Wall clock time and date at job start Sat Mar 6 2021 16:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34659 * 124.84726 * 2 1 4 4 C 1.36796 * 108.38874 * 180.12158 * 3 2 1 5 5 C 1.47226 * 126.94345 * 179.87120 * 4 3 2 6 6 O 1.21628 * 119.99874 * 179.68303 * 5 4 3 7 7 N 1.34771 * 119.99922 * 359.68695 * 5 4 3 8 8 C 1.39207 * 119.99866 * 185.28086 * 7 5 4 9 9 C 1.40286 * 120.16679 * 214.92225 * 8 7 5 10 10 C 1.47509 * 120.20208 * 0.02562 * 9 8 7 11 11 O 1.21603 * 119.99710 * 355.05220 * 10 9 8 12 12 N 1.34767 * 120.00219 * 175.05209 * 10 9 8 13 13 C 1.46508 * 120.00125 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46802 * 34.99818 * 13 12 10 15 15 C 1.52999 * 109.47203 * 155.00104 * 13 12 10 16 16 C 1.52999 * 109.47003 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47310 * 299.99876 * 16 15 13 18 18 H 1.09000 * 109.46923 * 300.00196 * 17 16 15 19 19 O 1.42898 * 109.47386 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47312 * 59.99917 * 17 16 15 21 21 C 1.52998 * 109.46639 * 274.99780 * 13 12 10 22 22 C 1.39691 * 119.60126 * 180.29757 * 9 8 7 23 23 C 1.37792 * 119.91859 * 359.41821 * 22 9 8 24 24 C 1.38574 * 120.33888 * 0.58493 * 23 22 9 25 25 C 1.38013 * 120.40369 * 359.71344 * 24 23 22 26 26 C 1.46699 * 106.11016 * 359.61012 * 4 3 2 27 27 C 1.34477 * 106.33439 * 0.23963 * 26 4 3 28 28 C 1.50698 * 125.56823 * 179.97438 * 27 26 4 29 29 O 1.42900 * 109.47166 * 210.02482 * 28 27 26 30 30 Si 1.86296 * 109.47174 * 330.02573 * 28 27 26 31 31 H 1.09002 * 109.47127 * 270.33170 * 1 2 3 32 32 H 1.09004 * 109.47210 * 30.32685 * 1 2 3 33 33 H 1.08996 * 109.47337 * 150.33011 * 1 2 3 34 34 H 1.08002 * 125.80847 * 359.97438 * 3 2 1 35 35 H 0.96998 * 120.00393 * 5.27388 * 7 5 4 36 36 H 0.96997 * 120.00419 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47222 * 59.99674 * 15 13 12 38 38 H 1.09003 * 109.47150 * 300.00066 * 15 13 12 39 39 H 1.08997 * 109.46792 * 59.99843 * 16 15 13 40 40 H 1.09004 * 109.46967 * 179.97438 * 16 15 13 41 41 H 0.96697 * 114.00398 * 179.97438 * 19 17 16 42 42 H 1.08997 * 109.47152 * 59.99812 * 20 17 16 43 43 H 1.09000 * 109.47727 * 180.02562 * 20 17 16 44 44 H 1.09004 * 109.47135 * 60.00232 * 21 13 12 45 45 H 1.08997 * 109.47554 * 299.99577 * 21 13 12 46 46 H 1.07994 * 120.04318 * 179.70377 * 22 9 8 47 47 H 1.08000 * 119.83573 * 180.30120 * 23 22 9 48 48 H 1.07991 * 119.80311 * 179.73994 * 24 23 22 49 49 H 1.07998 * 119.96471 * 180.02562 * 25 24 23 50 50 H 1.08002 * 126.83162 * 180.22538 * 26 4 3 51 51 H 1.09003 * 109.47367 * 90.02558 * 28 27 26 52 52 H 0.96697 * 114.00143 * 180.02562 * 29 28 27 53 53 H 1.48500 * 110.00173 * 299.99944 * 30 28 27 54 54 H 1.48502 * 109.99966 * 61.31959 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5464 0.7175 -0.0028 5 6 4.7283 1.5953 -0.0064 6 8 5.8446 1.1122 -0.0028 7 7 4.5735 2.9341 -0.0137 8 6 5.6861 3.7628 -0.1281 9 6 5.7216 4.9924 0.5464 10 6 4.5808 5.4142 1.3810 11 8 3.5699 4.7391 1.4149 12 7 4.6588 6.5476 2.1059 13 6 3.5259 6.9661 2.9353 14 1 3.0323 6.0859 3.3471 15 6 4.0296 7.8499 4.0782 16 6 2.8464 8.2875 4.9439 17 6 1.8530 9.0766 4.0888 18 1 2.3471 9.9566 3.6769 19 8 0.7477 9.4848 4.8972 20 6 1.3494 8.1929 2.9458 21 6 2.5322 7.7551 2.0804 22 6 6.8414 5.8176 0.4183 23 6 7.9065 5.4151 -0.3577 24 6 7.8684 4.1999 -1.0226 25 6 6.7664 3.3767 -0.9106 26 6 3.5375 -0.7494 0.0051 27 6 2.2447 -1.1198 0.0064 28 6 1.7397 -2.5396 0.0132 29 8 0.4813 -2.6008 -0.6612 30 14 2.9654 -3.6389 -0.8585 31 1 -0.3633 0.0059 1.0277 32 1 -0.3634 0.8871 -0.5189 33 1 -0.3634 -0.8929 -0.5087 34 1 1.8767 2.1242 -0.0004 35 1 3.6868 3.3202 0.0607 36 1 5.4650 7.0862 2.0786 37 1 4.5232 8.7301 3.6663 38 1 4.7377 7.2879 4.6872 39 1 2.3524 7.4075 5.3556 40 1 3.2053 8.9168 5.7584 41 1 0.0769 9.9916 4.4194 42 1 0.8554 7.3129 3.3576 43 1 0.6420 8.7552 2.3363 44 1 2.1733 7.1254 1.2662 45 1 3.0257 8.6353 1.6687 46 1 6.8742 6.7678 0.9304 47 1 8.7736 6.0520 -0.4519 48 1 8.7063 3.8950 -1.6319 49 1 6.7444 2.4310 -1.4316 50 1 4.3980 -1.4021 0.0088 51 1 1.6170 -2.8768 1.0425 52 1 0.0957 -3.4869 -0.6948 53 1 3.1414 -3.1897 -2.2630 54 1 4.2693 -3.6088 -0.1484 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_13287730.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:12:41 Heat of formation + Delta-G solvation = -71.346484 kcal Electronic energy + Delta-G solvation = -37994.148372 eV Core-core repulsion = 33091.128500 eV Total energy + Delta-G solvation = -4903.019871 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.72599 -41.95240 -40.84020 -39.74893 -38.96361 -37.74187 -37.09705 -35.95540 -34.61223 -33.95888 -32.34899 -32.08248 -31.90075 -30.55971 -29.28770 -27.70562 -26.38411 -25.15156 -24.67877 -23.90043 -23.40738 -22.64682 -21.85112 -21.19956 -21.04003 -20.41038 -19.29794 -18.77404 -18.38372 -18.22276 -17.99638 -17.58932 -17.18991 -16.87629 -16.60484 -16.47455 -16.01092 -15.81320 -15.78463 -15.62485 -15.51133 -15.43600 -15.26972 -15.05752 -14.82675 -14.71600 -14.51033 -14.19752 -13.85700 -13.76025 -13.47752 -13.42229 -13.38353 -13.28072 -13.21548 -13.13594 -12.97048 -12.68799 -12.63824 -12.46716 -12.20188 -12.00573 -11.77760 -11.67527 -11.33797 -11.30135 -10.95171 -10.78250 -10.67186 -10.30848 -10.00377 -9.88550 -9.45776 -9.21764 -5.04979 -0.34142 0.12259 0.59532 0.86615 1.30590 1.63675 1.71766 1.78770 1.96042 1.99866 2.04436 2.22265 2.78588 3.10103 3.24866 3.52468 3.53291 3.60632 3.65165 3.68929 3.71743 3.75729 3.98942 3.99751 4.08845 4.10991 4.18543 4.21328 4.26879 4.29958 4.33335 4.35363 4.36944 4.41078 4.41276 4.43821 4.58052 4.62895 4.68315 4.78902 4.85723 4.93019 4.95991 5.00020 5.03977 5.07615 5.09519 5.18964 5.21766 5.27700 5.33815 5.38165 5.41571 5.42966 5.75965 5.84155 6.02668 6.27907 6.41376 6.81538 6.85632 6.93309 7.08623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.418 5.418 3 C 0.075 3.925 4 C -0.262 4.262 5 C 0.588 3.412 6 O -0.569 6.569 7 N -0.654 5.654 8 C 0.188 3.812 9 C -0.186 4.186 10 C 0.566 3.434 11 O -0.574 6.574 12 N -0.704 5.704 13 C 0.145 3.855 14 H 0.066 0.934 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.103 3.897 18 H 0.072 0.928 19 O -0.590 6.590 20 C -0.144 4.144 21 C -0.120 4.120 22 C -0.056 4.056 23 C -0.139 4.139 24 C -0.070 4.070 25 C -0.157 4.157 26 C -0.181 4.181 27 C 0.026 3.974 28 C -0.043 4.043 29 O -0.556 6.556 30 Si 0.808 3.192 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.199 0.801 35 H 0.425 0.575 36 H 0.416 0.584 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.394 0.606 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.168 0.832 47 H 0.166 0.834 48 H 0.150 0.850 49 H 0.116 0.884 50 H 0.134 0.866 51 H 0.106 0.894 52 H 0.411 0.589 53 H -0.309 1.309 54 H -0.300 1.300 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 3.463 -0.301 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.091 5.091 3 C -0.064 4.064 4 C -0.272 4.272 5 C 0.380 3.620 6 O -0.450 6.450 7 N -0.303 5.303 8 C 0.091 3.909 9 C -0.192 4.192 10 C 0.355 3.645 11 O -0.455 6.455 12 N -0.355 5.355 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.153 4.153 16 C -0.150 4.150 17 C 0.045 3.955 18 H 0.090 0.910 19 O -0.398 6.398 20 C -0.182 4.182 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.157 4.157 24 C -0.089 4.089 25 C -0.178 4.178 26 C -0.205 4.205 27 C -0.084 4.084 28 C -0.153 4.153 29 O -0.368 6.368 30 Si 0.715 3.285 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.216 0.784 35 H 0.269 0.731 36 H 0.254 0.746 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.244 0.756 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.185 0.815 47 H 0.183 0.817 48 H 0.168 0.832 49 H 0.134 0.866 50 H 0.151 0.849 51 H 0.124 0.876 52 H 0.265 0.735 53 H -0.238 1.238 54 H -0.228 1.228 Dipole moment (debyes) X Y Z Total from point charges -3.534 2.851 -0.267 4.548 hybrid contribution -0.220 0.885 -0.251 0.946 sum -3.753 3.736 -0.518 5.321 Atomic orbital electron populations 1.22796 0.73626 1.07386 1.05069 1.43816 1.08656 1.04080 1.52517 1.22339 0.89219 0.93234 1.01570 1.20143 0.92150 0.93543 1.21375 1.17787 0.88300 0.81622 0.74294 1.90737 1.27100 1.75867 1.51247 1.43564 1.10664 1.04963 1.71122 1.17945 0.88720 0.90172 0.94112 1.19798 0.97999 0.97549 1.03868 1.18197 0.86301 0.80747 0.79231 1.90559 1.33387 1.55064 1.66511 1.45771 1.19545 1.24186 1.45988 1.21040 0.86678 0.97463 0.90753 0.91555 1.21709 0.97758 1.00182 0.95618 1.21419 0.95131 1.00082 0.98378 1.21903 0.87134 0.96308 0.90193 0.91041 1.86484 1.35411 1.76567 1.41387 1.22169 0.98179 1.00514 0.97372 1.21786 0.95834 1.00328 0.97931 1.21535 0.90540 0.99001 0.96407 1.21493 0.99910 0.96652 0.97646 1.21579 0.96768 0.93467 0.97093 1.21190 0.94974 1.01383 1.00221 1.21612 0.95536 0.93475 1.09894 1.20252 0.89625 0.89167 1.09390 1.24397 0.94599 0.93162 1.03120 1.86238 1.33874 1.37737 1.78965 0.94857 0.75516 0.83410 0.74754 0.89587 0.88304 0.85854 0.78405 0.73102 0.74578 0.88673 0.90055 0.92424 0.90375 0.75624 0.92494 0.90196 0.92689 0.89814 0.81500 0.81669 0.83250 0.86611 0.84860 0.87630 0.73512 1.23781 1.22835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.12 10.71 127.77 1.37 1.25 16 2 N -0.42 -2.25 3.09 -533.21 -1.65 -3.89 16 3 C 0.07 0.55 10.83 83.92 0.91 1.46 16 4 C -0.26 -3.74 6.29 -19.04 -0.12 -3.86 16 5 C 0.59 10.29 7.53 86.61 0.65 10.94 16 6 O -0.57 -13.61 14.76 -4.12 -0.06 -13.67 16 7 N -0.65 -8.26 4.67 -306.06 -1.43 -9.69 16 8 C 0.19 2.08 6.25 38.62 0.24 2.32 16 9 C -0.19 -0.99 5.89 -19.98 -0.12 -1.11 16 10 C 0.57 2.98 7.72 86.69 0.67 3.65 16 11 O -0.57 -6.19 13.55 -4.04 -0.05 -6.24 16 12 N -0.70 1.45 5.03 -445.72 -2.24 -0.79 16 13 C 0.14 -0.22 2.46 44.99 0.11 -0.11 16 14 H 0.07 0.28 7.58 -2.39 -0.02 0.27 16 15 C -0.11 0.62 5.39 30.59 0.16 0.79 16 16 C -0.11 0.22 5.57 30.59 0.17 0.39 16 17 C 0.10 -0.26 3.47 30.59 0.11 -0.15 16 18 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 19 O -0.59 -0.42 13.32 -148.98 -1.98 -2.40 16 20 C -0.14 0.36 5.54 30.58 0.17 0.53 16 21 C -0.12 0.29 5.49 30.58 0.17 0.45 16 22 C -0.06 0.11 9.52 22.52 0.21 0.32 16 23 C -0.14 0.25 10.02 22.24 0.22 0.47 16 24 C -0.07 -0.23 10.03 22.30 0.22 -0.01 16 25 C -0.16 -1.68 8.63 22.37 0.19 -1.49 16 26 C -0.18 -2.58 9.49 23.62 0.22 -2.36 16 27 C 0.03 0.21 6.17 40.98 0.25 0.46 16 28 C -0.04 0.03 2.97 71.24 0.21 0.24 16 29 O -0.56 2.68 9.69 -148.98 -1.44 1.24 16 30 Si 0.81 0.27 31.23 68.60 2.14 2.42 16 31 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.10 -0.57 8.13 -2.39 -0.02 -0.59 16 33 H 0.12 -0.37 5.13 -2.39 -0.01 -0.38 16 34 H 0.20 0.27 7.46 -2.91 -0.02 0.25 16 35 H 0.42 4.26 5.27 -92.71 -0.49 3.77 16 36 H 0.42 -3.51 6.66 -92.71 -0.62 -4.13 16 37 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.39 -2.79 9.08 -74.06 -0.67 -3.46 16 42 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.08 -0.37 8.14 -2.39 -0.02 -0.38 16 44 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.17 -1.73 6.44 -2.91 -0.02 -1.75 16 47 H 0.17 -1.40 8.06 -2.91 -0.02 -1.42 16 48 H 0.15 -0.16 8.06 -2.92 -0.02 -0.19 16 49 H 0.12 1.74 6.53 -2.91 -0.02 1.72 16 50 H 0.13 2.17 6.74 -2.91 -0.02 2.15 16 51 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 52 H 0.41 -6.37 8.74 -74.06 -0.65 -7.02 16 53 H -0.31 -3.06 7.11 99.48 0.71 -2.35 16 54 H -0.30 -2.46 6.89 99.48 0.69 -1.78 16 Total: 0.00 -35.21 432.56 -2.10 -37.31 By element: Atomic # 1 Polarization: -17.05 SS G_CDS: -1.42 Total: -18.47 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.03 Total: 14.19 kcal Atomic # 7 Polarization: -9.05 SS G_CDS: -5.32 Total: -14.36 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -3.54 Total: -21.08 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.14 Total: 2.42 kcal Total: -35.21 -2.10 -37.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_13287730.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.036 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds