Wall clock time and date at job start Sat Mar 6 2021 15:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36767 * 125.80591 * 2 1 4 4 C 1.47269 * 126.93639 * 359.93909 * 3 2 1 5 5 O 1.21624 * 120.00354 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99541 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99793 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47092 * 34.99824 * 7 6 4 9 9 C 1.52997 * 109.47007 * 154.99772 * 7 6 4 10 10 C 1.52999 * 109.47317 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47159 * 300.00546 * 10 9 7 12 12 H 1.09002 * 109.46935 * 299.99411 * 11 10 9 13 13 O 1.42906 * 109.47029 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 11 10 9 15 15 C 1.53000 * 109.47023 * 274.99565 * 7 6 4 16 16 C 1.46686 * 106.11848 * 180.20366 * 3 2 1 17 17 C 1.34488 * 106.32943 * 359.62799 * 16 3 2 18 18 C 1.50706 * 125.56888 * 180.16456 * 17 16 3 19 19 O 1.42902 * 109.46706 * 300.26963 * 18 17 16 20 20 Si 1.86296 * 109.47013 * 180.26920 * 18 17 16 21 21 N 1.34657 * 125.79688 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47155 * 90.00307 * 1 2 3 23 23 H 1.08992 * 109.47062 * 210.00501 * 1 2 3 24 24 H 1.09004 * 109.46876 * 330.00622 * 1 2 3 25 25 H 0.97004 * 119.99983 * 0.02562 * 6 4 3 26 26 H 1.08996 * 109.47853 * 300.00060 * 9 7 6 27 27 H 1.09002 * 109.47153 * 60.00089 * 9 7 6 28 28 H 1.09002 * 109.46716 * 60.00091 * 10 9 7 29 29 H 1.09000 * 109.47486 * 180.02562 * 10 9 7 30 30 H 0.96693 * 113.99867 * 180.02562 * 13 11 10 31 31 H 1.09002 * 109.46695 * 59.99734 * 14 11 10 32 32 H 1.08993 * 109.47194 * 179.97438 * 14 11 10 33 33 H 1.08992 * 109.47399 * 300.00063 * 15 7 6 34 34 H 1.09004 * 109.46724 * 60.00549 * 15 7 6 35 35 H 1.07996 * 126.83506 * 179.74327 * 16 3 2 36 36 H 1.08997 * 109.46898 * 60.27336 * 18 17 16 37 37 H 0.96691 * 113.99819 * 300.00070 * 19 18 17 38 38 H 1.48505 * 109.99883 * 58.68068 * 20 18 17 39 39 H 1.48496 * 109.99995 * 180.02562 * 20 18 17 40 40 H 0.97002 * 124.85738 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5156 -0.0013 5 8 0.6840 2.7839 -0.0020 6 7 2.7851 3.5053 -0.0016 7 6 2.3505 4.9044 -0.0023 8 1 1.4387 5.0019 0.5870 9 6 3.4477 5.7795 0.6071 10 6 2.9942 7.2407 0.6059 11 6 2.7234 7.6894 -0.8316 12 1 3.6353 7.5916 -1.4207 13 8 2.2992 9.0541 -0.8327 14 6 1.6262 6.8144 -1.4410 15 6 2.0795 5.3535 -1.4395 16 6 3.6883 0.6150 -0.0050 17 6 3.6095 -0.7275 0.0008 18 6 4.7820 -1.6744 0.0022 19 8 5.5766 -1.4502 -1.1641 20 14 4.1615 -3.4310 0.0027 21 7 2.2947 -1.0922 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 3.7312 3.2913 -0.0014 26 1 3.6409 5.4596 1.6310 27 1 4.3595 5.6819 0.0178 28 1 2.0823 7.3386 1.1949 29 1 3.7760 7.8642 1.0396 30 1 2.1090 9.4061 -1.7130 31 1 0.7144 6.9122 -0.8519 32 1 1.4330 7.1344 -2.4648 33 1 2.9912 5.2560 -2.0288 34 1 1.2978 4.7301 -1.8736 35 1 4.5891 1.2107 -0.0102 36 1 5.3867 -1.5025 0.8926 37 1 5.1017 -1.5853 -1.9955 38 1 3.3092 -3.6690 -1.1900 39 1 5.3080 -4.3747 0.0047 40 1 1.9733 -2.0074 0.0005 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11353598_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:03:11 Heat of formation + Delta-G solvation = -86.681805 kcal Electronic energy + Delta-G solvation = -22329.459346 eV Core-core repulsion = 18917.626147 eV Total energy + Delta-G solvation = -3411.833198 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50129 -40.71052 -39.25609 -37.98562 -36.83569 -34.35643 -32.82620 -32.17467 -31.85820 -29.42583 -28.82475 -25.63607 -23.91763 -23.83967 -22.39222 -21.53982 -21.19671 -20.26033 -18.80434 -18.18868 -17.77134 -17.43081 -16.75735 -16.66117 -16.11981 -15.78422 -15.48763 -15.40329 -15.11774 -14.56929 -14.53927 -14.46167 -14.07209 -14.01634 -13.84689 -13.42525 -13.30419 -13.22061 -12.91569 -12.81157 -12.64028 -12.37176 -12.21303 -12.15784 -11.69860 -11.26579 -10.94529 -10.76244 -10.54971 -10.00014 -9.79358 -9.15679 -5.26623 0.77942 0.96588 1.25333 1.29393 1.68728 1.97778 2.42834 2.67962 3.16497 3.23239 3.57153 3.62918 3.73552 3.81991 4.02206 4.10505 4.18713 4.19844 4.21601 4.31115 4.38479 4.42734 4.46386 4.50334 4.67370 4.68560 4.75486 4.86215 4.96509 5.01897 5.05976 5.11016 5.13746 5.23057 5.28861 5.38856 5.64927 5.70796 5.84938 6.21892 6.31532 6.72046 6.73430 7.50359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.124 3.876 3 C -0.241 4.241 4 C 0.594 3.406 5 O -0.548 6.548 6 N -0.725 5.725 7 C 0.146 3.854 8 H 0.091 0.909 9 C -0.124 4.124 10 C -0.109 4.109 11 C 0.103 3.897 12 H 0.055 0.945 13 O -0.568 6.568 14 C -0.149 4.149 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.028 4.028 18 C -0.040 4.040 19 O -0.522 6.522 20 Si 0.668 3.332 21 N -0.545 5.545 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.400 0.600 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.379 0.621 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.378 0.622 38 H -0.255 1.255 39 H -0.246 1.246 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 -3.006 0.229 3.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.005 3.995 3 C -0.251 4.251 4 C 0.384 3.616 5 O -0.427 6.427 6 N -0.375 5.375 7 C 0.041 3.959 8 H 0.109 0.891 9 C -0.162 4.162 10 C -0.147 4.147 11 C 0.044 3.956 12 H 0.073 0.927 13 O -0.374 6.374 14 C -0.188 4.188 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.136 4.136 18 C -0.151 4.151 19 O -0.328 6.328 20 Si 0.568 3.432 21 N -0.145 5.145 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.234 0.766 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.225 0.775 38 H -0.180 1.180 39 H -0.169 1.169 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.737 -3.676 0.899 3.856 hybrid contribution 0.592 -0.085 -1.818 1.913 sum 1.329 -3.761 -0.918 4.093 Atomic orbital electron populations 1.20656 0.86541 1.04673 1.03816 1.20412 0.93790 0.85254 0.99999 1.20121 0.93030 0.92066 1.19881 1.17317 0.85273 0.84012 0.75046 1.90751 1.16579 1.84356 1.50997 1.45820 1.09801 1.05586 1.76286 1.20984 0.98573 0.79717 0.96595 0.89104 1.21766 0.98181 0.94230 1.02018 1.21403 1.02832 0.94880 0.95631 1.21859 0.95564 0.81217 0.96974 0.92660 1.86517 1.89920 1.26467 1.34515 1.22225 0.99829 0.95090 1.01620 1.21855 1.02063 0.95756 0.96854 1.21790 0.95680 0.92576 1.05219 1.20474 0.84344 0.95628 1.13106 1.24368 0.92308 1.06642 0.91775 1.86650 1.39562 1.90919 1.15646 0.95635 0.84036 0.75111 0.88414 1.41720 1.05567 1.08477 1.58692 0.90155 0.91373 0.87716 0.76608 0.90386 0.91093 0.90728 0.90585 0.77359 0.90718 0.91378 0.91685 0.90914 0.83572 0.85307 0.77450 1.17991 1.16939 0.74741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.02 9.88 36.01 0.36 0.38 16 2 C 0.12 0.10 7.17 -81.88 -0.59 -0.49 16 3 C -0.24 -0.46 6.29 -103.35 -0.65 -1.11 16 4 C 0.59 1.88 7.77 -12.59 -0.10 1.78 16 5 O -0.55 -3.30 14.48 5.26 0.08 -3.23 16 6 N -0.72 -0.41 5.07 -54.93 -0.28 -0.69 16 7 C 0.15 0.07 2.45 -67.93 -0.17 -0.10 16 8 H 0.09 0.23 7.58 -51.93 -0.39 -0.17 16 9 C -0.12 0.15 5.39 -26.73 -0.14 0.01 16 10 C -0.11 0.01 5.57 -26.73 -0.15 -0.14 16 11 C 0.10 0.00 3.47 -26.73 -0.09 -0.09 16 12 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 13 O -0.57 -0.71 13.32 -35.23 -0.47 -1.18 16 14 C -0.15 0.01 5.54 -26.76 -0.15 -0.14 16 15 C -0.13 -0.05 5.49 -26.75 -0.15 -0.20 16 16 C -0.13 -0.04 10.43 -37.50 -0.39 -0.43 16 17 C -0.03 0.02 6.11 -81.86 -0.50 -0.48 16 18 C -0.04 0.07 2.98 36.01 0.11 0.18 16 19 O -0.52 0.12 12.86 -35.23 -0.45 -0.33 16 20 Si 0.67 -1.82 30.94 -169.99 -5.26 -7.08 16 21 N -0.55 0.69 5.41 -5.42 -0.03 0.66 16 22 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 23 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 24 H 0.10 0.18 6.47 -51.93 -0.34 -0.15 16 25 H 0.40 -0.59 7.73 -40.82 -0.32 -0.91 16 26 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.38 -0.98 9.08 45.56 0.41 -0.56 16 31 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.15 -0.16 7.69 -52.49 -0.40 -0.56 16 36 H 0.13 -0.33 7.96 -51.93 -0.41 -0.75 16 37 H 0.38 -1.05 8.70 45.56 0.40 -0.65 16 38 H -0.26 0.23 7.11 56.52 0.40 0.63 16 39 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 40 H 0.41 -1.55 6.70 -40.82 -0.27 -1.82 16 LS Contribution 326.33 15.07 4.92 4.92 Total: 0.00 -8.14 326.33 -9.28 -17.43 By element: Atomic # 1 Polarization: -4.49 SS G_CDS: -5.17 Total: -9.66 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.61 Total: -0.84 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -0.31 Total: -0.03 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.85 Total: -4.73 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: -5.26 Total: -7.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -8.14 -9.28 -17.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11353598_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.256 kcal (2) G-P(sol) polarization free energy of solvation -8.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds