Wall clock time and date at job start Sat Mar 6 2021 16:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.46966 * 2 1 4 4 C 1.50699 * 109.47399 * 119.99945 * 2 1 3 5 5 C 1.37846 * 119.88800 * 65.27574 * 4 2 1 6 6 C 1.39684 * 119.87327 * 180.25213 * 5 4 2 7 7 C 1.47647 * 120.16621 * 179.74689 * 6 5 4 8 8 O 1.21573 * 120.00104 * 179.72872 * 7 6 5 9 9 N 1.34779 * 120.00392 * 359.72760 * 7 6 5 10 10 C 1.39193 * 120.00004 * 185.29252 * 9 7 6 11 11 C 1.40291 * 120.16180 * 214.96376 * 10 9 7 12 12 C 1.47510 * 120.20156 * 359.95468 * 11 10 9 13 13 O 1.21586 * 120.00085 * 355.04735 * 12 11 10 14 14 N 1.34779 * 119.99467 * 174.77081 * 12 11 10 15 15 C 1.46500 * 119.99331 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47534 * 34.99968 * 15 14 12 17 17 C 1.53003 * 109.47004 * 155.00284 * 15 14 12 18 18 C 1.53001 * 109.47096 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47115 * 299.99628 * 18 17 15 20 20 H 1.08988 * 109.47536 * 300.00116 * 19 18 17 21 21 O 1.42900 * 109.47017 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47009 * 60.00539 * 19 18 17 23 23 C 1.52998 * 109.47382 * 274.99810 * 15 14 12 24 24 C 1.39698 * 119.59608 * 180.22642 * 11 10 9 25 25 C 1.37793 * 119.92211 * 359.49865 * 24 11 10 26 26 C 1.38577 * 120.33668 * 0.50402 * 25 24 11 27 27 C 1.38007 * 120.40451 * 359.74829 * 26 25 24 28 28 C 1.39844 * 119.66267 * 359.47373 * 6 5 4 29 29 F 1.35102 * 120.11070 * 180.25210 * 28 6 5 30 30 C 1.38313 * 119.77624 * 0.27611 * 28 6 5 31 31 C 1.38210 * 120.12284 * 359.97421 * 30 28 6 32 32 H 0.96703 * 114.00329 * 299.99773 * 1 2 3 33 33 H 1.09001 * 109.46962 * 239.99954 * 2 1 3 34 34 H 1.48504 * 109.99819 * 300.00081 * 3 2 1 35 35 H 1.48493 * 110.00046 * 61.31937 * 3 2 1 36 36 H 1.08000 * 120.06990 * 0.02795 * 5 4 2 37 37 H 0.97000 * 119.99592 * 5.28194 * 9 7 6 38 38 H 0.96994 * 120.00156 * 0.02562 * 14 12 11 39 39 H 1.09003 * 109.47052 * 300.00130 * 17 15 14 40 40 H 1.09000 * 109.47234 * 59.99499 * 17 15 14 41 41 H 1.09001 * 109.46760 * 60.00195 * 18 17 15 42 42 H 1.09003 * 109.46770 * 179.97438 * 18 17 15 43 43 H 0.96696 * 114.00171 * 180.02562 * 21 19 18 44 44 H 1.08996 * 109.47657 * 59.99466 * 22 19 18 45 45 H 1.09000 * 109.47467 * 179.97438 * 22 19 18 46 46 H 1.08997 * 109.47526 * 300.00970 * 23 15 14 47 47 H 1.09003 * 109.47141 * 60.00373 * 23 15 14 48 48 H 1.08002 * 120.03334 * 179.72241 * 24 11 10 49 49 H 1.08002 * 119.83350 * 180.27189 * 25 24 11 50 50 H 1.07998 * 119.79490 * 179.77009 * 26 25 24 51 51 H 1.08002 * 119.96300 * 180.02562 * 27 26 25 52 52 H 1.08003 * 119.94060 * 179.97438 * 30 28 6 53 53 H 1.07997 * 119.83111 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6891 -2.0576 1.3928 6 6 2.1504 -2.7147 2.5359 7 6 1.8897 -4.1563 2.7191 8 8 2.2968 -4.7262 3.7128 9 7 1.2004 -4.8406 1.7847 10 6 0.8592 -6.1716 2.0073 11 6 0.8373 -7.0817 0.9399 12 6 1.1746 -6.6335 -0.4244 13 8 1.3848 -5.4560 -0.6429 14 7 1.2553 -7.5300 -1.4275 15 6 1.5897 -7.0848 -2.7826 16 1 2.2981 -6.2581 -2.7290 17 6 2.2165 -8.2439 -3.5601 18 6 2.5652 -7.7791 -4.9755 19 6 1.2931 -7.3159 -5.6881 20 1 0.5849 -8.1426 -5.7414 21 8 1.6189 -6.8813 -7.0098 22 6 0.6664 -6.1568 -4.9106 23 6 0.3179 -6.6212 -3.4956 24 6 0.4885 -8.4137 1.1759 25 6 0.1791 -8.8272 2.4533 26 6 0.2017 -7.9257 3.5056 27 6 0.5392 -6.6055 3.2871 28 6 2.8652 -2.0012 3.5032 29 9 3.3200 -2.6288 4.6099 30 6 3.1047 -0.6509 3.3233 31 6 2.6397 -0.0088 2.1913 32 1 -0.3934 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5614 2.4679 -1.2085 35 1 1.5878 2.4586 1.2242 36 1 1.1406 -2.6035 0.6394 37 1 0.9419 -4.4055 0.9572 38 1 1.0912 -8.4698 -1.2524 39 1 3.1226 -8.5743 -3.0521 40 1 1.5081 -9.0706 -3.6137 41 1 3.2735 -6.9523 -4.9221 42 1 3.0122 -8.6048 -5.5292 43 1 0.8584 -6.5726 -7.5210 44 1 1.3746 -5.3299 -4.8573 45 1 -0.2397 -5.8264 -5.4185 46 1 -0.3905 -7.4477 -3.5492 47 1 -0.1286 -5.7953 -2.9417 48 1 0.4650 -9.1193 0.3585 49 1 -0.0861 -9.8583 2.6349 50 1 -0.0460 -8.2585 4.5027 51 1 0.5549 -5.9091 4.1125 52 1 3.6562 -0.0973 4.0689 53 1 2.8297 1.0456 2.0555 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_12335834.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:10:12 Heat of formation + Delta-G solvation = -135.550552 kcal Electronic energy + Delta-G solvation = -40371.846885 eV Core-core repulsion = 35089.326331 eV Total energy + Delta-G solvation = -5282.520555 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 415.167 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.10530 -42.28551 -41.24024 -40.42616 -39.72775 -38.99251 -37.65932 -37.10368 -36.08902 -34.62301 -33.11365 -32.42173 -32.34614 -31.89060 -30.57152 -29.27304 -26.71810 -25.94870 -25.12193 -24.20686 -23.89234 -23.26832 -22.53748 -21.95255 -21.32773 -21.05702 -19.61611 -19.03639 -18.49873 -18.45580 -18.22505 -18.16604 -17.54187 -17.24420 -17.10714 -16.66222 -16.49839 -16.42528 -16.20357 -15.99750 -15.80809 -15.75704 -15.50187 -15.40723 -15.34918 -14.85598 -14.78377 -14.61248 -14.53670 -14.47313 -14.19129 -13.80586 -13.63457 -13.37697 -13.29890 -13.27130 -13.18824 -12.99343 -12.90405 -12.63087 -12.46113 -12.32685 -12.19183 -11.77227 -11.75653 -11.72728 -11.38582 -11.30172 -10.98082 -10.77682 -10.67901 -10.44112 -10.31366 -10.01318 -9.95947 -9.32116 -4.91051 -0.71127 -0.28075 -0.12210 0.22710 1.26007 1.45267 1.59419 1.69891 1.76282 1.95831 1.97874 2.33505 2.75521 2.93042 3.20077 3.25825 3.32726 3.46450 3.52314 3.52483 3.60631 3.69310 3.70236 3.89252 3.98924 4.00545 4.01519 4.09545 4.19603 4.27043 4.27815 4.31044 4.31997 4.38070 4.40536 4.42227 4.52478 4.63610 4.70847 4.72800 4.76982 4.85570 4.86757 4.93709 5.00241 5.01396 5.05597 5.08472 5.10712 5.16174 5.22709 5.27287 5.29811 5.40699 5.42527 5.50980 5.80938 6.11043 6.39357 6.46377 6.74971 6.86504 7.05833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.087 4.087 3 Si 0.774 3.226 4 C -0.131 4.131 5 C -0.026 4.026 6 C -0.193 4.193 7 C 0.553 3.447 8 O -0.544 6.544 9 N -0.652 5.652 10 C 0.183 3.817 11 C -0.184 4.184 12 C 0.565 3.435 13 O -0.574 6.574 14 N -0.703 5.703 15 C 0.145 3.855 16 H 0.068 0.932 17 C -0.114 4.114 18 C -0.112 4.112 19 C 0.103 3.897 20 H 0.071 0.929 21 O -0.590 6.590 22 C -0.144 4.144 23 C -0.120 4.120 24 C -0.057 4.057 25 C -0.136 4.136 26 C -0.070 4.070 27 C -0.153 4.153 28 C 0.143 3.857 29 F -0.132 7.132 30 C -0.147 4.147 31 C -0.046 4.046 32 H 0.388 0.612 33 H 0.126 0.874 34 H -0.303 1.303 35 H -0.266 1.266 36 H 0.139 0.861 37 H 0.426 0.574 38 H 0.416 0.584 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.394 0.606 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.167 0.833 49 H 0.166 0.834 50 H 0.151 0.849 51 H 0.119 0.881 52 H 0.176 0.824 53 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -2.040 -3.414 4.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.195 4.195 3 Si 0.678 3.322 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.197 4.197 7 C 0.343 3.657 8 O -0.422 6.422 9 N -0.302 5.302 10 C 0.086 3.914 11 C -0.189 4.189 12 C 0.354 3.646 13 O -0.456 6.456 14 N -0.354 5.354 15 C 0.041 3.959 16 H 0.086 0.914 17 C -0.152 4.152 18 C -0.150 4.150 19 C 0.045 3.955 20 H 0.089 0.911 21 O -0.398 6.398 22 C -0.183 4.183 23 C -0.159 4.159 24 C -0.076 4.076 25 C -0.154 4.154 26 C -0.089 4.089 27 C -0.174 4.174 28 C 0.122 3.878 29 F -0.110 7.110 30 C -0.165 4.165 31 C -0.063 4.063 32 H 0.238 0.762 33 H 0.144 0.856 34 H -0.231 1.231 35 H -0.192 1.192 36 H 0.157 0.843 37 H 0.271 0.729 38 H 0.254 0.746 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.243 0.757 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.185 0.815 49 H 0.183 0.817 50 H 0.169 0.831 51 H 0.137 0.863 52 H 0.194 0.806 53 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.163 -1.243 -3.236 3.657 hybrid contribution -1.735 -0.199 0.455 1.805 sum -2.898 -1.442 -2.781 4.268 Atomic orbital electron populations 1.86609 1.18170 1.80450 1.50253 1.25366 0.83733 1.12587 0.97766 0.94001 0.89990 0.70965 0.77239 1.20411 1.00744 0.93668 0.98302 1.21137 0.94755 0.94646 0.93988 1.19902 1.07879 0.92992 0.98919 1.18518 0.77401 0.87205 0.82568 1.90831 1.50997 1.70442 1.29918 1.43647 1.53974 1.10419 1.22145 1.17923 0.95644 0.83627 0.94204 1.19811 1.11630 0.95232 0.92268 1.18222 0.76071 0.85553 0.84761 1.90562 1.52248 1.18425 1.84318 1.45771 1.70460 1.11378 1.07794 1.21040 0.96657 0.97936 0.80277 0.91395 1.21708 1.02271 0.97225 0.94026 1.21420 0.96941 1.01748 0.94882 1.21904 0.96578 0.95270 0.81787 0.91096 1.86483 1.40093 1.86557 1.26667 1.22169 1.01500 0.98855 0.95756 1.21783 0.97480 1.01616 0.95031 1.21546 0.94394 0.92626 0.98990 1.21517 1.00700 1.01552 0.91664 1.21595 0.94450 0.91598 1.01244 1.21188 1.02342 0.98416 0.95440 1.18114 0.95005 0.91771 0.82876 1.91568 1.86212 1.82940 1.50263 1.21438 1.03062 0.91058 1.00955 1.21477 0.92707 1.01310 0.90851 0.76215 0.85638 1.23133 1.19230 0.84287 0.72885 0.74550 0.89930 0.88730 0.92317 0.90355 0.75650 0.92432 0.90352 0.89860 0.92860 0.81530 0.81654 0.83094 0.86267 0.80637 0.80931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.41 12.83 -148.98 -1.91 -2.32 16 2 C -0.09 0.22 2.80 71.24 0.20 0.42 16 3 Si 0.77 -4.04 29.87 68.60 2.05 -1.99 16 4 C -0.13 0.15 5.34 -19.90 -0.11 0.04 16 5 C -0.03 -0.09 9.17 22.53 0.21 0.11 16 6 C -0.19 -1.63 5.88 -20.05 -0.12 -1.75 16 7 C 0.55 7.36 7.49 86.73 0.65 8.01 16 8 O -0.54 -10.49 13.13 -3.95 -0.05 -10.55 16 9 N -0.65 -6.67 4.63 -305.71 -1.42 -8.09 16 10 C 0.18 1.66 6.25 38.62 0.24 1.90 16 11 C -0.18 -0.73 5.89 -19.98 -0.12 -0.84 16 12 C 0.56 2.47 7.72 86.69 0.67 3.14 16 13 O -0.57 -5.78 13.55 -3.99 -0.05 -5.83 16 14 N -0.70 1.93 5.03 -445.73 -2.24 -0.31 16 15 C 0.15 -0.28 2.46 44.99 0.11 -0.17 16 16 H 0.07 0.25 7.57 -2.39 -0.02 0.23 16 17 C -0.11 0.68 5.39 30.60 0.16 0.84 16 18 C -0.11 0.26 5.57 30.59 0.17 0.43 16 19 C 0.10 -0.26 3.47 30.59 0.11 -0.15 16 20 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 21 O -0.59 -0.41 13.32 -148.98 -1.98 -2.39 16 22 C -0.14 0.33 5.54 30.58 0.17 0.50 16 23 C -0.12 0.27 5.49 30.58 0.17 0.44 16 24 C -0.06 0.18 9.52 22.52 0.21 0.39 16 25 C -0.14 0.44 10.02 22.25 0.22 0.66 16 26 C -0.07 -0.10 10.03 22.30 0.22 0.12 16 27 C -0.15 -1.27 8.63 22.37 0.19 -1.08 16 28 C 0.14 1.06 7.29 22.68 0.17 1.23 16 29 F -0.13 -1.73 15.55 44.97 0.70 -1.03 16 30 C -0.15 0.12 10.01 22.28 0.22 0.34 16 31 C -0.05 0.19 8.66 22.32 0.19 0.38 16 32 H 0.39 -2.09 8.70 -74.06 -0.64 -2.73 16 33 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 35 H -0.27 0.90 7.00 99.48 0.70 1.60 16 36 H 0.14 0.49 6.42 -2.91 -0.02 0.47 16 37 H 0.43 3.72 4.36 -92.71 -0.40 3.32 16 38 H 0.42 -3.82 6.66 -92.71 -0.62 -4.43 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.39 -2.74 9.08 -74.06 -0.67 -3.41 16 44 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.17 -1.89 6.44 -2.91 -0.02 -1.90 16 49 H 0.17 -1.61 8.06 -2.91 -0.02 -1.63 16 50 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 51 H 0.12 1.42 6.53 -2.91 -0.02 1.40 16 52 H 0.18 -1.08 8.06 -2.91 -0.02 -1.10 16 53 H 0.17 -1.76 4.82 -2.91 -0.01 -1.77 16 Total: 0.00 -29.14 430.63 -2.25 -31.39 By element: Atomic # 1 Polarization: -12.54 SS G_CDS: -1.29 Total: -13.83 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 3.95 Total: 14.95 kcal Atomic # 7 Polarization: -4.74 SS G_CDS: -3.66 Total: -8.40 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -4.00 Total: -21.10 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.70 Total: -1.03 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.05 Total: -1.99 kcal Total: -29.14 -2.25 -31.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_12335834.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.161 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds