Wall clock time and date at job start Sat Mar 6 2021 16:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46904 * 2 1 4 4 C 1.50690 * 109.47205 * 120.00028 * 2 1 3 5 5 C 1.38067 * 119.80265 * 64.99989 * 4 2 1 6 6 C 1.38702 * 120.08597 * 179.97438 * 5 4 2 7 7 O 1.35654 * 120.15309 * 180.02562 * 6 5 4 8 8 C 1.40162 * 119.69903 * 0.02562 * 6 5 4 9 9 C 1.47493 * 120.19515 * 180.02562 * 8 6 5 10 10 O 1.21589 * 119.99982 * 0.02562 * 9 8 6 11 11 N 1.34772 * 119.99969 * 179.72317 * 9 8 6 12 12 C 1.39203 * 119.99836 * 174.72644 * 11 9 8 13 13 C 1.40284 * 120.16537 * 155.04184 * 12 11 9 14 14 C 1.47504 * 120.20257 * 359.97438 * 13 12 11 15 15 O 1.21592 * 120.00052 * 4.99050 * 14 13 12 16 16 N 1.34779 * 119.99919 * 184.98536 * 14 13 12 17 17 C 1.46503 * 119.99811 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47102 * 35.00008 * 17 16 14 19 19 C 1.53001 * 109.46865 * 155.00002 * 17 16 14 20 20 C 1.53006 * 109.46929 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47102 * 299.99996 * 20 19 17 22 22 H 1.08997 * 109.47258 * 299.99876 * 21 20 19 23 23 O 1.42902 * 109.47031 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.47225 * 60.00186 * 21 20 19 25 25 C 1.52999 * 109.47026 * 274.99912 * 17 16 14 26 26 C 1.39688 * 119.59852 * 179.97438 * 13 12 11 27 27 C 1.37800 * 119.92295 * 0.02562 * 26 13 12 28 28 C 1.38572 * 120.33240 * 359.97438 * 27 26 13 29 29 C 1.38011 * 120.41151 * 359.74405 * 28 27 26 30 30 C 1.39726 * 119.61355 * 0.27618 * 8 6 5 31 31 C 1.37787 * 119.90290 * 359.42426 * 30 8 6 32 32 H 0.96695 * 114.00056 * 300.00083 * 1 2 3 33 33 H 1.09002 * 109.47064 * 240.00075 * 2 1 3 34 34 H 1.48504 * 110.00335 * 299.99801 * 3 2 1 35 35 H 1.48498 * 110.00065 * 61.32077 * 3 2 1 36 36 H 1.07997 * 119.95417 * 359.97438 * 5 4 2 37 37 H 0.96702 * 113.99467 * 269.97457 * 7 6 5 38 38 H 0.97001 * 120.00517 * 354.72175 * 11 9 8 39 39 H 0.96999 * 120.00206 * 359.97438 * 16 14 13 40 40 H 1.08992 * 109.47537 * 299.99886 * 19 17 16 41 41 H 1.09003 * 109.46936 * 60.00415 * 19 17 16 42 42 H 1.08997 * 109.46963 * 60.00053 * 20 19 17 43 43 H 1.08998 * 109.46904 * 180.02562 * 20 19 17 44 44 H 0.96702 * 113.99797 * 180.02562 * 23 21 20 45 45 H 1.09003 * 109.46936 * 59.99374 * 24 21 20 46 46 H 1.08992 * 109.47537 * 179.97438 * 24 21 20 47 47 H 1.08997 * 109.47258 * 300.00000 * 25 17 16 48 48 H 1.08998 * 109.46826 * 60.00584 * 25 17 16 49 49 H 1.08000 * 120.04245 * 180.02562 * 26 13 12 50 50 H 1.07996 * 119.83601 * 179.97438 * 27 26 13 51 51 H 1.08004 * 119.79257 * 180.02562 * 28 27 26 52 52 H 1.08002 * 119.97029 * 180.27840 * 29 28 27 53 53 H 1.07995 * 120.04916 * 179.72450 * 30 8 6 54 54 H 1.08001 * 119.84800 * 180.29620 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6827 -2.0586 1.3939 6 6 2.1428 -2.7184 2.5239 7 8 1.8998 -4.0431 2.6857 8 6 2.8600 -2.0102 3.4978 9 6 3.3549 -2.7010 4.7033 10 8 3.1414 -3.8885 4.8543 11 7 4.0489 -2.0174 5.6346 12 6 4.4210 -2.6410 6.8223 13 6 5.5322 -2.1789 7.5430 14 6 6.3132 -1.0302 7.0467 15 8 5.9427 -0.4240 6.0599 16 7 7.4374 -0.6525 7.6871 17 6 8.2127 0.4888 7.1944 18 1 7.5353 1.2400 6.7883 19 6 9.0154 1.0956 8.3470 20 6 9.8256 2.2871 7.8323 21 6 10.7834 1.8171 6.7357 22 1 11.4604 1.0658 7.1421 23 8 11.5397 2.9301 6.2546 24 6 9.9807 1.2103 5.5831 25 6 9.1704 0.0193 6.0975 26 6 5.8947 -2.8131 8.7337 27 6 5.1615 -3.8861 9.1918 28 6 4.0643 -4.3401 8.4774 29 6 3.6904 -3.7201 7.3024 30 6 3.0990 -0.6447 3.3225 31 6 2.6399 -0.0067 2.1909 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5138 -0.8900 34 1 1.5615 2.4680 -1.2085 35 1 1.5879 2.4585 1.2242 36 1 1.1293 -2.6001 0.6410 37 1 1.0746 -4.2376 3.1510 38 1 4.2892 -1.0909 5.4774 39 1 7.7327 -1.1358 8.4745 40 1 8.3332 1.4301 9.1284 41 1 9.6928 0.3443 8.7530 42 1 9.1486 3.0385 7.4259 43 1 10.3978 2.7191 8.6533 44 1 12.1688 2.7053 5.5555 45 1 9.3036 1.9617 5.1768 46 1 10.6629 0.8759 4.8017 47 1 9.8477 -0.7319 6.5036 48 1 8.5985 -0.4129 5.2764 49 1 6.7487 -2.4630 9.2945 50 1 5.4432 -4.3757 10.1123 51 1 3.4955 -5.1816 8.8447 52 1 2.8314 -4.0770 6.7537 53 1 3.6470 -0.0912 4.0706 54 1 2.8292 1.0477 2.0540 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_13422076.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:13:16 Heat of formation + Delta-G solvation = -131.342645 kcal Electronic energy + Delta-G solvation = -39799.273625 eV Core-core repulsion = 34667.707322 eV Total energy + Delta-G solvation = -5131.566303 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.176 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.35842 -41.42394 -40.56738 -39.68646 -38.96227 -38.51136 -37.30996 -37.06688 -35.92478 -34.59051 -33.14808 -32.30257 -31.86357 -31.19913 -30.63934 -29.25651 -27.56104 -25.14306 -24.57504 -24.02176 -23.86483 -23.34459 -22.71029 -21.91463 -21.36102 -21.04380 -19.67816 -19.02695 -18.80510 -18.41550 -18.20673 -18.15364 -17.52475 -16.91598 -16.90375 -16.57515 -16.46703 -16.30347 -16.15868 -15.98881 -15.68811 -15.54022 -15.47112 -15.36753 -15.16931 -14.91116 -14.75979 -14.50238 -14.43593 -14.15644 -13.81187 -13.77482 -13.34784 -13.28913 -13.24449 -13.17650 -13.04842 -12.93398 -12.65916 -12.43205 -12.42039 -12.16685 -12.16204 -11.74765 -11.73068 -11.63975 -11.28518 -11.15115 -10.86788 -10.75205 -10.67680 -10.28614 -10.21187 -9.96610 -9.91382 -9.18173 -4.92660 -0.64468 -0.21780 0.05830 0.30433 1.23979 1.55538 1.58129 1.73764 1.84379 1.93707 1.99281 2.43018 2.82766 3.01370 3.28230 3.30144 3.38330 3.54811 3.55925 3.63227 3.66775 3.72614 3.75881 3.95573 4.03559 4.05871 4.11804 4.16885 4.22166 4.30592 4.33169 4.34978 4.35851 4.39408 4.44446 4.45027 4.57864 4.66619 4.68978 4.82850 4.89069 4.93173 4.96655 4.97565 5.03885 5.08846 5.11415 5.13421 5.14968 5.23023 5.25636 5.30782 5.34907 5.44982 5.47751 5.50568 5.88085 6.24208 6.42269 6.43255 6.64908 6.84521 6.88053 7.09493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.088 4.088 3 Si 0.768 3.232 4 C -0.063 4.063 5 C -0.134 4.134 6 C 0.164 3.836 7 O -0.493 6.493 8 C -0.183 4.183 9 C 0.553 3.447 10 O -0.531 6.531 11 N -0.654 5.654 12 C 0.190 3.810 13 C -0.193 4.193 14 C 0.568 3.432 15 O -0.575 6.575 16 N -0.703 5.703 17 C 0.145 3.855 18 H 0.074 0.926 19 C -0.114 4.114 20 C -0.111 4.111 21 C 0.102 3.898 22 H 0.068 0.932 23 O -0.589 6.589 24 C -0.144 4.144 25 C -0.122 4.122 26 C -0.054 4.054 27 C -0.145 4.145 28 C -0.069 4.069 29 C -0.166 4.166 30 C -0.056 4.056 31 C -0.132 4.132 32 H 0.388 0.612 33 H 0.131 0.869 34 H -0.300 1.300 35 H -0.273 1.273 36 H 0.145 0.855 37 H 0.409 0.591 38 H 0.427 0.573 39 H 0.416 0.584 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.394 0.606 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.165 0.835 50 H 0.162 0.838 51 H 0.149 0.851 52 H 0.134 0.866 53 H 0.147 0.853 54 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 1.971 5.621 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.196 4.196 3 Si 0.672 3.328 4 C -0.064 4.064 5 C -0.152 4.152 6 C 0.117 3.883 7 O -0.307 6.307 8 C -0.187 4.187 9 C 0.343 3.657 10 O -0.409 6.409 11 N -0.307 5.307 12 C 0.092 3.908 13 C -0.199 4.199 14 C 0.357 3.643 15 O -0.456 6.456 16 N -0.353 5.353 17 C 0.041 3.959 18 H 0.093 0.907 19 C -0.152 4.152 20 C -0.149 4.149 21 C 0.044 3.956 22 H 0.086 0.914 23 O -0.398 6.398 24 C -0.182 4.182 25 C -0.161 4.161 26 C -0.073 4.073 27 C -0.163 4.163 28 C -0.088 4.088 29 C -0.187 4.187 30 C -0.075 4.075 31 C -0.149 4.149 32 H 0.238 0.762 33 H 0.149 0.851 34 H -0.228 1.228 35 H -0.199 1.199 36 H 0.163 0.837 37 H 0.270 0.730 38 H 0.275 0.725 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.243 0.757 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.183 0.817 50 H 0.180 0.820 51 H 0.167 0.833 52 H 0.151 0.849 53 H 0.165 0.835 54 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.206 2.405 4.598 6.679 hybrid contribution -1.245 -0.496 0.204 1.355 sum 2.961 1.909 4.802 5.956 Atomic orbital electron populations 1.86605 1.17920 1.80440 1.50250 1.25366 0.83855 1.12265 0.98120 0.93890 0.90368 0.71553 0.76996 1.20514 0.95899 0.93665 0.96344 1.21381 1.01346 0.94421 0.98068 1.18642 0.94156 0.83316 0.92148 1.84715 1.47277 1.18553 1.80131 1.20303 1.07141 0.95341 0.95919 1.18536 0.77787 0.86336 0.83039 1.90757 1.56953 1.15363 1.77783 1.43960 1.53442 1.17809 1.15443 1.18005 0.92715 0.94213 0.85913 1.19698 0.97860 1.01620 1.00714 1.18205 0.80814 0.82803 0.82468 1.90465 1.70422 1.56926 1.27827 1.45775 1.24363 1.33329 1.31879 1.21057 0.92441 0.87417 0.94979 0.90748 1.21708 0.98924 0.97813 0.96763 1.21420 0.97547 0.97991 0.97984 1.21914 0.92336 0.87806 0.93572 0.91400 1.86483 1.57196 1.36550 1.59552 1.22162 0.99633 0.97671 0.98736 1.21794 0.97915 0.98180 0.98211 1.21503 0.99130 0.93967 0.92732 1.21478 0.95752 0.97401 1.01698 1.21611 0.96332 0.98369 0.92461 1.21456 1.01581 0.97474 0.98163 1.21390 0.96332 0.91786 0.97966 1.21217 0.99028 1.01275 0.93410 0.76206 0.85142 1.22792 1.19939 0.83750 0.73019 0.72512 0.74575 0.89521 0.89069 0.92019 0.90431 0.75673 0.92067 0.90544 0.90314 0.93021 0.81728 0.82045 0.83332 0.84874 0.83495 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.56 12.83 -148.98 -1.91 -2.47 16 2 C -0.09 0.16 2.79 71.23 0.20 0.36 16 3 Si 0.77 -2.59 29.86 68.60 2.05 -0.54 16 4 C -0.06 0.01 5.36 -19.83 -0.11 -0.10 16 5 C -0.13 -0.39 9.60 22.34 0.21 -0.18 16 6 C 0.16 1.07 6.72 22.85 0.15 1.23 16 7 O -0.49 -3.96 11.58 -68.77 -0.80 -4.76 16 8 C -0.18 -1.25 5.89 -20.01 -0.12 -1.36 16 9 C 0.55 5.87 7.56 86.68 0.66 6.53 16 10 O -0.53 -8.13 12.33 16.92 0.21 -7.93 16 11 N -0.65 -5.36 4.91 -305.84 -1.50 -6.86 16 12 C 0.19 1.42 6.43 38.62 0.25 1.67 16 13 C -0.19 -0.51 5.89 -19.99 -0.12 -0.63 16 14 C 0.57 1.53 7.72 86.69 0.67 2.20 16 15 O -0.57 -4.43 13.41 -4.00 -0.05 -4.49 16 16 N -0.70 2.89 5.03 -445.72 -2.24 0.65 16 17 C 0.15 -0.50 2.45 44.99 0.11 -0.39 16 18 H 0.07 0.08 7.58 -2.39 -0.02 0.06 16 19 C -0.11 0.84 5.39 30.60 0.16 1.01 16 20 C -0.11 0.40 5.57 30.60 0.17 0.57 16 21 C 0.10 -0.33 3.47 30.59 0.11 -0.22 16 22 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 23 O -0.59 0.01 13.32 -148.98 -1.98 -1.98 16 24 C -0.14 0.43 5.54 30.58 0.17 0.60 16 25 C -0.12 0.32 5.49 30.58 0.17 0.49 16 26 C -0.05 0.21 9.52 22.52 0.21 0.42 16 27 C -0.14 0.53 10.02 22.25 0.22 0.75 16 28 C -0.07 -0.05 10.03 22.30 0.22 0.17 16 29 C -0.17 -1.15 8.70 22.37 0.19 -0.96 16 30 C -0.06 -0.10 9.53 22.52 0.21 0.11 16 31 C -0.13 0.16 8.64 22.24 0.19 0.35 16 32 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 33 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 34 H -0.30 -1.35 7.11 99.48 0.71 -0.64 16 35 H -0.27 0.17 7.00 99.48 0.70 0.87 16 36 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.41 0.21 9.06 -74.06 -0.67 -0.46 16 38 H 0.43 2.83 3.84 -92.71 -0.36 2.48 16 39 H 0.42 -4.24 6.66 -92.71 -0.62 -4.85 16 40 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.39 -2.94 9.08 -74.06 -0.67 -3.62 16 45 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.17 -1.95 6.44 -2.91 -0.02 -1.97 16 50 H 0.16 -1.56 8.06 -2.91 -0.02 -1.59 16 51 H 0.15 -0.51 8.06 -2.91 -0.02 -0.54 16 52 H 0.13 1.35 5.81 -2.91 -0.02 1.34 16 53 H 0.15 -0.07 6.42 -2.91 -0.02 -0.09 16 54 H 0.16 -0.93 4.81 -2.91 -0.01 -0.94 16 Total: 0.00 -27.41 433.49 -4.19 -31.60 By element: Atomic # 1 Polarization: -13.94 SS G_CDS: -1.91 Total: -15.85 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 3.95 Total: 12.62 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: -3.74 Total: -6.21 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -4.54 Total: -21.62 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.05 Total: -0.54 kcal Total: -27.41 -4.19 -31.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_13422076.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.739 kcal (2) G-P(sol) polarization free energy of solvation -27.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds