Wall clock time and date at job start Sat Mar 6 2021 16:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46921 * 2 1 4 4 C 1.50691 * 109.47382 * 120.00194 * 2 1 3 5 5 C 1.38562 * 120.32548 * 244.99818 * 4 2 1 6 6 N 1.31519 * 120.90829 * 180.02562 * 5 4 2 7 7 C 1.32735 * 121.63925 * 359.97438 * 6 5 4 8 8 C 1.48126 * 119.72272 * 179.97438 * 7 6 5 9 9 O 1.21509 * 119.99772 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99956 * 0.02562 * 8 7 6 11 11 C 1.39189 * 119.99899 * 185.28201 * 10 8 7 12 12 C 1.40288 * 120.16447 * 214.92027 * 11 10 8 13 13 C 1.47512 * 120.20072 * 359.97438 * 12 11 10 14 14 O 1.21590 * 120.00445 * 355.05540 * 13 12 11 15 15 N 1.34785 * 119.99803 * 175.05044 * 13 12 11 16 16 C 1.46493 * 119.99660 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47749 * 35.00188 * 16 15 13 18 18 C 1.53007 * 109.47080 * 155.00484 * 16 15 13 19 19 C 1.52998 * 109.47367 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46830 * 300.00050 * 19 18 16 21 21 H 1.08999 * 109.46727 * 299.99550 * 20 19 18 22 22 O 1.42898 * 109.47146 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47477 * 59.99720 * 20 19 18 24 24 C 1.52998 * 109.47319 * 299.99980 * 23 20 19 25 25 C 1.39685 * 119.59738 * 180.27328 * 12 11 10 26 26 C 1.37805 * 119.92353 * 359.46765 * 25 12 11 27 27 C 1.38574 * 120.33139 * 0.55594 * 26 25 12 28 28 C 1.38005 * 120.41074 * 359.69901 * 27 26 25 29 29 C 1.39327 * 120.55058 * 0.25025 * 7 6 5 30 30 C 1.38583 * 119.05794 * 359.52236 * 29 7 6 31 31 H 0.96708 * 113.99905 * 299.99336 * 1 2 3 32 32 H 1.09004 * 109.46906 * 240.00585 * 2 1 3 33 33 H 1.48500 * 110.00308 * 300.00350 * 3 2 1 34 34 H 1.48506 * 109.99932 * 61.32368 * 3 2 1 35 35 H 1.08002 * 119.54373 * 0.02960 * 5 4 2 36 36 H 0.97003 * 120.00212 * 5.26960 * 10 8 7 37 37 H 0.96994 * 120.00007 * 0.02562 * 15 13 12 38 38 H 1.08999 * 109.47071 * 59.99288 * 18 16 15 39 39 H 1.09007 * 109.46658 * 299.99559 * 18 16 15 40 40 H 1.08992 * 109.47114 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47099 * 59.99372 * 19 18 16 42 42 H 0.96710 * 114.00006 * 59.99068 * 22 20 19 43 43 H 1.08999 * 109.46829 * 60.00454 * 23 20 19 44 44 H 1.09004 * 109.47200 * 179.97438 * 23 20 19 45 45 H 1.08995 * 109.46872 * 179.97438 * 24 23 20 46 46 H 1.08999 * 109.47099 * 300.00301 * 24 23 20 47 47 H 1.08001 * 120.03613 * 179.74277 * 25 12 11 48 48 H 1.07994 * 119.83155 * 180.28135 * 26 25 12 49 49 H 1.08003 * 119.78892 * 179.72219 * 27 26 25 50 50 H 1.07994 * 119.96842 * 180.02562 * 28 27 26 51 51 H 1.08005 * 120.46997 * 179.71882 * 29 7 6 52 52 H 1.07994 * 120.75669 * 180.22113 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 2.6412 -0.0172 2.1976 6 7 3.0854 -0.6259 3.2756 7 6 2.8739 -1.9200 3.4816 8 6 3.3940 -2.5626 4.7106 9 8 3.2028 -3.7468 4.9045 10 7 4.0782 -1.8336 5.6144 11 6 4.6611 -2.4571 6.7139 12 6 4.7155 -1.7982 7.9512 13 6 4.1560 -0.4408 8.0942 14 8 3.7272 0.1459 7.1194 15 7 4.1201 0.1491 9.3056 16 6 3.5639 1.4969 9.4477 17 1 2.7335 1.6225 8.7529 18 6 3.0645 1.6941 10.8804 19 6 2.4842 3.1019 11.0291 20 6 3.5689 4.1358 10.7202 21 1 4.3992 4.0098 11.4151 22 8 3.0272 5.4508 10.8596 23 6 4.0684 3.9387 9.2876 24 6 4.6487 2.5308 9.1389 25 6 5.3084 -2.4327 9.0453 26 6 5.8249 -3.7027 8.9065 27 6 5.7699 -4.3507 7.6828 28 6 5.1921 -3.7346 6.5914 29 6 2.1718 -2.6801 2.5486 30 6 1.6877 -2.0639 1.4056 31 1 -0.3933 0.4417 0.7652 32 1 1.7923 -0.5138 -0.8901 33 1 1.5614 2.4680 -1.2084 34 1 1.5879 2.4586 1.2243 35 1 2.8322 1.0374 2.0645 36 1 4.1646 -0.8744 5.4986 37 1 4.4624 -0.3188 10.0832 38 1 3.8949 1.5685 11.5752 39 1 2.2920 0.9572 11.1005 40 1 2.1280 3.2422 12.0496 41 1 1.6539 3.2279 10.3342 42 1 2.6908 5.6457 11.7451 43 1 3.2381 4.0647 8.5928 44 1 4.8409 4.6756 9.0675 45 1 5.0041 2.3903 8.1182 46 1 5.4790 2.4049 9.8338 47 1 5.3578 -1.9303 10.0000 48 1 6.2788 -4.1937 9.7545 49 1 6.1815 -5.3442 7.5827 50 1 5.1527 -4.2463 5.6412 51 1 2.0043 -3.7340 2.7154 52 1 1.1368 -2.6261 0.6662 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_13287726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:12:36 Heat of formation + Delta-G solvation = -82.076232 kcal Electronic energy + Delta-G solvation = -37177.271967 eV Core-core repulsion = 32301.098298 eV Total energy + Delta-G solvation = -4876.173670 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.172 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.37503 -41.60266 -40.76112 -39.78245 -38.98683 -38.05261 -37.09639 -36.06144 -34.61555 -33.92819 -33.10991 -32.32802 -31.89681 -30.84389 -29.29084 -27.85815 -25.24942 -25.09941 -24.66303 -23.91166 -23.46812 -22.81693 -21.94450 -21.53541 -21.06271 -19.54082 -19.06842 -18.73854 -18.31017 -18.22885 -17.57813 -17.45140 -16.87856 -16.78947 -16.57314 -16.37893 -16.27763 -16.04874 -15.80188 -15.69766 -15.52700 -15.39148 -15.05839 -14.82396 -14.65403 -14.47047 -14.38859 -14.30272 -14.11834 -13.81629 -13.54267 -13.50471 -13.28316 -13.12836 -12.83450 -12.68841 -12.62591 -12.42020 -12.18663 -12.17662 -11.89064 -11.72755 -11.49719 -11.26669 -11.14989 -10.96109 -10.80136 -10.74081 -10.70027 -10.42397 -10.28941 -9.98509 -9.28406 -4.96606 -0.78434 -0.25256 0.01846 0.25282 1.20046 1.40867 1.55830 1.73581 1.79654 1.91373 1.98003 2.54002 2.78082 2.83058 3.26705 3.28899 3.43511 3.51536 3.52922 3.63233 3.66940 3.70298 3.74000 3.84225 4.02498 4.02955 4.06112 4.10215 4.17289 4.28736 4.31151 4.34366 4.35605 4.38719 4.42236 4.42622 4.54936 4.64145 4.77702 4.80732 4.86410 4.91470 4.93612 5.00215 5.04019 5.08476 5.09534 5.19758 5.22452 5.28767 5.30837 5.32984 5.42858 5.44308 5.83864 6.10820 6.36938 6.41820 6.51238 6.79379 6.88393 7.10645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.073 4.073 3 Si 0.758 3.242 4 C -0.134 4.134 5 C 0.097 3.903 6 N -0.465 5.465 7 C 0.058 3.942 8 C 0.568 3.432 9 O -0.539 6.539 10 N -0.643 5.643 11 C 0.179 3.821 12 C -0.184 4.184 13 C 0.560 3.440 14 O -0.572 6.572 15 N -0.704 5.704 16 C 0.145 3.855 17 H 0.063 0.937 18 C -0.117 4.117 19 C -0.144 4.144 20 C 0.103 3.897 21 H 0.073 0.927 22 O -0.591 6.591 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.057 4.057 26 C -0.136 4.136 27 C -0.069 4.069 28 C -0.151 4.151 29 C -0.107 4.107 30 C -0.049 4.049 31 H 0.388 0.612 32 H 0.143 0.857 33 H -0.293 1.293 34 H -0.282 1.282 35 H 0.180 0.820 36 H 0.432 0.568 37 H 0.416 0.584 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.395 0.605 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.166 0.834 48 H 0.166 0.834 49 H 0.154 0.846 50 H 0.125 0.875 51 H 0.156 0.844 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -0.523 5.481 6.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.183 4.183 3 Si 0.663 3.337 4 C -0.137 4.137 5 C -0.063 4.063 6 N -0.176 5.176 7 C -0.079 4.079 8 C 0.355 3.645 9 O -0.416 6.416 10 N -0.292 5.292 11 C 0.082 3.918 12 C -0.190 4.190 13 C 0.349 3.651 14 O -0.453 6.453 15 N -0.355 5.355 16 C 0.041 3.959 17 H 0.081 0.919 18 C -0.154 4.154 19 C -0.183 4.183 20 C 0.045 3.955 21 H 0.091 0.909 22 O -0.400 6.400 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.076 4.076 26 C -0.154 4.154 27 C -0.087 4.087 28 C -0.172 4.172 29 C -0.128 4.128 30 C -0.075 4.075 31 H 0.237 0.763 32 H 0.161 0.839 33 H -0.220 1.220 34 H -0.208 1.208 35 H 0.197 0.803 36 H 0.277 0.723 37 H 0.255 0.745 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.245 0.755 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.183 0.817 48 H 0.184 0.816 49 H 0.172 0.828 50 H 0.143 0.857 51 H 0.174 0.826 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.150 0.128 4.398 6.048 hybrid contribution -1.755 -0.309 0.329 1.812 sum 2.395 -0.181 4.728 5.303 Atomic orbital electron populations 1.86614 1.17776 1.80310 1.50203 1.25151 0.83779 1.11620 0.97748 0.94070 0.90331 0.72176 0.77102 1.21718 0.98286 0.95661 0.98008 1.23028 0.94040 1.00833 0.88370 1.67530 1.18726 1.09256 1.22103 1.20905 1.00507 0.90982 0.95480 1.18317 0.77507 0.85783 0.82848 1.90776 1.58101 1.15709 1.77017 1.43671 1.50173 1.14062 1.21274 1.18008 0.93889 0.93721 0.86145 1.19811 1.09208 0.96064 0.93894 1.18334 0.77767 0.85358 0.83597 1.90635 1.49440 1.66257 1.38932 1.45759 1.62862 1.17477 1.09406 1.21025 0.95696 0.80686 0.98525 0.91853 1.21718 1.02292 0.97208 0.94229 1.22178 0.98568 0.94295 1.03234 1.21889 0.95058 0.81754 0.96799 0.90916 1.86496 1.82489 1.32522 1.38477 1.21414 1.00786 0.96700 0.96115 1.21780 0.98515 0.93031 1.02260 1.21530 0.93826 0.95011 0.97224 1.21525 1.00643 0.94720 0.98546 1.21610 0.94690 1.00550 0.91897 1.21214 1.00238 0.94392 1.01324 1.22312 0.94961 1.02408 0.93138 1.21793 0.95339 0.93933 0.96389 0.76271 0.83920 1.22011 1.20825 0.80309 0.72276 0.74529 0.88619 0.90252 0.89140 0.92445 0.75507 0.92855 0.91324 0.92666 0.89561 0.81666 0.81647 0.82817 0.85699 0.82586 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.08 12.84 -148.98 -1.91 -1.83 16 2 C -0.07 0.24 2.82 71.23 0.20 0.44 16 3 Si 0.76 -2.52 29.91 68.60 2.05 -0.47 16 4 C -0.13 0.08 5.37 -19.69 -0.11 -0.03 16 5 C 0.10 0.23 9.84 84.82 0.83 1.06 16 6 N -0.47 -3.77 9.55 -184.93 -1.77 -5.54 16 7 C 0.06 0.53 6.75 41.90 0.28 0.81 16 8 C 0.57 7.14 7.53 86.87 0.65 7.79 16 9 O -0.54 -8.43 14.11 -3.74 -0.05 -8.49 16 10 N -0.64 -7.42 4.67 -305.31 -1.43 -8.84 16 11 C 0.18 1.62 6.25 38.63 0.24 1.86 16 12 C -0.18 -0.81 5.89 -19.98 -0.12 -0.93 16 13 C 0.56 3.26 7.72 86.69 0.67 3.93 16 14 O -0.57 -7.41 13.55 -4.00 -0.05 -7.46 16 15 N -0.70 1.23 5.03 -445.71 -2.24 -1.01 16 16 C 0.15 -0.11 2.46 45.00 0.11 0.00 16 17 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 18 C -0.12 0.72 5.39 30.60 0.16 0.88 16 19 C -0.14 0.63 5.55 30.60 0.17 0.80 16 20 C 0.10 -0.20 3.47 30.59 0.11 -0.09 16 21 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 22 O -0.59 -0.74 13.32 -148.98 -1.98 -2.72 16 23 C -0.11 -0.16 5.57 30.59 0.17 0.01 16 24 C -0.12 0.04 5.49 30.60 0.17 0.20 16 25 C -0.06 0.18 9.52 22.52 0.21 0.40 16 26 C -0.14 0.54 10.02 22.25 0.22 0.76 16 27 C -0.07 -0.01 10.03 22.29 0.22 0.22 16 28 C -0.15 -1.04 8.63 22.37 0.19 -0.85 16 29 C -0.11 -0.48 9.63 22.61 0.22 -0.26 16 30 C -0.05 0.00 9.83 22.45 0.22 0.22 16 31 H 0.39 -1.90 8.70 -74.05 -0.64 -2.55 16 32 H 0.14 -0.92 7.96 -2.38 -0.02 -0.93 16 33 H -0.29 -1.15 7.11 99.48 0.71 -0.45 16 34 H -0.28 -0.35 7.01 99.48 0.70 0.34 16 35 H 0.18 -0.34 4.86 -2.91 -0.01 -0.36 16 36 H 0.43 5.44 5.65 -92.71 -0.52 4.91 16 37 H 0.42 -3.60 6.66 -92.71 -0.62 -4.22 16 38 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.39 -2.87 9.08 -74.05 -0.67 -3.54 16 43 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 45 H 0.05 0.24 8.14 -2.39 -0.02 0.23 16 46 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.17 -1.86 6.44 -2.91 -0.02 -1.88 16 48 H 0.17 -1.73 8.06 -2.91 -0.02 -1.75 16 49 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 50 H 0.13 1.16 6.53 -2.91 -0.02 1.14 16 51 H 0.16 0.51 7.64 -2.91 -0.02 0.49 16 52 H 0.17 -0.75 8.06 -2.91 -0.02 -0.77 16 Total: 0.00 -27.55 423.40 -3.95 -31.50 By element: Atomic # 1 Polarization: -10.97 SS G_CDS: -1.41 Total: -12.38 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 4.84 Total: 17.24 kcal Atomic # 7 Polarization: -9.96 SS G_CDS: -5.43 Total: -15.39 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -4.00 Total: -20.50 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.05 Total: -0.47 kcal Total: -27.55 -3.95 -31.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_13287726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.575 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds