Wall clock time and date at job start Sat Mar 6 2021 15:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.34241 * 126.49954 * 255.02901 * 4 2 1 6 6 N 1.36834 * 109.93455 * 179.97438 * 5 4 2 7 7 C 1.46502 * 125.05667 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46954 * 265.01768 * 7 6 5 9 9 O 1.21279 * 119.99512 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99903 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00007 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47378 * 34.99436 * 11 10 8 13 13 C 1.52997 * 109.47348 * 154.99945 * 11 10 8 14 14 C 1.52999 * 109.47049 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47097 * 299.99925 * 14 13 11 16 16 H 1.09006 * 109.47052 * 300.00199 * 15 14 13 17 17 O 1.42905 * 109.47045 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47110 * 60.00112 * 15 14 13 19 19 C 1.52999 * 109.47049 * 299.99917 * 18 15 14 20 20 C 1.37684 * 109.87757 * 359.97438 * 6 5 4 21 21 C 1.39081 * 133.51188 * 180.02562 * 20 6 5 22 22 C 1.37804 * 119.77441 * 179.31316 * 21 20 6 23 23 C 1.38786 * 120.66742 * 0.55449 * 22 21 20 24 24 C 1.36663 * 120.52793 * 359.63854 * 23 22 21 25 25 C 1.39594 * 119.76469 * 359.97438 * 24 23 22 26 26 H 0.96699 * 114.00604 * 59.99761 * 1 2 3 27 27 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 28 28 H 1.48498 * 110.00005 * 60.00258 * 3 2 1 29 29 H 1.48501 * 110.00049 * 181.31921 * 3 2 1 30 30 H 1.07997 * 125.02984 * 359.97438 * 5 4 2 31 31 H 1.08995 * 109.47578 * 25.02352 * 7 6 5 32 32 H 1.09007 * 109.46799 * 145.02135 * 7 6 5 33 33 H 0.97000 * 120.00049 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47019 * 299.99612 * 13 11 10 35 35 H 1.08992 * 109.47038 * 59.99746 * 13 11 10 36 36 H 1.09006 * 109.47332 * 59.99953 * 14 13 11 37 37 H 1.09001 * 109.47383 * 179.97438 * 14 13 11 38 38 H 0.96695 * 113.99616 * 180.02562 * 17 15 14 39 39 H 1.08999 * 109.47297 * 60.00423 * 18 15 14 40 40 H 1.09004 * 109.47019 * 180.02562 * 18 15 14 41 41 H 1.09000 * 109.47213 * 299.99657 * 19 18 15 42 42 H 1.09008 * 109.47010 * 180.02562 * 19 18 15 43 43 H 1.08004 * 120.11589 * 359.97438 * 21 20 6 44 44 H 1.08003 * 119.66403 * 180.19414 * 22 21 20 45 45 H 1.07994 * 119.73652 * 179.61527 * 23 22 21 46 46 H 1.07997 * 120.11822 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4604 -0.1376 2.3232 6 7 2.8021 -1.0990 3.2349 7 6 3.4068 -0.8403 4.5440 8 6 4.9052 -0.9626 4.4381 9 8 5.4173 -1.2381 3.3738 10 7 5.6759 -0.7656 5.5260 11 6 7.1325 -0.8839 5.4230 12 1 7.4585 -0.5210 4.4483 13 6 7.7910 -0.0503 6.5240 14 6 9.3122 -0.1744 6.4168 15 6 9.7168 -1.6413 6.5767 16 1 9.3904 -2.0040 7.5514 17 8 11.1376 -1.7571 6.4771 18 6 9.0582 -2.4749 5.4756 19 6 7.5370 -2.3508 5.5829 20 6 2.4930 -2.3456 2.7388 21 6 2.6273 -3.6360 3.2400 22 6 2.2004 -4.7097 2.4890 23 6 1.6472 -4.5182 1.2307 24 6 1.5094 -3.2592 0.7172 25 6 1.9278 -2.1565 1.4641 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 1.2085 29 1 3.5345 1.7704 -0.0321 30 1 2.5962 0.9248 2.4620 31 1 3.1466 0.1660 4.8720 32 1 3.0332 -1.5659 5.2665 33 1 5.2661 -0.5456 6.3773 34 1 7.5025 0.9946 6.4103 35 1 7.4650 -0.4133 7.4987 36 1 9.6386 0.1883 5.4420 37 1 9.7814 0.4198 7.2009 38 1 11.4658 -2.6620 6.5690 39 1 9.3846 -2.1122 4.5009 40 1 9.3461 -3.5200 5.5898 41 1 7.2107 -2.7136 6.5576 42 1 7.0678 -2.9451 4.7987 43 1 3.0549 -3.7953 4.2189 44 1 2.3027 -5.7107 2.8813 45 1 1.3233 -5.3708 0.6525 46 1 1.0777 -3.1177 -0.2625 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11353598_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:03:06 Heat of formation + Delta-G solvation = -56.148907 kcal Electronic energy + Delta-G solvation = -28527.613137 eV Core-core repulsion = 24576.887904 eV Total energy + Delta-G solvation = -3950.725233 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66453 -41.18186 -39.68491 -38.13588 -37.64550 -37.05997 -34.74610 -34.17302 -31.97325 -31.63475 -30.39737 -30.00291 -28.47255 -25.77437 -24.02129 -23.94075 -23.40213 -22.56165 -21.71960 -21.06871 -20.63297 -18.69950 -18.36580 -18.28737 -18.24168 -17.83271 -17.20637 -16.62270 -16.52701 -16.18724 -15.66419 -15.59392 -15.52491 -15.08477 -14.95710 -14.91281 -14.73964 -14.60859 -14.26891 -14.20433 -13.65487 -13.44914 -13.44310 -13.35282 -13.07061 -12.78454 -12.66408 -12.55238 -12.48725 -12.27873 -12.08705 -11.85631 -11.82967 -11.39410 -11.26646 -10.86382 -10.65500 -10.27070 -10.19895 -9.27573 -8.75341 -4.99893 0.02888 0.55591 1.28074 1.30527 1.31965 1.48247 1.67190 1.95652 2.05774 2.87104 3.18777 3.43291 3.45957 3.50332 3.57763 3.62846 3.64736 3.78296 3.92758 3.95143 3.99876 4.01611 4.12374 4.16762 4.19935 4.20764 4.30376 4.34009 4.34112 4.50184 4.55284 4.59595 4.69448 4.79394 4.81700 4.85689 4.91954 5.00062 5.02846 5.05460 5.14780 5.20928 5.34275 5.42663 5.56863 5.63784 5.64522 6.02684 6.13840 6.35632 6.80396 6.98458 7.02038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.046 4.046 3 Si 0.786 3.214 4 C -0.180 4.180 5 C 0.052 3.948 6 N -0.468 5.468 7 C 0.086 3.914 8 C 0.491 3.509 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.057 0.943 13 C -0.111 4.111 14 C -0.114 4.114 15 C 0.104 3.896 16 H 0.075 0.925 17 O -0.590 6.590 18 C -0.146 4.146 19 C -0.119 4.119 20 C 0.091 3.909 21 C -0.136 4.136 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.120 4.120 26 H 0.399 0.601 27 H 0.074 0.926 28 H -0.280 1.280 29 H -0.302 1.302 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.422 0.578 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.144 0.856 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 1.410 4.911 5.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.156 4.156 3 Si 0.690 3.310 4 C -0.187 4.187 5 C -0.073 4.073 6 N -0.150 5.150 7 C -0.038 4.038 8 C 0.277 3.723 9 O -0.450 6.450 10 N -0.359 5.359 11 C 0.040 3.960 12 H 0.075 0.925 13 C -0.149 4.149 14 C -0.152 4.152 15 C 0.046 3.954 16 H 0.092 0.908 17 O -0.398 6.398 18 C -0.185 4.185 19 C -0.158 4.158 20 C -0.014 4.014 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.170 4.170 24 C -0.101 4.101 25 C -0.124 4.124 26 H 0.250 0.750 27 H 0.092 0.908 28 H -0.206 1.206 29 H -0.230 1.230 30 H 0.191 0.809 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.260 0.740 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.244 0.756 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.152 0.848 44 H 0.168 0.832 45 H 0.162 0.838 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.781 2.228 5.354 5.851 hybrid contribution 0.281 -1.112 0.261 1.177 sum -0.500 1.115 5.615 5.746 Atomic orbital electron populations 1.86479 1.17582 1.82404 1.50931 1.24221 0.85380 1.10549 0.95423 0.94269 0.76677 0.74557 0.85466 1.20052 1.09495 0.91978 0.97172 1.21718 1.01711 0.94393 0.89526 1.43390 1.52235 1.03951 1.15458 1.21998 0.88989 1.08781 0.84040 1.21402 0.90448 0.76402 0.84079 1.90798 1.75663 1.48442 1.30106 1.45856 1.06723 1.71023 1.12283 1.20979 0.79251 0.95880 0.99884 0.92493 1.21689 0.93677 1.00766 0.98773 1.21444 0.95476 0.95392 1.02862 1.21904 0.80205 0.95835 0.97492 0.90755 1.86485 1.21890 1.35185 1.96260 1.22193 0.95274 1.01268 0.99726 1.21775 0.95367 0.95961 1.02707 1.18480 1.01504 0.86888 0.94571 1.20267 1.04928 0.88824 1.01643 1.21201 0.97495 0.98986 0.94374 1.20984 1.02068 0.97069 0.96868 1.20505 0.98594 0.91334 0.99630 1.19361 1.04459 0.93480 0.95149 0.75029 0.90798 1.20636 1.23037 0.80858 0.82716 0.83340 0.73993 0.89692 0.88423 0.92698 0.90074 0.75592 0.93035 0.90277 0.89390 0.93641 0.84845 0.83170 0.83796 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.36 12.86 -148.98 -1.92 -4.27 16 2 C -0.05 -0.23 3.05 71.24 0.22 -0.02 16 3 Si 0.79 0.68 30.79 68.60 2.11 2.79 16 4 C -0.18 -2.05 5.61 -18.63 -0.10 -2.16 16 5 C 0.05 0.48 9.89 83.00 0.82 1.30 16 6 N -0.47 -3.41 2.27 -519.98 -1.18 -4.59 16 7 C 0.09 -0.23 6.48 85.63 0.56 0.33 16 8 C 0.49 1.23 7.86 87.66 0.69 1.91 16 9 O -0.57 -8.34 16.09 -3.03 -0.05 -8.39 16 10 N -0.71 3.22 5.08 -442.54 -2.25 0.97 16 11 C 0.14 -0.19 2.46 44.99 0.11 -0.08 16 12 H 0.06 0.35 7.58 -2.39 -0.02 0.33 16 13 C -0.11 0.67 5.39 30.59 0.16 0.84 16 14 C -0.11 0.19 5.57 30.59 0.17 0.36 16 15 C 0.10 -0.18 3.47 30.59 0.11 -0.07 16 16 H 0.07 -0.38 8.14 -2.38 -0.02 -0.39 16 17 O -0.59 -0.94 13.32 -148.98 -1.98 -2.93 16 18 C -0.15 0.08 5.55 30.59 0.17 0.25 16 19 C -0.12 0.11 5.49 30.59 0.17 0.28 16 20 C 0.09 0.99 6.80 39.03 0.27 1.26 16 21 C -0.14 -0.99 10.00 22.37 0.22 -0.76 16 22 C -0.10 -0.57 10.01 22.30 0.22 -0.34 16 23 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 24 C -0.08 -0.85 10.05 22.23 0.22 -0.63 16 25 C -0.12 -1.60 6.35 -20.20 -0.13 -1.73 16 26 H 0.40 -2.83 8.74 -74.06 -0.65 -3.47 16 27 H 0.07 0.24 7.96 -2.39 -0.02 0.22 16 28 H -0.28 -1.35 7.04 99.48 0.70 -0.65 16 29 H -0.30 -2.56 7.11 99.48 0.71 -1.86 16 30 H 0.17 0.87 6.30 -2.91 -0.02 0.85 16 31 H 0.16 -1.51 8.12 -2.39 -0.02 -1.53 16 32 H 0.15 -1.29 8.14 -2.38 -0.02 -1.31 16 33 H 0.42 -5.32 8.60 -92.71 -0.80 -6.12 16 34 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 37 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.39 -2.42 9.08 -74.06 -0.67 -3.09 16 39 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.04 0.22 8.14 -2.38 -0.02 0.20 16 43 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 44 H 0.15 -0.04 8.06 -2.91 -0.02 -0.07 16 45 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 46 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -31.93 378.59 -2.24 -34.17 By element: Atomic # 1 Polarization: -16.61 SS G_CDS: -1.07 Total: -17.68 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.09 Total: -0.06 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -3.43 Total: -3.62 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -3.95 Total: -15.59 kcal Atomic # 14 Polarization: 0.68 SS G_CDS: 2.11 Total: 2.79 kcal Total: -31.93 -2.24 -34.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.982 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds