Wall clock time and date at job start Sat Mar 6 2021 16:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.46820 * 2 1 4 4 C 1.50692 * 109.47440 * 119.99775 * 2 1 3 5 5 C 1.34179 * 125.43407 * 64.99994 * 4 2 1 6 6 C 1.47025 * 105.95437 * 179.97438 * 5 4 2 7 7 C 1.47344 * 127.19464 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99537 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00469 * 180.02562 * 7 6 5 10 10 C 1.39194 * 120.00184 * 175.57581 * 9 7 6 11 11 C 1.40288 * 120.16819 * 215.52933 * 10 9 7 12 12 C 1.47506 * 120.19734 * 359.97438 * 11 10 9 13 13 O 1.21586 * 120.00361 * 5.44649 * 12 11 10 14 14 N 1.34783 * 119.99700 * 185.44517 * 12 11 10 15 15 C 1.46497 * 119.99602 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47462 * 35.00104 * 15 14 12 17 17 C 1.53008 * 109.46758 * 155.00196 * 15 14 12 18 18 C 1.53003 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47286 * 300.00198 * 18 17 15 20 20 H 1.08999 * 109.46672 * 300.00072 * 19 18 17 21 21 O 1.42895 * 109.47016 * 180.02562 * 19 18 17 22 22 C 1.52996 * 109.47044 * 59.99798 * 19 18 17 23 23 C 1.52999 * 109.47419 * 299.99916 * 22 19 18 24 24 C 1.39688 * 119.60158 * 180.02562 * 11 10 9 25 25 C 1.37792 * 119.92303 * 0.02562 * 24 11 10 26 26 C 1.38580 * 120.33666 * 0.02562 * 25 24 11 27 27 C 1.38013 * 120.40311 * 359.67979 * 26 25 24 28 28 C 1.36439 * 105.61553 * 0.02562 * 6 5 4 29 29 O 1.33660 * 108.38804 * 359.73592 * 28 6 5 30 30 H 0.96697 * 114.00565 * 59.99767 * 1 2 3 31 31 H 1.08998 * 109.47128 * 240.00106 * 2 1 3 32 32 H 1.48501 * 110.00179 * 60.00148 * 3 2 1 33 33 H 1.48501 * 110.00057 * 181.32067 * 3 2 1 34 34 H 1.07998 * 127.01793 * 0.02562 * 5 4 2 35 35 H 0.97004 * 119.99761 * 355.57980 * 9 7 6 36 36 H 0.96996 * 119.99924 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.46809 * 299.99796 * 17 15 14 38 38 H 1.09002 * 109.46986 * 60.00232 * 17 15 14 39 39 H 1.08999 * 109.47324 * 59.99871 * 18 17 15 40 40 H 1.08996 * 109.47190 * 179.97438 * 18 17 15 41 41 H 0.96709 * 113.99922 * 179.97438 * 21 19 18 42 42 H 1.08999 * 109.47163 * 60.00574 * 22 19 18 43 43 H 1.09003 * 109.47027 * 180.02562 * 22 19 18 44 44 H 1.08999 * 109.47490 * 300.00458 * 23 22 19 45 45 H 1.09004 * 109.47246 * 180.02562 * 23 22 19 46 46 H 1.07995 * 120.04234 * 179.97438 * 24 11 10 47 47 H 1.08000 * 119.83500 * 180.02562 * 25 24 11 48 48 H 1.07991 * 119.79617 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.96640 * 180.32049 * 27 26 25 50 50 H 1.07998 * 125.80708 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7551 -2.0121 1.5036 6 6 2.4131 -2.2462 2.7974 7 6 2.5008 -3.5189 3.5347 8 8 1.9932 -4.5240 3.0752 9 7 3.1435 -3.5692 4.7183 10 6 3.1475 -4.7480 5.4585 11 6 3.1023 -4.7006 6.8599 12 6 3.0507 -3.4017 7.5570 13 8 2.9474 -2.3724 6.9181 14 7 3.1181 -3.3559 8.9024 15 6 3.0664 -2.0659 9.5948 16 1 2.4005 -1.3912 9.0569 17 6 2.5432 -2.2717 11.0179 18 6 2.4897 -0.9245 11.7413 19 6 3.8937 -0.3192 11.7966 20 1 4.5594 -0.9943 12.3345 21 8 3.8438 0.9386 12.4728 22 6 4.4169 -0.1136 10.3737 23 6 4.4705 -1.4607 9.6503 24 6 3.1075 -5.8908 7.5910 25 6 3.1573 -7.1010 6.9339 26 6 3.2030 -7.1444 5.5496 27 6 3.1924 -5.9770 4.8134 28 6 2.9246 -1.0385 3.1731 29 8 2.6312 -0.1430 2.2253 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 1.5614 2.4679 1.2085 33 1 3.5345 1.7704 -0.0322 34 1 1.2366 -2.7395 0.8966 35 1 3.6031 -2.7839 5.0543 36 1 3.2009 -4.1770 9.4121 37 1 1.5431 -2.7033 10.9784 38 1 3.2091 -2.9464 11.5558 39 1 1.8240 -0.2495 11.2035 40 1 2.1165 -1.0710 12.7549 41 1 4.7010 1.3805 12.5454 42 1 3.7512 0.5615 9.8359 43 1 5.4174 0.3173 10.4131 44 1 5.1361 -2.1357 10.1881 45 1 4.8436 -1.3142 8.6366 46 1 3.0733 -5.8627 8.6701 47 1 3.1609 -8.0203 7.5006 48 1 3.2424 -8.0976 5.0436 49 1 3.2230 -6.0192 3.7347 50 1 3.4764 -0.8406 4.0802 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11560734_13456056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:13:48 Heat of formation + Delta-G solvation = -98.043910 kcal Electronic energy + Delta-G solvation = -35775.756446 eV Core-core repulsion = 30929.397844 eV Total energy + Delta-G solvation = -4846.358602 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.161 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.72545 -41.98308 -40.85044 -39.75181 -38.91955 -37.94356 -37.10234 -35.83672 -34.60121 -33.99312 -32.32613 -32.16244 -32.01286 -30.53691 -29.32886 -26.70247 -25.54721 -24.99457 -24.01327 -23.63291 -22.75588 -22.19196 -21.75505 -21.14199 -20.63397 -19.34373 -18.85481 -18.70018 -18.29268 -18.08562 -17.59261 -17.36367 -17.11966 -16.64458 -16.39474 -16.16420 -15.95329 -15.79725 -15.73972 -15.59351 -15.49396 -15.22540 -14.85189 -14.71194 -14.47299 -14.24908 -14.14854 -14.09264 -13.74252 -13.62978 -13.46843 -13.37741 -13.15755 -13.05340 -12.70385 -12.65282 -12.54128 -12.31202 -12.06913 -11.87230 -11.56608 -11.41478 -11.10637 -10.91057 -10.86286 -10.75967 -10.53078 -10.28067 -9.99176 -9.79451 -9.20689 -5.11111 -0.29804 0.11494 0.40334 0.90236 1.12462 1.57533 1.67134 1.77286 1.94746 1.96584 2.00719 2.29426 2.81568 3.09860 3.25975 3.42878 3.52462 3.56393 3.58294 3.59520 3.68373 3.86822 3.89034 3.98614 3.99040 4.06361 4.14834 4.15597 4.23114 4.27760 4.29786 4.31002 4.39186 4.48521 4.52625 4.60079 4.71014 4.78107 4.80827 4.83666 4.89054 4.95287 4.99060 5.07880 5.12379 5.17036 5.20262 5.24452 5.35322 5.36969 5.46102 5.85619 5.88440 6.27443 6.42173 6.46804 6.62003 7.01665 7.11907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.036 4.036 3 Si 0.711 3.289 4 C -0.017 4.017 5 C -0.114 4.114 6 C -0.239 4.239 7 C 0.593 3.407 8 O -0.515 6.515 9 N -0.657 5.657 10 C 0.212 3.788 11 C -0.175 4.175 12 C 0.570 3.430 13 O -0.545 6.545 14 N -0.720 5.720 15 C 0.143 3.857 16 H 0.093 0.907 17 C -0.125 4.125 18 C -0.110 4.110 19 C 0.103 3.897 20 H 0.056 0.944 21 O -0.568 6.568 22 C -0.150 4.150 23 C -0.126 4.126 24 C -0.067 4.067 25 C -0.142 4.142 26 C -0.069 4.069 27 C -0.132 4.132 28 C 0.044 3.956 29 O -0.172 6.172 30 H 0.391 0.609 31 H 0.096 0.904 32 H -0.249 1.249 33 H -0.253 1.253 34 H 0.165 0.835 35 H 0.420 0.580 36 H 0.401 0.599 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.380 0.620 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.148 0.852 50 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 0.110 0.510 3.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.145 4.145 3 Si 0.610 3.390 4 C -0.065 4.065 5 C -0.134 4.134 6 C -0.244 4.244 7 C 0.382 3.618 8 O -0.391 6.391 9 N -0.305 5.305 10 C 0.115 3.885 11 C -0.181 4.181 12 C 0.359 3.641 13 O -0.424 6.424 14 N -0.371 5.371 15 C 0.039 3.961 16 H 0.111 0.889 17 C -0.163 4.163 18 C -0.148 4.148 19 C 0.044 3.956 20 H 0.074 0.926 21 O -0.373 6.373 22 C -0.188 4.188 23 C -0.165 4.165 24 C -0.086 4.086 25 C -0.161 4.161 26 C -0.088 4.088 27 C -0.153 4.153 28 C -0.026 4.026 29 O -0.068 6.068 30 H 0.240 0.760 31 H 0.114 0.886 32 H -0.173 1.173 33 H -0.177 1.177 34 H 0.183 0.817 35 H 0.262 0.738 36 H 0.237 0.763 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.227 0.773 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.166 0.834 50 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.886 0.661 0.702 3.042 hybrid contribution 0.884 -0.768 0.757 1.395 sum 3.770 -0.107 1.459 4.044 Atomic orbital electron populations 1.86478 1.16317 1.82014 1.50222 1.23816 0.86234 1.11796 0.92666 0.95202 0.80824 0.76058 0.86899 1.21174 1.01399 0.92186 0.91754 1.22470 1.00519 0.95339 0.95041 1.21292 1.09905 0.93914 0.99249 1.17318 0.77247 0.87440 0.79752 1.90797 1.45910 1.35225 1.67141 1.43441 1.53050 1.14005 1.20000 1.17610 0.95551 0.86606 0.88776 1.19679 1.12385 0.93663 0.92323 1.18098 0.75510 0.88405 0.82130 1.90623 1.50530 1.35412 1.65851 1.45940 1.74822 1.09976 1.06319 1.21088 0.97484 0.84836 0.92723 0.88874 1.21776 1.02434 0.97923 0.94122 1.21400 0.96115 0.95594 1.01680 1.21843 0.97191 0.85336 0.91222 0.92592 1.86524 1.36432 1.34952 1.79436 1.22237 1.02118 0.97774 0.96671 1.21860 0.96733 0.96414 1.01479 1.21091 0.96811 0.91285 0.99408 1.21121 1.02422 0.97888 0.94677 1.21340 0.95102 0.98394 0.93953 1.21395 1.01547 0.90381 1.01933 1.24605 0.98938 0.86667 0.92393 1.83718 1.57386 1.39235 1.26489 0.76010 0.88629 1.17303 1.17700 0.81695 0.73835 0.76300 0.90303 0.90926 0.90706 0.90415 0.77277 0.90699 0.91223 0.91467 0.90951 0.85292 0.84978 0.84831 0.83444 0.76672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.15 12.86 -35.23 -0.45 -0.60 16 2 C -0.04 0.00 2.96 36.00 0.11 0.10 16 3 Si 0.71 -0.63 32.09 -169.99 -5.46 -6.08 16 4 C -0.02 -0.06 6.22 -35.74 -0.22 -0.28 16 5 C -0.11 -0.48 10.90 -37.45 -0.41 -0.89 16 6 C -0.24 -0.99 6.31 -103.28 -0.65 -1.64 16 7 C 0.59 3.04 7.65 -12.56 -0.10 2.94 16 8 O -0.51 -3.94 14.43 5.26 0.08 -3.86 16 9 N -0.66 -2.18 4.53 -10.68 -0.05 -2.23 16 10 C 0.21 0.68 6.30 -83.51 -0.53 0.16 16 11 C -0.17 -0.27 5.89 -104.81 -0.62 -0.89 16 12 C 0.57 0.94 7.71 -12.48 -0.10 0.84 16 13 O -0.55 -2.09 13.65 5.29 0.07 -2.02 16 14 N -0.72 0.85 5.03 -54.85 -0.28 0.57 16 15 C 0.14 -0.14 2.45 -67.93 -0.17 -0.31 16 16 H 0.09 0.10 7.58 -51.93 -0.39 -0.29 16 17 C -0.12 0.30 5.39 -26.73 -0.14 0.15 16 18 C -0.11 0.11 5.57 -26.73 -0.15 -0.04 16 19 C 0.10 -0.10 3.47 -26.73 -0.09 -0.19 16 20 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 21 O -0.57 -0.29 13.32 -35.23 -0.47 -0.75 16 22 C -0.15 0.19 5.55 -26.73 -0.15 0.04 16 23 C -0.13 0.16 5.49 -26.73 -0.15 0.01 16 24 C -0.07 0.05 9.52 -39.20 -0.37 -0.32 16 25 C -0.14 0.11 10.02 -39.62 -0.40 -0.29 16 26 C -0.07 -0.04 10.03 -39.54 -0.40 -0.43 16 27 C -0.13 -0.38 8.68 -39.43 -0.34 -0.72 16 28 C 0.04 0.10 11.61 30.08 0.35 0.45 16 29 O -0.17 -0.64 8.90 7.63 0.07 -0.57 16 30 H 0.39 -2.10 8.74 45.56 0.40 -1.71 16 31 H 0.10 -0.23 7.96 -51.93 -0.41 -0.64 16 32 H -0.25 -0.76 7.11 56.52 0.40 -0.35 16 33 H -0.25 -0.46 7.11 56.52 0.40 -0.06 16 34 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.42 0.84 5.57 -40.82 -0.23 0.61 16 36 H 0.40 -1.44 6.66 -40.82 -0.27 -1.71 16 37 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 38 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 39 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 41 H 0.38 -1.25 9.08 45.56 0.41 -0.84 16 42 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 44 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 45 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.13 -0.50 6.44 -52.49 -0.34 -0.84 16 47 H 0.13 -0.40 8.06 -52.49 -0.42 -0.83 16 48 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 49 H 0.15 0.58 6.24 -52.49 -0.33 0.25 16 50 H 0.22 -0.26 7.48 -52.49 -0.39 -0.65 16 LS Contribution 413.93 15.07 6.24 6.24 Total: 0.00 -12.19 413.93 -10.59 -22.78 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: -5.82 Total: -12.17 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -4.52 Total: -1.31 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.32 Total: -1.65 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.71 Total: -7.81 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: -5.46 Total: -6.08 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -12.19 -10.59 -22.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_13456056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.261 kcal (2) G-P(sol) polarization free energy of solvation -12.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds