Wall clock time and date at job start Sat Mar 6 2021 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37945 * 120.06861 * 2 1 4 4 C 1.38376 * 120.14011 * 180.27860 * 3 2 1 5 5 C 1.50702 * 119.85030 * 179.72645 * 4 3 2 6 6 C 1.38336 * 120.29854 * 359.74333 * 4 3 2 7 7 C 1.50700 * 119.93294 * 180.02562 * 6 4 3 8 8 O 1.42898 * 109.47100 * 75.02094 * 7 6 4 9 9 Si 1.86299 * 109.47206 * 195.02462 * 7 6 4 10 10 C 1.37986 * 120.14152 * 0.02562 * 6 4 3 11 11 C 1.39559 * 119.85293 * 359.97438 * 10 6 4 12 12 C 1.47837 * 120.14308 * 179.97438 * 11 10 6 13 13 O 1.21556 * 120.00158 * 173.75496 * 12 11 10 14 14 N 1.34777 * 120.00544 * 353.75084 * 12 11 10 15 15 C 1.46497 * 120.00546 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.46673 * 35.00301 * 15 14 12 17 17 C 1.52997 * 109.47279 * 155.00135 * 15 14 12 18 18 C 1.52999 * 109.47522 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46950 * 300.00176 * 18 17 15 20 20 H 1.09000 * 109.46872 * 300.00091 * 19 18 17 21 21 O 1.42898 * 109.47180 * 179.97438 * 19 18 17 22 22 C 1.53005 * 109.47112 * 59.99392 * 19 18 17 23 23 C 1.52995 * 109.47070 * 275.00214 * 15 14 12 24 24 H 1.09000 * 109.47344 * 263.61741 * 1 2 3 25 25 H 1.08997 * 109.47827 * 23.61840 * 1 2 3 26 26 H 1.09009 * 109.47073 * 143.62079 * 1 2 3 27 27 H 1.07992 * 119.92877 * 0.04505 * 3 2 1 28 28 H 1.09007 * 109.47010 * 270.01652 * 5 4 3 29 29 H 1.08991 * 109.47428 * 30.01670 * 5 4 3 30 30 H 1.09000 * 109.47258 * 150.02219 * 5 4 3 31 31 H 1.09000 * 109.46770 * 315.02009 * 7 6 4 32 32 H 0.96701 * 113.99974 * 300.00025 * 8 7 6 33 33 H 1.48504 * 110.00096 * 59.99621 * 9 7 6 34 34 H 1.48501 * 109.99996 * 181.31709 * 9 7 6 35 35 H 1.07996 * 120.07502 * 179.97438 * 10 6 4 36 36 H 0.97009 * 119.99451 * 0.02562 * 14 12 11 37 37 H 1.09000 * 109.47319 * 59.99927 * 17 15 14 38 38 H 1.09006 * 109.47242 * 300.00044 * 17 15 14 39 39 H 1.08997 * 109.47431 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47002 * 59.99587 * 18 17 15 41 41 H 0.96694 * 114.00189 * 59.99801 * 21 19 18 42 42 H 1.09000 * 109.46682 * 60.00582 * 22 19 18 43 43 H 1.09004 * 109.46762 * 179.97438 * 22 19 18 44 44 H 1.08996 * 109.47580 * 59.99910 * 23 15 14 45 45 H 1.08999 * 109.47443 * 299.99615 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1955 -0.0058 5 6 4.3303 2.5036 -0.0120 6 6 4.2813 0.0020 -0.0063 7 6 5.7882 0.0135 -0.0121 8 8 6.2668 0.3677 1.2869 9 14 6.4204 -1.6789 -0.4668 10 6 3.6021 -1.1991 -0.0015 11 6 2.2065 -1.2080 0.0043 12 6 1.4723 -2.4911 0.0089 13 8 0.2627 -2.4988 0.1285 14 7 2.1440 -3.6525 -0.1196 15 6 1.4164 -4.9240 -0.1157 16 1 0.4521 -4.7922 -0.6065 17 6 2.2306 -5.9798 -0.8661 18 6 1.4704 -7.3076 -0.8625 19 6 1.2493 -7.7648 0.5808 20 1 2.2135 -7.8968 1.0718 21 8 0.5388 -9.0047 0.5842 22 6 0.4352 -6.7089 1.3312 23 6 1.1959 -5.3808 1.3277 24 1 -0.3634 -0.1142 1.0213 25 1 -0.3635 0.9415 -0.4117 26 1 -0.3634 -0.8275 -0.6096 27 1 1.6581 2.1290 0.0007 28 1 4.5062 2.8167 -1.0412 29 1 3.7407 3.2620 0.5027 30 1 5.2855 2.3780 0.4977 31 1 6.1431 0.7419 -0.7412 32 1 5.9760 1.2390 1.5892 33 1 5.9296 -2.0590 -1.8158 34 1 7.9053 -1.6892 -0.4450 35 1 4.1492 -2.1302 -0.0024 36 1 3.1094 -3.6464 -0.2148 37 1 3.1949 -6.1116 -0.3753 38 1 2.3877 -5.6543 -1.8945 39 1 2.0506 -8.0600 -1.3967 40 1 0.5063 -7.1756 -1.3535 41 1 0.9968 -9.7217 0.1247 42 1 -0.5290 -6.5769 0.8402 43 1 0.2773 -7.0348 2.3593 44 1 0.6159 -4.6287 1.8624 45 1 2.1602 -5.5126 1.8185 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_9599494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:03:02 Heat of formation + Delta-G solvation = -106.517850 kcal Electronic energy + Delta-G solvation = -25846.458044 eV Core-core repulsion = 22215.426842 eV Total energy + Delta-G solvation = -3631.031202 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79530 -40.53655 -39.46311 -37.71048 -36.97829 -34.84843 -34.30891 -33.25339 -31.84920 -30.04449 -28.98101 -28.22342 -25.57593 -24.04381 -23.70940 -23.41131 -21.98504 -21.37489 -20.70132 -18.91675 -18.28364 -18.18886 -17.50151 -16.69466 -16.55340 -16.25368 -16.23461 -15.72801 -15.49498 -15.46810 -14.91133 -14.73986 -14.70642 -14.53036 -14.14618 -14.10945 -13.84733 -13.54193 -13.37124 -13.23657 -13.01993 -12.87428 -12.71033 -12.69830 -12.57151 -12.32886 -12.13451 -12.12744 -11.83546 -11.32513 -11.27756 -11.21081 -10.78148 -10.68033 -10.16505 -9.91248 -9.62938 -4.96218 -0.28908 0.15309 1.34418 1.57391 1.73634 1.94467 2.04124 2.62306 3.30566 3.45354 3.52110 3.58631 3.67985 3.70036 3.75677 3.80625 4.07526 4.10554 4.11459 4.15542 4.22906 4.32060 4.35768 4.39537 4.47040 4.47735 4.51507 4.64774 4.65663 4.67970 4.77496 4.85398 4.90779 4.98543 5.02390 5.05181 5.07439 5.12552 5.14006 5.18989 5.28009 5.34172 5.40160 5.47022 5.52358 5.77272 6.46750 6.57012 6.92225 7.15516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.134 4.134 4 C -0.044 4.044 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.087 4.087 8 O -0.546 6.546 9 Si 0.794 3.206 10 C -0.064 4.064 11 C -0.157 4.157 12 C 0.557 3.443 13 O -0.562 6.562 14 N -0.712 5.712 15 C 0.145 3.855 16 H 0.066 0.934 17 C -0.119 4.119 18 C -0.144 4.144 19 C 0.103 3.897 20 H 0.073 0.927 21 O -0.591 6.591 22 C -0.112 4.112 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.373 0.627 33 H -0.257 1.257 34 H -0.294 1.294 35 H 0.151 0.849 36 H 0.413 0.587 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.395 0.605 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 0.294 -1.221 5.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.152 4.152 4 C -0.044 4.044 5 C -0.183 4.183 6 C -0.138 4.138 7 C -0.194 4.194 8 O -0.354 6.354 9 Si 0.695 3.305 10 C -0.082 4.082 11 C -0.160 4.160 12 C 0.346 3.654 13 O -0.442 6.442 14 N -0.364 5.364 15 C 0.041 3.959 16 H 0.085 0.915 17 C -0.157 4.157 18 C -0.182 4.182 19 C 0.044 3.956 20 H 0.091 0.909 21 O -0.400 6.400 22 C -0.150 4.150 23 C -0.157 4.157 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.224 0.776 33 H -0.182 1.182 34 H -0.221 1.221 35 H 0.168 0.832 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.245 0.755 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.492 -0.411 -1.411 4.727 hybrid contribution 0.233 1.502 -0.618 1.641 sum 4.726 1.091 -2.029 5.257 Atomic orbital electron populations 1.21010 0.90151 1.03177 1.03047 1.20235 0.96980 0.92062 0.93657 1.21189 0.93679 0.98010 1.02276 1.20266 0.93736 0.95816 0.94606 1.21049 1.00323 0.93080 1.03837 1.20159 0.96435 0.93140 1.04068 1.25589 0.91629 1.13794 0.88436 1.86778 1.75509 1.40949 1.32213 0.92395 0.77555 0.79321 0.81187 1.21183 0.92387 0.98076 0.96578 1.19720 0.93742 0.92991 1.09579 1.18427 0.86786 0.84417 0.75807 1.90742 1.15148 1.87573 1.50757 1.45905 1.11596 1.05014 1.73839 1.21029 0.96213 0.82436 0.96265 0.91531 1.21749 0.99560 0.93004 1.01407 1.22173 1.01219 0.97685 0.97118 1.21902 0.94847 0.83623 0.95203 0.90882 1.86494 1.51366 1.21632 1.80513 1.21422 0.98929 0.93747 1.00900 1.21800 1.01548 0.95803 0.96593 0.91232 0.90781 0.90501 0.83477 0.89663 0.89509 0.90443 0.89954 0.77566 1.18219 1.22114 0.83241 0.74941 0.88508 0.90094 0.89143 0.92307 0.75535 0.92790 0.91461 0.92844 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 8.73 71.23 0.62 0.03 16 2 C -0.03 -0.12 5.91 -19.61 -0.12 -0.23 16 3 C -0.13 -0.07 9.31 22.23 0.21 0.13 16 4 C -0.04 0.05 5.87 -19.81 -0.12 -0.06 16 5 C -0.13 0.78 9.27 71.24 0.66 1.44 16 6 C -0.14 0.10 5.26 -19.90 -0.10 0.00 16 7 C -0.09 0.18 1.96 71.24 0.14 0.31 16 8 O -0.55 0.37 12.64 -148.98 -1.88 -1.51 16 9 Si 0.79 -2.44 30.16 68.60 2.07 -0.37 16 10 C -0.06 0.05 8.13 22.53 0.18 0.23 16 11 C -0.16 -0.56 5.87 -20.09 -0.12 -0.68 16 12 C 0.56 3.07 7.66 86.78 0.67 3.73 16 13 O -0.56 -6.99 13.02 -3.89 -0.05 -7.04 16 14 N -0.71 0.80 5.03 -445.43 -2.24 -1.44 16 15 C 0.14 -0.10 2.45 44.99 0.11 0.01 16 16 H 0.07 0.33 7.58 -2.39 -0.02 0.31 16 17 C -0.12 0.74 5.39 30.59 0.16 0.91 16 18 C -0.14 0.66 5.55 30.60 0.17 0.83 16 19 C 0.10 -0.19 3.47 30.60 0.11 -0.09 16 20 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 21 O -0.59 -0.76 13.32 -148.98 -1.98 -2.75 16 22 C -0.11 -0.18 5.57 30.61 0.17 -0.01 16 23 C -0.12 -0.01 5.50 30.61 0.17 0.16 16 24 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 26 H 0.08 0.71 5.87 -2.38 -0.01 0.70 16 27 H 0.15 -0.47 8.06 -2.91 -0.02 -0.49 16 28 H 0.08 -0.58 8.14 -2.38 -0.02 -0.60 16 29 H 0.09 -0.67 8.08 -2.39 -0.02 -0.69 16 30 H 0.08 -0.63 4.96 -2.39 -0.01 -0.64 16 31 H 0.08 -0.29 7.37 -2.39 -0.02 -0.31 16 32 H 0.37 -2.16 6.85 -74.06 -0.51 -2.67 16 33 H -0.26 0.35 7.11 99.48 0.71 1.06 16 34 H -0.29 -1.19 7.11 99.48 0.71 -0.48 16 35 H 0.15 -1.01 3.52 -2.91 -0.01 -1.02 16 36 H 0.41 -3.04 6.68 -92.70 -0.62 -3.66 16 37 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.08 -0.55 8.14 -2.38 -0.02 -0.56 16 39 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.39 -2.86 9.08 -74.06 -0.67 -3.53 16 42 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 44 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: 0.00 -18.44 349.93 -1.91 -20.35 By element: Atomic # 1 Polarization: -13.23 SS G_CDS: -0.73 Total: -13.96 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 2.91 Total: 6.72 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -2.24 Total: -1.44 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -3.92 Total: -11.29 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.07 Total: -0.37 kcal Total: -18.44 -1.91 -20.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_9599494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.165 kcal (2) G-P(sol) polarization free energy of solvation -18.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds