Wall clock time and date at job start Sat Mar 6 2021 16:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.46820 * 2 1 4 4 C 1.50692 * 109.47440 * 119.99775 * 2 1 3 5 5 C 1.34179 * 125.43407 * 64.99994 * 4 2 1 6 6 C 1.47025 * 105.95437 * 179.97438 * 5 4 2 7 7 C 1.47344 * 127.19464 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99537 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00469 * 180.02562 * 7 6 5 10 10 C 1.39194 * 120.00184 * 175.57581 * 9 7 6 11 11 C 1.40288 * 120.16819 * 215.52933 * 10 9 7 12 12 C 1.47506 * 120.19734 * 359.97438 * 11 10 9 13 13 O 1.21586 * 120.00361 * 5.44649 * 12 11 10 14 14 N 1.34783 * 119.99700 * 185.44517 * 12 11 10 15 15 C 1.46497 * 119.99602 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47462 * 35.00104 * 15 14 12 17 17 C 1.53008 * 109.46758 * 155.00196 * 15 14 12 18 18 C 1.53003 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47286 * 300.00198 * 18 17 15 20 20 H 1.08999 * 109.46672 * 300.00072 * 19 18 17 21 21 O 1.42895 * 109.47016 * 180.02562 * 19 18 17 22 22 C 1.52996 * 109.47044 * 59.99798 * 19 18 17 23 23 C 1.52999 * 109.47419 * 299.99916 * 22 19 18 24 24 C 1.39688 * 119.60158 * 180.02562 * 11 10 9 25 25 C 1.37792 * 119.92303 * 0.02562 * 24 11 10 26 26 C 1.38580 * 120.33666 * 0.02562 * 25 24 11 27 27 C 1.38013 * 120.40311 * 359.67979 * 26 25 24 28 28 C 1.36439 * 105.61553 * 0.02562 * 6 5 4 29 29 O 1.33660 * 108.38804 * 359.73592 * 28 6 5 30 30 H 0.96697 * 114.00565 * 59.99767 * 1 2 3 31 31 H 1.08998 * 109.47128 * 240.00106 * 2 1 3 32 32 H 1.48501 * 110.00179 * 60.00148 * 3 2 1 33 33 H 1.48501 * 110.00057 * 181.32067 * 3 2 1 34 34 H 1.07998 * 127.01793 * 0.02562 * 5 4 2 35 35 H 0.97004 * 119.99761 * 355.57980 * 9 7 6 36 36 H 0.96996 * 119.99924 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.46809 * 299.99796 * 17 15 14 38 38 H 1.09002 * 109.46986 * 60.00232 * 17 15 14 39 39 H 1.08999 * 109.47324 * 59.99871 * 18 17 15 40 40 H 1.08996 * 109.47190 * 179.97438 * 18 17 15 41 41 H 0.96709 * 113.99922 * 179.97438 * 21 19 18 42 42 H 1.08999 * 109.47163 * 60.00574 * 22 19 18 43 43 H 1.09003 * 109.47027 * 180.02562 * 22 19 18 44 44 H 1.08999 * 109.47490 * 300.00458 * 23 22 19 45 45 H 1.09004 * 109.47246 * 180.02562 * 23 22 19 46 46 H 1.07995 * 120.04234 * 179.97438 * 24 11 10 47 47 H 1.08000 * 119.83500 * 180.02562 * 25 24 11 48 48 H 1.07991 * 119.79617 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.96640 * 180.32049 * 27 26 25 50 50 H 1.07998 * 125.80708 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7551 -2.0121 1.5036 6 6 2.4131 -2.2462 2.7974 7 6 2.5008 -3.5189 3.5347 8 8 1.9932 -4.5240 3.0752 9 7 3.1435 -3.5692 4.7183 10 6 3.1475 -4.7480 5.4585 11 6 3.1023 -4.7006 6.8599 12 6 3.0507 -3.4017 7.5570 13 8 2.9474 -2.3724 6.9181 14 7 3.1181 -3.3559 8.9024 15 6 3.0664 -2.0659 9.5948 16 1 2.4005 -1.3912 9.0569 17 6 2.5432 -2.2717 11.0179 18 6 2.4897 -0.9245 11.7413 19 6 3.8937 -0.3192 11.7966 20 1 4.5594 -0.9943 12.3345 21 8 3.8438 0.9386 12.4728 22 6 4.4169 -0.1136 10.3737 23 6 4.4705 -1.4607 9.6503 24 6 3.1075 -5.8908 7.5910 25 6 3.1573 -7.1010 6.9339 26 6 3.2030 -7.1444 5.5496 27 6 3.1924 -5.9770 4.8134 28 6 2.9246 -1.0385 3.1731 29 8 2.6312 -0.1430 2.2253 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 1.5614 2.4679 1.2085 33 1 3.5345 1.7704 -0.0322 34 1 1.2366 -2.7395 0.8966 35 1 3.6031 -2.7839 5.0543 36 1 3.2009 -4.1770 9.4121 37 1 1.5431 -2.7033 10.9784 38 1 3.2091 -2.9464 11.5558 39 1 1.8240 -0.2495 11.2035 40 1 2.1165 -1.0710 12.7549 41 1 4.7010 1.3805 12.5454 42 1 3.7512 0.5615 9.8359 43 1 5.4174 0.3173 10.4131 44 1 5.1361 -2.1357 10.1881 45 1 4.8436 -1.3142 8.6366 46 1 3.0733 -5.8627 8.6701 47 1 3.1609 -8.0203 7.5006 48 1 3.2424 -8.0976 5.0436 49 1 3.2230 -6.0192 3.7347 50 1 3.4764 -0.8406 4.0802 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_13456056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:13:47 Heat of formation + Delta-G solvation = -103.170257 kcal Electronic energy + Delta-G solvation = -35775.978741 eV Core-core repulsion = 30929.397844 eV Total energy + Delta-G solvation = -4846.580897 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.161 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.97923 -42.11888 -40.96776 -39.82061 -38.99782 -37.93260 -37.11263 -36.06462 -34.65110 -34.24989 -32.37002 -32.31407 -31.90960 -30.63687 -29.29482 -26.80078 -25.74232 -25.07095 -23.91301 -23.68865 -22.79140 -22.44394 -21.82843 -21.08951 -20.83361 -19.47433 -18.92010 -18.71947 -18.26034 -18.18292 -17.74582 -17.51635 -17.32620 -16.67231 -16.53927 -16.29240 -16.08022 -15.86080 -15.76027 -15.54806 -15.51772 -15.36629 -14.91371 -14.78785 -14.52774 -14.36563 -14.24883 -14.20423 -13.91920 -13.76031 -13.39689 -13.29182 -13.16308 -12.99621 -12.77015 -12.69322 -12.47796 -12.21529 -12.20889 -11.78703 -11.74813 -11.38285 -11.32472 -11.17115 -10.97604 -10.79563 -10.52752 -10.31595 -10.01714 -10.00391 -9.33542 -5.07940 -0.40366 -0.05201 0.28598 0.65433 1.14059 1.42890 1.64645 1.67755 1.76242 1.94757 1.99772 2.00092 2.74694 3.16856 3.23755 3.27046 3.51244 3.59356 3.65120 3.67739 3.69197 3.71116 3.98677 3.99594 4.07496 4.09172 4.17453 4.25763 4.27552 4.29147 4.31746 4.33960 4.36437 4.40093 4.40308 4.61500 4.64017 4.78380 4.84627 4.91931 4.95039 4.98701 5.02372 5.06314 5.08490 5.17376 5.20554 5.26376 5.29032 5.40460 5.42461 5.60570 5.82225 6.12932 6.38923 6.77656 6.81082 6.84272 7.04449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.046 4.046 3 Si 0.819 3.181 4 C -0.028 4.028 5 C -0.135 4.135 6 C -0.262 4.262 7 C 0.589 3.411 8 O -0.551 6.551 9 N -0.649 5.649 10 C 0.181 3.819 11 C -0.182 4.182 12 C 0.565 3.435 13 O -0.575 6.575 14 N -0.703 5.703 15 C 0.145 3.855 16 H 0.066 0.934 17 C -0.114 4.114 18 C -0.112 4.112 19 C 0.103 3.897 20 H 0.072 0.928 21 O -0.590 6.590 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.058 4.058 25 C -0.136 4.136 26 C -0.072 4.072 27 C -0.154 4.154 28 C 0.057 3.943 29 O -0.183 6.183 30 H 0.414 0.586 31 H 0.125 0.875 32 H -0.305 1.305 33 H -0.288 1.288 34 H 0.163 0.837 35 H 0.424 0.576 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.394 0.606 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.167 0.833 47 H 0.165 0.835 48 H 0.151 0.849 49 H 0.126 0.874 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -0.881 2.152 4.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.154 4.154 3 Si 0.724 3.276 4 C -0.075 4.075 5 C -0.155 4.155 6 C -0.266 4.266 7 C 0.380 3.620 8 O -0.430 6.430 9 N -0.296 5.296 10 C 0.085 3.915 11 C -0.188 4.188 12 C 0.354 3.646 13 O -0.456 6.456 14 N -0.354 5.354 15 C 0.040 3.960 16 H 0.085 0.915 17 C -0.152 4.152 18 C -0.151 4.151 19 C 0.044 3.956 20 H 0.090 0.910 21 O -0.399 6.399 22 C -0.183 4.183 23 C -0.159 4.159 24 C -0.077 4.077 25 C -0.154 4.154 26 C -0.091 4.091 27 C -0.174 4.174 28 C -0.013 4.013 29 O -0.079 6.079 30 H 0.268 0.732 31 H 0.143 0.857 32 H -0.233 1.233 33 H -0.215 1.215 34 H 0.181 0.819 35 H 0.266 0.734 36 H 0.255 0.745 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.244 0.756 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.184 0.816 47 H 0.183 0.817 48 H 0.169 0.831 49 H 0.144 0.856 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.520 -0.350 2.351 4.247 hybrid contribution 0.699 -0.460 0.350 0.906 sum 4.219 -0.809 2.701 5.074 Atomic orbital electron populations 1.86424 1.16261 1.82707 1.52115 1.24155 0.86498 1.12683 0.92105 0.94106 0.76965 0.72864 0.83711 1.21849 1.00865 0.92337 0.92453 1.22601 1.01408 0.95983 0.95506 1.21380 1.11210 0.94277 0.99752 1.17504 0.76988 0.87337 0.80154 1.90762 1.47760 1.36332 1.68153 1.43354 1.52443 1.14457 1.19384 1.17905 0.97373 0.86484 0.89775 1.19801 1.12689 0.94616 0.91671 1.18224 0.75407 0.88097 0.82908 1.90604 1.52008 1.36344 1.66647 1.45788 1.73575 1.10661 1.05407 1.21037 0.97259 0.84426 0.93246 0.91538 1.21709 1.03147 0.97507 0.92869 1.21425 0.95993 0.96071 1.01563 1.21911 0.97339 0.85169 0.91160 0.91026 1.86488 1.38020 1.35749 1.79623 1.22180 1.02191 0.97473 0.96470 1.21795 0.96662 0.96705 1.00723 1.21533 0.94800 0.90225 1.01150 1.21522 1.00609 0.99194 0.94093 1.21624 0.94315 0.98172 0.94944 1.21357 1.03306 0.91490 1.01254 1.25111 0.97795 0.85793 0.92577 1.83747 1.57587 1.39686 1.26900 0.73221 0.85727 1.23313 1.21549 0.81909 0.73369 0.74541 0.89916 0.88661 0.92486 0.90370 0.75630 0.92571 0.90261 0.89808 0.92614 0.81612 0.81750 0.83117 0.85606 0.73884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.34 12.86 -148.98 -1.92 -2.26 16 2 C -0.05 -0.02 2.96 71.23 0.21 0.19 16 3 Si 0.82 -1.17 32.09 68.60 2.20 1.04 16 4 C -0.03 -0.23 6.22 24.76 0.15 -0.08 16 5 C -0.14 -1.48 10.90 23.65 0.26 -1.22 16 6 C -0.26 -2.88 6.31 -19.00 -0.12 -3.00 16 7 C 0.59 7.94 7.65 86.64 0.66 8.60 16 8 O -0.55 -10.52 14.43 -4.08 -0.06 -10.58 16 9 N -0.65 -5.98 4.53 -305.96 -1.38 -7.36 16 10 C 0.18 1.49 6.30 38.62 0.24 1.74 16 11 C -0.18 -0.59 5.89 -19.99 -0.12 -0.71 16 12 C 0.56 2.05 7.71 86.69 0.67 2.71 16 13 O -0.57 -5.32 13.65 -3.99 -0.05 -5.37 16 14 N -0.70 2.32 5.03 -445.72 -2.24 0.08 16 15 C 0.14 -0.32 2.45 45.00 0.11 -0.21 16 16 H 0.07 0.24 7.58 -2.39 -0.02 0.23 16 17 C -0.11 0.69 5.39 30.60 0.16 0.85 16 18 C -0.11 0.24 5.57 30.60 0.17 0.41 16 19 C 0.10 -0.25 3.47 30.59 0.11 -0.15 16 20 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 21 O -0.59 -0.54 13.32 -148.98 -1.98 -2.52 16 22 C -0.14 0.36 5.55 30.59 0.17 0.53 16 23 C -0.12 0.34 5.49 30.59 0.17 0.51 16 24 C -0.06 0.21 9.52 22.51 0.21 0.42 16 25 C -0.14 0.49 10.02 22.25 0.22 0.71 16 26 C -0.07 -0.07 10.03 22.30 0.22 0.15 16 27 C -0.15 -1.19 8.68 22.37 0.19 -0.99 16 28 C 0.06 0.37 11.61 67.40 0.78 1.15 16 29 O -0.18 -1.64 8.90 4.40 0.04 -1.60 16 30 H 0.41 -4.76 8.74 -74.06 -0.65 -5.41 16 31 H 0.13 -0.69 7.96 -2.39 -0.02 -0.71 16 32 H -0.31 -2.41 7.11 99.48 0.71 -1.70 16 33 H -0.29 -1.26 7.11 99.48 0.71 -0.55 16 34 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.42 2.70 5.57 -92.71 -0.52 2.19 16 36 H 0.42 -4.03 6.66 -92.71 -0.62 -4.65 16 37 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.39 -2.69 9.08 -74.05 -0.67 -3.37 16 42 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 46 H 0.17 -1.92 6.44 -2.91 -0.02 -1.94 16 47 H 0.16 -1.63 8.06 -2.91 -0.02 -1.65 16 48 H 0.15 -0.50 8.06 -2.92 -0.02 -0.52 16 49 H 0.13 1.45 6.24 -2.91 -0.02 1.43 16 50 H 0.25 -0.25 7.48 -2.91 -0.02 -0.28 16 Total: 0.00 -32.78 413.93 -2.29 -35.07 By element: Atomic # 1 Polarization: -16.73 SS G_CDS: -1.38 Total: -18.11 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 4.49 Total: 11.62 kcal Atomic # 7 Polarization: -3.66 SS G_CDS: -3.63 Total: -7.28 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -3.97 Total: -22.34 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.20 Total: 1.04 kcal Total: -32.78 -2.29 -35.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_13456056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.098 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds