Wall clock time and date at job start Sat Mar 6 2021 16:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35535 * 125.67879 * 2 1 4 4 C 1.35462 * 108.87611 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.06543 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.46958 * 65.00142 * 5 4 3 7 7 Si 1.86298 * 109.47046 * 185.00631 * 5 4 3 8 8 C 1.39819 * 107.87315 * 359.76959 * 4 3 2 9 9 C 1.37662 * 125.67835 * 180.02562 * 2 1 3 10 10 C 1.46625 * 126.23857 * 359.95526 * 9 2 1 11 11 O 1.21694 * 119.99992 * 173.71772 * 10 9 2 12 12 N 1.34779 * 119.99718 * 353.71887 * 10 9 2 13 13 C 1.39163 * 120.00011 * 183.90305 * 12 10 9 14 14 C 1.40287 * 120.17030 * 151.14171 * 13 12 10 15 15 C 1.47508 * 120.20239 * 359.97438 * 14 13 12 16 16 O 1.21592 * 119.99506 * 354.43312 * 15 14 13 17 17 N 1.34777 * 120.00246 * 174.42914 * 15 14 13 18 18 C 1.46498 * 119.99669 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.47136 * 35.00728 * 18 17 15 20 20 C 1.53008 * 109.46747 * 155.00351 * 18 17 15 21 21 C 1.52996 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.53007 * 109.46604 * 299.99944 * 21 20 18 23 23 H 1.08990 * 109.47125 * 299.99818 * 22 21 20 24 24 O 1.42900 * 109.46926 * 179.97438 * 22 21 20 25 25 C 1.52999 * 109.47314 * 60.00159 * 22 21 20 26 26 C 1.52997 * 109.47338 * 274.99953 * 18 17 15 27 27 C 1.39693 * 119.59809 * 180.27589 * 14 13 12 28 28 C 1.37795 * 119.92540 * 359.44677 * 27 14 13 29 29 C 1.38572 * 120.33204 * 0.57593 * 28 27 14 30 30 C 1.38011 * 120.41246 * 359.70332 * 29 28 27 31 31 H 1.09006 * 109.46757 * 262.26960 * 1 2 3 32 32 H 1.08992 * 109.47231 * 22.27113 * 1 2 3 33 33 H 1.09003 * 109.46902 * 142.27304 * 1 2 3 34 34 H 1.08001 * 125.56089 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46911 * 305.00687 * 5 4 3 36 36 H 0.96697 * 113.99499 * 60.00284 * 6 5 4 37 37 H 1.48499 * 110.00109 * 58.68453 * 7 5 4 38 38 H 1.48500 * 109.99723 * 180.02562 * 7 5 4 39 39 H 1.08004 * 126.46408 * 180.24321 * 8 4 3 40 40 H 0.97007 * 120.00093 * 3.90953 * 12 10 9 41 41 H 0.97000 * 119.99482 * 0.02562 * 17 15 14 42 42 H 1.09000 * 109.47226 * 59.99798 * 20 18 17 43 43 H 1.09002 * 109.46940 * 299.99811 * 20 18 17 44 44 H 1.08996 * 109.47479 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.46854 * 59.99320 * 21 20 18 46 46 H 0.96693 * 114.00089 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.47328 * 59.99857 * 25 22 21 48 48 H 1.09002 * 109.47032 * 179.97438 * 25 22 21 49 49 H 1.09000 * 109.47122 * 300.00500 * 26 18 17 50 50 H 1.08996 * 109.46964 * 60.00264 * 26 18 17 51 51 H 1.08008 * 120.03478 * 179.72267 * 27 14 13 52 52 H 1.07995 * 119.83104 * 180.29565 * 28 27 14 53 53 H 1.08002 * 119.79268 * 179.71963 * 29 28 27 54 54 H 1.07997 * 119.96512 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5523 0.7094 -0.0006 5 6 4.7538 1.6191 -0.0002 6 8 4.7901 2.3597 1.2213 7 14 6.3051 0.5991 -0.1546 8 6 3.5784 -0.6886 0.0044 9 6 2.2679 -1.1182 -0.0005 10 6 1.8128 -2.5121 -0.0002 11 8 2.6197 -3.4156 -0.1160 12 7 0.5008 -2.7925 0.1283 13 6 0.0768 -4.1154 0.2103 14 6 -1.0922 -4.4387 0.9154 15 6 -1.8784 -3.3788 1.5743 16 8 -1.4622 -2.2365 1.5943 17 7 -3.0580 -3.6765 2.1542 18 6 -3.8391 -2.6236 2.8082 19 1 -3.7188 -1.6888 2.2607 20 6 -5.3170 -3.0195 2.8228 21 6 -6.1329 -1.9197 3.5052 22 6 -5.6398 -1.7360 4.9419 23 1 -5.7602 -2.6706 5.4896 24 8 -6.4014 -0.7084 5.5791 25 6 -4.1620 -1.3401 4.9273 26 6 -3.3460 -2.4405 4.2449 27 6 -1.5036 -5.7713 0.9949 28 6 -0.7677 -6.7563 0.3728 29 6 0.3867 -6.4337 -0.3225 30 6 0.8091 -5.1224 -0.4051 31 1 -0.3633 -0.1382 1.0184 32 1 -0.3633 0.9509 -0.3894 33 1 -0.3633 -0.8128 -0.6289 34 1 1.9082 2.1236 0.0004 35 1 4.6874 2.3090 -0.8415 36 1 4.8493 1.8086 2.0137 37 1 6.2652 -0.2000 -1.4056 38 1 7.4972 1.4846 -0.1548 39 1 4.4589 -1.3141 0.0090 40 1 -0.1480 -2.0721 0.1636 41 1 -3.3898 -4.5879 2.1386 42 1 -5.4373 -3.9544 3.3702 43 1 -5.6683 -3.1500 1.7993 44 1 -7.1857 -2.2015 3.5152 45 1 -6.0124 -0.9851 2.9574 46 1 -6.1429 -0.5379 6.4951 47 1 -4.0416 -0.4055 4.3796 48 1 -3.8109 -1.2088 5.9508 49 1 -3.4663 -3.3754 4.7923 50 1 -2.2932 -2.1585 4.2345 51 1 -2.4001 -6.0287 1.5397 52 1 -1.0899 -7.7854 0.4313 53 1 0.9592 -7.2132 -0.8030 54 1 1.7097 -4.8790 -0.9492 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_10803934.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:09:43 Heat of formation + Delta-G solvation = -58.771033 kcal Electronic energy + Delta-G solvation = -38578.269812 eV Core-core repulsion = 33675.795254 eV Total energy + Delta-G solvation = -4902.474559 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.88497 -41.87678 -40.82596 -39.74050 -38.93549 -37.74916 -37.11441 -36.20847 -34.61543 -34.06613 -32.31936 -31.88110 -31.61207 -30.20791 -29.26066 -28.55999 -26.06923 -25.17217 -24.61623 -23.88857 -23.41976 -22.56807 -21.93691 -21.28735 -20.97773 -20.75894 -19.19314 -18.90742 -18.32063 -18.19042 -17.56063 -17.36231 -17.19407 -17.03381 -16.66627 -16.14707 -16.07306 -15.84153 -15.77061 -15.57290 -15.49514 -15.41331 -15.28446 -15.05595 -14.78368 -14.69756 -14.43631 -14.19032 -14.02002 -13.83102 -13.67824 -13.37751 -13.33242 -13.26752 -13.24261 -13.05968 -12.92221 -12.71808 -12.45100 -12.21787 -12.19169 -12.01219 -11.78887 -11.75795 -11.31264 -11.25844 -10.93863 -10.77478 -10.39840 -10.29970 -9.98269 -9.85802 -9.50898 -9.15824 -4.94397 -0.37362 0.07050 0.48440 1.39026 1.44638 1.57508 1.70239 1.73894 1.82886 1.96797 1.99447 2.08895 2.78058 3.26091 3.36687 3.53492 3.55913 3.62128 3.70375 3.72317 3.74046 3.92863 4.01237 4.03884 4.09386 4.09845 4.15055 4.20048 4.26623 4.29261 4.31584 4.34823 4.37725 4.41668 4.42432 4.47969 4.60944 4.64530 4.75945 4.81877 4.86916 4.94262 4.95411 5.01654 5.04768 5.08921 5.11141 5.20031 5.23475 5.29076 5.31256 5.43132 5.46021 5.54959 5.73384 5.86428 6.03708 6.20187 6.40529 6.78595 6.84425 6.85551 7.05690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.423 5.423 3 C 0.069 3.931 4 C -0.223 4.223 5 C -0.025 4.025 6 O -0.556 6.556 7 Si 0.759 3.241 8 C -0.103 4.103 9 C -0.084 4.084 10 C 0.583 3.417 11 O -0.542 6.542 12 N -0.662 5.662 13 C 0.181 3.819 14 C -0.189 4.189 15 C 0.567 3.433 16 O -0.574 6.574 17 N -0.702 5.702 18 C 0.147 3.853 19 H 0.075 0.925 20 C -0.115 4.115 21 C -0.111 4.111 22 C 0.102 3.898 23 H 0.068 0.932 24 O -0.590 6.590 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.056 4.056 28 C -0.141 4.141 29 C -0.070 4.070 30 C -0.165 4.165 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.200 0.800 35 H 0.112 0.888 36 H 0.393 0.607 37 H -0.297 1.297 38 H -0.293 1.293 39 H 0.155 0.845 40 H 0.424 0.576 41 H 0.416 0.584 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.393 0.607 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.166 0.834 52 H 0.163 0.837 53 H 0.149 0.851 54 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 -4.131 3.294 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.097 5.097 3 C -0.069 4.069 4 C -0.229 4.229 5 C -0.137 4.137 6 O -0.364 6.364 7 Si 0.667 3.333 8 C -0.130 4.130 9 C -0.195 4.195 10 C 0.375 3.625 11 O -0.421 6.421 12 N -0.316 5.316 13 C 0.084 3.916 14 C -0.195 4.195 15 C 0.356 3.644 16 O -0.455 6.455 17 N -0.353 5.353 18 C 0.042 3.958 19 H 0.094 0.906 20 C -0.152 4.152 21 C -0.149 4.149 22 C 0.044 3.956 23 H 0.086 0.914 24 O -0.398 6.398 25 C -0.182 4.182 26 C -0.160 4.160 27 C -0.075 4.075 28 C -0.159 4.159 29 C -0.089 4.089 30 C -0.185 4.185 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.217 0.783 35 H 0.129 0.871 36 H 0.243 0.757 37 H -0.225 1.225 38 H -0.221 1.221 39 H 0.172 0.828 40 H 0.275 0.725 41 H 0.254 0.746 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.243 0.757 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.184 0.816 52 H 0.181 0.819 53 H 0.167 0.833 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.155 -3.584 1.805 8.203 hybrid contribution -0.199 0.306 0.107 0.380 sum -7.354 -3.278 1.912 8.275 Atomic orbital electron populations 1.22574 0.75026 1.06108 1.04962 1.44245 1.07282 1.05148 1.53055 1.22377 0.89567 0.92380 1.02541 1.19892 0.95407 0.93199 1.14404 1.24250 1.01989 0.97655 0.89823 1.86430 1.96825 1.37228 1.15887 0.93691 0.74118 0.79628 0.85889 1.21338 0.94711 0.94754 1.02210 1.20103 0.91684 0.85862 1.21891 1.17433 0.81968 0.87525 0.75606 1.90769 1.54609 1.46468 1.50210 1.44324 1.08654 1.08277 1.70326 1.18016 0.94012 0.84520 0.95072 1.19748 0.98655 0.95496 1.05571 1.18179 0.81250 0.87408 0.77548 1.90522 1.70472 1.22744 1.61809 1.45794 1.19928 1.13529 1.56052 1.21043 0.90842 0.91134 0.92747 0.90647 1.21709 0.91558 0.99396 1.02575 1.21419 1.00377 0.99289 0.93850 1.21918 0.89247 0.90315 0.94159 0.91383 1.86481 1.62433 1.58720 1.32195 1.22177 0.95526 0.98856 1.01642 1.21807 0.99180 0.99667 0.95390 1.21518 0.99746 0.89683 0.96539 1.21503 0.94928 1.01265 0.98228 1.21634 0.95915 0.95422 0.95923 1.21575 1.01815 0.93278 1.01844 0.88820 0.85400 0.90488 0.78271 0.87083 0.75736 1.22463 1.22103 0.82801 0.72499 0.74603 0.89067 0.89553 0.90480 0.92024 0.75685 0.92165 0.90655 0.90241 0.93044 0.81644 0.81941 0.83285 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.09 9.44 127.77 1.21 1.12 16 2 N -0.42 -1.39 3.16 -534.30 -1.69 -3.08 16 3 C 0.07 0.10 11.28 83.48 0.94 1.04 16 4 C -0.22 -0.82 5.40 -20.12 -0.11 -0.93 16 5 C -0.03 -0.05 3.00 71.24 0.21 0.16 16 6 O -0.56 -1.03 12.88 -148.98 -1.92 -2.95 16 7 Si 0.76 2.07 30.66 68.60 2.10 4.17 16 8 C -0.10 -0.75 9.14 22.58 0.21 -0.54 16 9 C -0.08 -0.74 6.88 40.34 0.28 -0.46 16 10 C 0.58 6.94 7.64 86.43 0.66 7.60 16 11 O -0.54 -8.98 13.96 -4.33 -0.06 -9.05 16 12 N -0.66 -5.53 4.60 -306.57 -1.41 -6.94 16 13 C 0.18 1.32 6.41 38.63 0.25 1.57 16 14 C -0.19 -0.35 5.89 -19.98 -0.12 -0.47 16 15 C 0.57 0.71 7.71 86.69 0.67 1.38 16 16 O -0.57 -3.24 12.36 -4.01 -0.05 -3.29 16 17 N -0.70 3.87 5.03 -445.72 -2.24 1.63 16 18 C 0.15 -0.71 2.45 44.99 0.11 -0.59 16 19 H 0.08 -0.06 7.58 -2.39 -0.02 -0.08 16 20 C -0.11 0.95 5.39 30.60 0.16 1.12 16 21 C -0.11 0.49 5.57 30.60 0.17 0.66 16 22 C 0.10 -0.39 3.47 30.60 0.11 -0.29 16 23 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 24 O -0.59 0.25 13.32 -148.98 -1.98 -1.73 16 25 C -0.14 0.54 5.55 30.61 0.17 0.71 16 26 C -0.12 0.46 5.50 30.61 0.17 0.63 16 27 C -0.06 0.25 9.52 22.52 0.21 0.47 16 28 C -0.14 0.59 10.02 22.24 0.22 0.81 16 29 C -0.07 -0.04 10.03 22.30 0.22 0.19 16 30 C -0.16 -1.18 8.73 22.37 0.20 -0.98 16 31 H 0.09 0.01 7.00 -2.38 -0.02 -0.01 16 32 H 0.13 -0.99 8.11 -2.39 -0.02 -1.01 16 33 H 0.08 -0.04 6.01 -2.39 -0.01 -0.06 16 34 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 35 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 36 H 0.39 -1.97 8.70 -74.06 -0.64 -2.61 16 37 H -0.30 -2.79 7.11 99.48 0.71 -2.09 16 38 H -0.29 -2.55 7.11 99.48 0.71 -1.84 16 39 H 0.15 0.96 6.40 -2.91 -0.02 0.94 16 40 H 0.42 2.42 1.94 -92.70 -0.18 2.24 16 41 H 0.42 -4.72 6.67 -92.71 -0.62 -5.34 16 42 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.39 -3.07 9.08 -74.06 -0.67 -3.74 16 47 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 49 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.17 -2.09 6.45 -2.91 -0.02 -2.11 16 52 H 0.16 -1.67 8.06 -2.91 -0.02 -1.69 16 53 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 54 H 0.13 1.51 5.75 -2.91 -0.02 1.49 16 Total: 0.00 -26.50 428.29 -2.40 -28.90 By element: Atomic # 1 Polarization: -19.75 SS G_CDS: -1.09 Total: -20.83 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.94 Total: 13.18 kcal Atomic # 7 Polarization: -3.05 SS G_CDS: -5.34 Total: -8.39 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -4.01 Total: -17.02 kcal Atomic # 14 Polarization: 2.07 SS G_CDS: 2.10 Total: 4.17 kcal Total: -26.50 -2.40 -28.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_10803934.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.871 kcal (2) G-P(sol) polarization free energy of solvation -26.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds