 -8.1368 16 8 2.2253 -8.5673 -7.8508 17 6 3.6507 -7.1549 -6.5035 18 6 3.7938 -5.7413 -5.9345 19 6 2.9958 -1.4170 -3.3771 20 16 2.9439 0.0208 -2.4632 21 1 -0.3934 0.4417 -0.7650 22 1 1.7923 -0.5138 0.8900 23 1 1.5615 2.4679 1.2084 24 1 3.5345 1.7703 -0.0322 25 1 1.0546 -2.6197 -0.9202 26 1 3.2597 -3.4158 -4.9608 27 1 0.4541 -5.3045 -5.2043 28 1 1.3402 -4.8051 -6.6650 29 1 0.2433 -7.0040 -6.9975 30 1 1.1290 -7.6574 -5.5983 31 1 1.4269 -8.6987 -8.3802 32 1 4.5029 -7.3752 -7.1464 33 1 3.6166 -7.8744 -5.6855 34 1 3.8277 -5.0215 -6.7522 35 1 4.7139 -5.6750 -5.3537 36 1 3.5272 -1.5316 -4.3103 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:02:54 Heat of formation + Delta-G solvation = -97.543333 kcal Electronic energy + Delta-G solvation = -19997.697865 eV Core-core repulsion = 16767.283312 eV Total energy + Delta-G solvation = -3230.414554 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34821 -39.80811 -38.77395 -37.21230 -36.92205 -34.59276 -31.91498 -31.86573 -29.40827 -26.97393 -25.68143 -23.90607 -23.13231 -21.90594 -21.25211 -20.33620 -19.00746 -18.24552 -18.09755 -17.78067 -17.06632 -16.44255 -16.30305 -15.94256 -15.57518 -15.49014 -15.10625 -14.79843 -14.57484 -14.18850 -14.12871 -13.68699 -13.61904 -13.36486 -13.27729 -13.02913 -12.66074 -12.46545 -12.29715 -12.21240 -11.93181 -11.78215 -11.31876 -11.06877 -10.79622 -10.61317 -10.23305 -9.98401 -9.44666 -5.12846 -0.34521 0.38410 0.68859 0.81112 1.22540 1.59934 1.90564 2.03778 2.24286 3.25385 3.39178 3.55449 3.65687 3.68267 3.88390 3.95443 4.01315 4.09014 4.18693 4.26324 4.27738 4.37955 4.40431 4.41060 4.61890 4.70751 4.85679 4.91838 4.98628 4.99884 5.06535 5.09252 5.15358 5.22526 5.28673 5.43132 6.45040 6.67924 6.85746 7.13313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.040 4.040 3 Si 0.742 3.258 4 C -0.249 4.249 5 C -0.077 4.077 6 C -0.184 4.184 7 C 0.575 3.425 8 O -0.585 6.585 9 N -0.706 5.706 10 C 0.144 3.856 11 H 0.061 0.939 12 C -0.121 4.121 13 C -0.146 4.146 14 C 0.104 3.896 15 H 0.074 0.926 16 O -0.590 6.590 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.188 4.188 20 S 0.254 5.746 21 H 0.397 0.603 22 H 0.112 0.888 23 H -0.274 1.274 24 H -0.253 1.253 25 H 0.129 0.871 26 H 0.416 0.584 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.394 0.606 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 6.769 -6.935 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.151 4.151 3 Si 0.643 3.357 4 C -0.366 4.366 5 C -0.107 4.107 6 C -0.202 4.202 7 C 0.362 3.638 8 O -0.467 6.467 9 N -0.357 5.357 10 C 0.039 3.961 11 H 0.079 0.921 12 C -0.160 4.160 13 C -0.184 4.184 14 C 0.045 3.955 15 H 0.092 0.908 16 O -0.398 6.398 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.326 4.326 20 S 0.521 5.479 21 H 0.247 0.753 22 H 0.130 0.870 23 H -0.200 1.200 24 H -0.178 1.178 25 H 0.147 0.853 26 H 0.254 0.746 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.086 7.818 -5.440 10.364 hybrid contribution -1.230 -2.204 0.296 2.541 sum 2.856 5.614 -5.145 8.133 Atomic orbital electron populations 1.86501 1.17026 1.82230 1.50367 1.24727 0.85179 1.10447 0.94762 0.94146 0.79458 0.74225 0.87836 1.24906 1.08708 0.98858 1.04134 1.20962 0.99171 0.95039 0.95499 1.20087 1.06712 0.94749 0.98673 1.17954 0.78392 0.86840 0.80631 1.90795 1.42553 1.51918 1.61416 1.45747 1.52865 1.14411 1.22711 1.21024 0.96034 0.83172 0.95863 0.92059 1.21792 0.97054 0.97435 0.99673 1.22192 0.99522 0.96593 1.00093 1.21906 0.94448 0.84103 0.95004 0.90803 1.86481 1.49247 1.31906 1.72185 1.21446 0.97307 0.96808 0.99527 1.21710 0.96926 0.96951 0.99404 1.26195 1.02471 0.98149 1.05828 1.82907 1.44764 1.09936 1.10324 0.75297 0.87037 1.19986 1.17810 0.85328 0.74629 0.93428 0.89521 0.90206 0.92773 0.75609 0.90086 0.92514 0.88499 0.89759 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.65 12.85 -148.98 -1.91 -2.56 16 2 C -0.04 0.02 2.95 71.24 0.21 0.23 16 3 Si 0.74 -2.86 30.91 68.60 2.12 -0.74 16 4 C -0.25 0.00 5.69 24.51 0.14 0.14 16 5 C -0.08 -0.40 9.91 22.67 0.22 -0.18 16 6 C -0.18 -0.49 5.98 -19.87 -0.12 -0.61 16 7 C 0.57 3.90 7.76 86.60 0.67 4.57 16 8 O -0.59 -9.88 16.46 -4.14 -0.07 -9.95 16 9 N -0.71 0.82 5.05 -446.02 -2.25 -1.43 16 10 C 0.14 0.03 2.45 44.99 0.11 0.14 16 11 H 0.06 0.42 7.57 -2.39 -0.02 0.40 16 12 C -0.12 0.00 5.50 30.59 0.17 0.17 16 13 C -0.15 0.06 5.54 30.59 0.17 0.23 16 14 C 0.10 -0.16 3.47 30.60 0.11 -0.05 16 15 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 16 O -0.59 -0.94 13.32 -148.98 -1.98 -2.92 16 17 C -0.11 0.16 5.58 30.61 0.17 0.33 16 18 C -0.11 0.57 5.39 30.61 0.17 0.74 16 19 C -0.19 1.00 10.38 67.30 0.70 1.70 16 20 S 0.25 -1.51 20.18 -56.49 -1.14 -2.65 16 21 H 0.40 -2.92 8.70 -74.06 -0.64 -3.56 16 22 H 0.11 0.14 7.96 -2.39 -0.02 0.12 16 23 H -0.27 -0.84 7.11 99.48 0.71 -0.14 16 24 H -0.25 0.28 7.11 99.48 0.71 0.98 16 25 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 26 H 0.42 -3.67 7.10 -92.71 -0.66 -4.32 16 27 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.39 -2.44 9.08 -74.06 -0.67 -3.11 16 32 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 36 H 0.21 -2.73 7.01 -2.91 -0.02 -2.75 16 Total: 0.00 -22.71 312.32 -3.34 -26.05 By element: Atomic # 1 Polarization: -12.38 SS G_CDS: -0.82 Total: -13.20 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 2.72 Total: 7.41 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -2.25 Total: -1.43 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -3.97 Total: -15.43 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.12 Total: -0.74 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -1.14 Total: -2.65 kcal Total: -22.71 -3.34 -26.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.491 kcal (2) G-P(sol) polarization free energy of solvation -22.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds