Wall clock time and date at job start Sat Mar 6 2021 16:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.46951 * 2 1 4 4 C 1.50703 * 109.46579 * 240.00049 * 2 1 3 5 5 C 1.37929 * 119.92058 * 299.72078 * 4 2 1 6 6 C 1.39620 * 119.87078 * 179.79514 * 5 4 2 7 7 C 1.47809 * 120.14617 * 180.20862 * 6 5 4 8 8 O 1.21550 * 119.99394 * 0.25477 * 7 6 5 9 9 N 1.34771 * 120.00262 * 180.25154 * 7 6 5 10 10 C 1.39188 * 119.99987 * 175.56950 * 9 7 6 11 11 C 1.40294 * 120.16963 * 215.53776 * 10 9 7 12 12 C 1.47511 * 120.19808 * 359.95797 * 11 10 9 13 13 O 1.21600 * 120.00035 * 5.45160 * 12 11 10 14 14 N 1.34779 * 120.00163 * 185.45386 * 12 11 10 15 15 C 1.46495 * 120.00010 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47528 * 325.00415 * 15 14 12 17 17 C 1.53006 * 109.46737 * 85.00352 * 15 14 12 18 18 C 1.53002 * 109.46998 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47023 * 300.00082 * 18 17 15 20 20 H 1.08995 * 109.47215 * 299.99645 * 19 18 17 21 21 O 1.42897 * 109.46972 * 179.97438 * 19 18 17 22 22 C 1.53006 * 109.47301 * 60.00104 * 19 18 17 23 23 C 1.52999 * 109.47013 * 204.99876 * 15 14 12 24 24 C 1.39683 * 119.60340 * 179.97438 * 11 10 9 25 25 C 1.37803 * 119.92229 * 0.02562 * 24 11 10 26 26 C 1.38574 * 120.33256 * 0.02562 * 25 24 11 27 27 C 1.38011 * 120.40840 * 359.69807 * 26 25 24 28 28 C 1.39567 * 119.71713 * 0.46113 * 6 5 4 29 29 C 1.38069 * 119.83739 * 359.77028 * 28 6 5 30 30 Br 1.89099 * 119.93674 * 179.97438 * 29 28 6 31 31 C 1.38375 * 119.91799 * 120.00305 * 4 2 1 32 32 H 0.96703 * 113.99625 * 300.00195 * 1 2 3 33 33 H 1.08995 * 109.47482 * 120.00245 * 2 1 3 34 34 H 1.48497 * 110.00206 * 299.99754 * 3 2 1 35 35 H 1.48495 * 110.00325 * 61.32359 * 3 2 1 36 36 H 1.07993 * 120.06767 * 0.02712 * 5 4 2 37 37 H 0.97000 * 119.99936 * 355.57675 * 9 7 6 38 38 H 0.96999 * 119.99402 * 0.02562 * 14 12 11 39 39 H 1.08997 * 109.47025 * 299.99888 * 17 15 14 40 40 H 1.09002 * 109.47060 * 59.99777 * 17 15 14 41 41 H 1.08993 * 109.47341 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47097 * 59.99642 * 18 17 15 43 43 H 0.96706 * 114.00131 * 60.00110 * 21 19 18 44 44 H 1.08997 * 109.47025 * 179.97438 * 22 19 18 45 45 H 1.09002 * 109.47060 * 59.99893 * 22 19 18 46 46 H 1.08995 * 109.47478 * 300.00202 * 23 15 14 47 47 H 1.09002 * 109.46991 * 60.00406 * 23 15 14 48 48 H 1.07997 * 120.04419 * 179.97438 * 24 11 10 49 49 H 1.07996 * 119.83362 * 179.97438 * 25 24 11 50 50 H 1.07997 * 119.79097 * 179.97438 * 26 25 24 51 51 H 1.07995 * 119.96472 * 180.28599 * 27 26 25 52 52 H 1.07997 * 120.08272 * 179.74661 * 28 6 5 53 53 H 1.07994 * 119.85410 * 359.97310 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6017 -2.0326 -1.4442 6 6 2.0640 -2.6886 -2.5868 7 6 1.7108 -4.1040 -2.8242 8 8 1.0125 -4.6982 -2.0261 9 7 2.1628 -4.7359 -3.9255 10 6 1.9078 -6.0926 -4.1034 11 6 2.8649 -6.9154 -4.7160 12 6 4.1464 -6.3477 -5.1758 13 8 4.4177 -5.1867 -4.9365 14 7 5.0165 -7.1156 -5.8611 15 6 6.2888 -6.5516 -6.3183 16 1 6.1449 -5.5072 -6.5950 17 6 7.3210 -6.6433 -5.1925 18 6 8.6501 -6.0548 -5.6701 19 6 9.1488 -6.8406 -6.8846 20 1 9.2925 -7.8850 -6.6076 21 8 10.3898 -6.2906 -7.3310 22 6 8.1166 -6.7489 -8.0103 23 6 6.7878 -7.3370 -7.5328 24 6 2.5969 -8.2754 -4.8881 25 6 1.3975 -8.7997 -4.4572 26 6 0.4539 -7.9840 -3.8535 27 6 0.7067 -6.6395 -3.6714 28 6 2.8656 -2.0035 -3.5012 29 6 3.1922 -0.6816 -3.2731 30 35 4.2786 0.2491 -4.5098 31 6 2.7267 -0.0364 -2.1403 32 1 -0.3933 0.4418 0.7651 33 1 1.7924 -0.5138 0.8899 34 1 1.5615 2.4679 -1.2085 35 1 1.5880 2.4585 1.2242 36 1 0.9843 -2.5584 -0.7312 37 1 2.6659 -4.2451 -4.5940 38 1 4.7997 -8.0416 -6.0523 39 1 6.9656 -6.0839 -4.3273 40 1 7.4650 -7.6877 -4.9158 41 1 9.3853 -6.1197 -4.8681 42 1 8.5064 -5.0104 -5.9472 43 1 11.0925 -6.3153 -6.6670 44 1 8.4720 -7.3084 -8.8756 45 1 7.9729 -5.7046 -8.2873 46 1 6.9318 -8.3813 -7.2561 47 1 6.0524 -7.2717 -8.3348 48 1 3.3284 -8.9153 -5.3591 49 1 1.1917 -9.8513 -4.5914 50 1 -0.4833 -8.4040 -3.5194 51 1 -0.0320 -6.0113 -3.1959 52 1 3.2298 -2.5064 -4.3849 53 1 2.9851 0.9976 -1.9659 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_12335870.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:10:54 Heat of formation + Delta-G solvation = -85.853147 kcal Electronic energy + Delta-G solvation = -39497.853433 eV Core-core repulsion = 34347.123893 eV Total energy + Delta-G solvation = -5150.729541 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 475.087 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.33382 -41.33034 -40.48934 -39.69505 -38.94880 -37.84515 -37.07771 -36.10373 -34.59639 -33.75165 -33.45765 -32.32281 -31.87280 -30.72170 -30.51024 -29.25733 -27.09122 -25.96378 -25.05260 -23.87468 -23.75470 -22.83110 -22.77201 -21.82958 -21.23335 -21.03991 -19.43518 -18.88031 -18.66236 -18.32444 -18.18010 -17.75773 -17.48430 -16.97297 -16.77119 -16.45278 -16.38326 -16.10966 -15.78963 -15.66689 -15.53910 -15.48374 -15.35864 -14.99269 -14.92177 -14.75815 -14.53937 -14.35499 -14.16357 -14.03837 -13.81585 -13.63971 -13.35539 -13.25525 -13.14151 -12.93685 -12.90713 -12.65510 -12.47411 -12.43872 -12.17695 -12.07615 -11.91700 -11.74561 -11.72373 -11.52129 -11.29451 -11.25253 -10.93025 -10.76116 -10.67819 -10.33490 -10.27554 -9.98128 -9.97468 -9.31210 -4.99275 -0.70956 -0.25363 -0.23738 0.25683 0.34936 1.16780 1.38509 1.54252 1.70918 1.80979 1.89886 1.99159 2.31755 2.77558 3.07840 3.21321 3.27375 3.51686 3.55164 3.63190 3.68589 3.71656 3.73320 3.79207 3.89724 4.02650 4.03178 4.10519 4.11148 4.18118 4.21241 4.29550 4.31404 4.33818 4.37097 4.42352 4.43887 4.44276 4.65464 4.68212 4.80775 4.83651 4.88550 4.95686 4.96890 5.02563 5.06018 5.10377 5.12512 5.18784 5.24797 5.28274 5.30481 5.32024 5.44284 5.45513 5.84500 6.11967 6.43202 6.52118 6.75680 6.87010 7.09082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.086 4.086 3 Si 0.755 3.245 4 C -0.077 4.077 5 C -0.022 4.022 6 C -0.140 4.140 7 C 0.561 3.439 8 O -0.543 6.543 9 N -0.649 5.649 10 C 0.180 3.820 11 C -0.181 4.181 12 C 0.563 3.437 13 O -0.571 6.571 14 N -0.704 5.704 15 C 0.146 3.854 16 H 0.071 0.929 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.103 3.897 20 H 0.070 0.930 21 O -0.590 6.590 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.058 4.058 25 C -0.136 4.136 26 C -0.073 4.073 27 C -0.153 4.153 28 C -0.045 4.045 29 C -0.099 4.099 30 Br -0.026 7.026 31 C -0.057 4.057 32 H 0.399 0.601 33 H 0.105 0.895 34 H -0.290 1.290 35 H -0.275 1.275 36 H 0.140 0.860 37 H 0.424 0.576 38 H 0.415 0.585 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.393 0.607 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.166 0.834 49 H 0.164 0.836 50 H 0.150 0.850 51 H 0.127 0.873 52 H 0.147 0.853 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -5.237 -0.435 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.194 4.194 3 Si 0.659 3.341 4 C -0.078 4.078 5 C -0.041 4.041 6 C -0.144 4.144 7 C 0.351 3.649 8 O -0.422 6.422 9 N -0.297 5.297 10 C 0.084 3.916 11 C -0.187 4.187 12 C 0.352 3.648 13 O -0.452 6.452 14 N -0.355 5.355 15 C 0.041 3.959 16 H 0.089 0.911 17 C -0.160 4.160 18 C -0.183 4.183 19 C 0.045 3.955 20 H 0.088 0.912 21 O -0.398 6.398 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.077 4.077 25 C -0.154 4.154 26 C -0.091 4.091 27 C -0.173 4.173 28 C -0.065 4.065 29 C -0.178 4.178 30 Br 0.060 6.940 31 C -0.076 4.076 32 H 0.251 0.749 33 H 0.123 0.877 34 H -0.217 1.217 35 H -0.201 1.201 36 H 0.158 0.842 37 H 0.267 0.733 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.243 0.757 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.183 0.817 49 H 0.182 0.818 50 H 0.168 0.832 51 H 0.145 0.855 52 H 0.165 0.835 53 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.126 -3.817 -1.286 5.098 hybrid contribution -1.094 -0.242 1.068 1.548 sum 2.032 -4.059 -0.218 4.544 Atomic orbital electron populations 1.86543 1.17947 1.80845 1.51317 1.25016 0.84608 1.12089 0.97670 0.94250 0.90366 0.71885 0.77624 1.19397 0.98305 0.93476 0.96666 1.21263 0.94284 0.93669 0.94918 1.19730 1.03393 0.93109 0.98134 1.18448 0.78999 0.86769 0.80669 1.90765 1.37547 1.67501 1.46370 1.43486 1.54849 1.08520 1.22883 1.17908 0.93269 0.83218 0.97240 1.19817 0.94123 0.95332 1.09398 1.18235 0.83612 0.85480 0.77447 1.90632 1.78001 1.18440 1.58170 1.45790 1.18199 1.15691 1.55808 1.21031 0.82029 0.98619 0.94172 0.91055 1.21795 0.94286 1.02125 0.97791 1.22174 0.97319 1.00267 0.98499 1.21910 0.83931 0.96331 0.93370 0.91217 1.86484 1.22566 1.85389 1.45370 1.21416 0.93552 1.02027 0.97990 1.21693 0.96455 1.00491 0.96515 1.21529 0.97995 0.91928 0.96279 1.21516 0.93241 1.01838 0.98812 1.21613 1.00476 0.92118 0.94915 1.21347 0.95725 0.97477 1.02737 1.21402 0.93992 0.92660 0.98464 1.21671 1.03202 0.95502 0.97449 1.96827 1.65520 1.74953 1.56701 1.21359 0.94719 1.00382 0.91141 0.74939 0.87676 1.21719 1.20126 0.84196 0.73265 0.74610 0.93153 0.90079 0.90525 0.92368 0.75678 0.90364 0.92216 0.88915 0.89609 0.81675 0.81848 0.83188 0.85492 0.83511 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.34 12.74 -148.98 -1.90 -3.24 16 2 C -0.09 0.03 2.81 71.24 0.20 0.23 16 3 Si 0.76 -1.74 29.78 68.60 2.04 0.30 16 4 C -0.08 -0.28 5.42 -19.90 -0.11 -0.39 16 5 C -0.02 -0.15 9.16 22.53 0.21 0.05 16 6 C -0.14 -1.11 5.87 -20.09 -0.12 -1.23 16 7 C 0.56 6.17 7.61 86.78 0.66 6.83 16 8 O -0.54 -8.53 13.79 -3.87 -0.05 -8.58 16 9 N -0.65 -5.45 4.48 -305.58 -1.37 -6.82 16 10 C 0.18 1.32 6.30 38.63 0.24 1.56 16 11 C -0.18 -0.46 5.89 -19.98 -0.12 -0.58 16 12 C 0.56 1.74 7.71 86.69 0.67 2.41 16 13 O -0.57 -5.04 13.65 -4.03 -0.06 -5.10 16 14 N -0.70 2.62 5.03 -445.71 -2.24 0.38 16 15 C 0.15 -0.39 2.45 44.99 0.11 -0.28 16 16 H 0.07 0.17 7.58 -2.39 -0.02 0.15 16 17 C -0.12 0.24 5.50 30.60 0.17 0.41 16 18 C -0.14 0.30 5.55 30.60 0.17 0.47 16 19 C 0.10 -0.27 3.47 30.60 0.11 -0.16 16 20 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 21 O -0.59 -0.41 13.32 -148.98 -1.98 -2.39 16 22 C -0.11 0.32 5.57 30.58 0.17 0.49 16 23 C -0.11 0.77 5.39 30.58 0.16 0.93 16 24 C -0.06 0.24 9.52 22.52 0.21 0.45 16 25 C -0.14 0.56 10.02 22.25 0.22 0.79 16 26 C -0.07 -0.02 10.03 22.30 0.22 0.21 16 27 C -0.15 -1.02 8.68 22.37 0.19 -0.82 16 28 C -0.04 -0.24 9.28 22.55 0.21 -0.03 16 29 C -0.10 -0.40 6.22 22.27 0.14 -0.26 16 30 Br -0.03 -0.08 33.69 -20.37 -0.69 -0.76 16 31 C -0.06 -0.14 8.41 22.35 0.19 0.05 16 32 H 0.40 -2.39 8.74 -74.06 -0.65 -3.03 16 33 H 0.11 -0.48 7.96 -2.39 -0.02 -0.50 16 34 H -0.29 -1.32 7.11 99.48 0.71 -0.61 16 35 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 36 H 0.14 1.13 7.65 -2.91 -0.02 1.11 16 37 H 0.42 2.93 4.63 -92.71 -0.43 2.50 16 38 H 0.42 -4.17 6.66 -92.71 -0.62 -4.79 16 39 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.39 -2.69 9.08 -74.05 -0.67 -3.36 16 44 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.17 -1.99 6.44 -2.91 -0.02 -2.00 16 49 H 0.16 -1.69 8.06 -2.91 -0.02 -1.71 16 50 H 0.15 -0.59 8.06 -2.91 -0.02 -0.62 16 51 H 0.13 1.29 6.24 -2.91 -0.02 1.28 16 52 H 0.15 0.58 6.41 -2.91 -0.02 0.56 16 53 H 0.16 -0.24 4.86 -2.91 -0.01 -0.25 16 Total: 0.00 -25.10 447.19 -3.64 -28.74 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -1.30 Total: -13.65 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 3.91 Total: 11.13 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -3.61 Total: -6.44 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -3.99 Total: -19.32 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.04 Total: 0.30 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.69 Total: -0.76 kcal Total: -25.10 -3.64 -28.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_12335870.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.118 kcal (2) G-P(sol) polarization free energy of solvation -25.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds