Wall clock time and date at job start Sat Mar 6 2021 16:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86303 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47382 * 239.99918 * 2 1 3 5 5 C 1.34855 * 125.88718 * 119.68876 * 4 2 1 6 6 C 1.40894 * 107.40968 * 179.88376 * 5 4 2 7 7 C 1.34849 * 107.42154 * 0.38067 * 6 5 4 8 8 C 1.50693 * 125.89091 * 179.80708 * 7 6 5 9 9 C 1.50706 * 109.47078 * 274.95571 * 8 7 6 10 10 O 1.21278 * 119.99452 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00412 * 180.02562 * 9 8 7 12 12 C 1.39285 * 120.00390 * 175.57082 * 11 9 8 13 13 C 1.40272 * 120.16242 * 215.51711 * 12 11 9 14 14 C 1.47515 * 120.19839 * 359.94857 * 13 12 11 15 15 O 1.21592 * 120.00208 * 5.44362 * 14 13 12 16 16 N 1.34782 * 119.99946 * 185.44687 * 14 13 12 17 17 C 1.46502 * 120.00058 * 179.97438 * 16 14 13 18 18 H 1.08997 * 109.47069 * 324.99882 * 17 16 14 19 19 C 1.53000 * 109.46910 * 85.00155 * 17 16 14 20 20 C 1.53003 * 109.47209 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46998 * 300.00220 * 20 19 17 22 22 H 1.09000 * 109.47120 * 299.99890 * 21 20 19 23 23 O 1.42899 * 109.46947 * 180.02562 * 21 20 19 24 24 C 1.53000 * 109.47320 * 59.99848 * 21 20 19 25 25 C 1.53000 * 109.46961 * 204.99824 * 17 16 14 26 26 C 1.39684 * 119.59943 * 179.97438 * 13 12 11 27 27 C 1.37798 * 119.92495 * 0.02562 * 26 13 12 28 28 C 1.38565 * 120.33000 * 0.02562 * 27 26 13 29 29 C 1.38022 * 120.40379 * 359.70644 * 28 27 26 30 30 N 1.36335 * 125.89079 * 299.99261 * 4 2 1 31 31 H 0.96696 * 114.00490 * 60.00446 * 1 2 3 32 32 H 1.09001 * 109.47366 * 119.99240 * 2 1 3 33 33 H 1.48500 * 109.99698 * 298.68059 * 3 2 1 34 34 H 1.48504 * 110.00153 * 59.99851 * 3 2 1 35 35 H 1.07995 * 126.29678 * 0.02562 * 5 4 2 36 36 H 1.08009 * 126.28798 * 180.12723 * 6 5 4 37 37 H 1.08998 * 109.47504 * 34.94953 * 8 7 6 38 38 H 1.08999 * 109.47346 * 154.95854 * 8 7 6 39 39 H 0.97006 * 119.99907 * 355.56452 * 11 9 8 40 40 H 0.96996 * 119.99886 * 0.02562 * 16 14 13 41 41 H 1.09005 * 109.47046 * 299.99620 * 19 17 16 42 42 H 1.09000 * 109.46990 * 59.99899 * 19 17 16 43 43 H 1.08997 * 109.47310 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.46642 * 59.99594 * 20 19 17 45 45 H 0.96695 * 114.00135 * 59.99825 * 23 21 20 46 46 H 1.09005 * 109.47046 * 180.02562 * 24 21 20 47 47 H 1.08997 * 109.47478 * 59.99884 * 24 21 20 48 48 H 1.09000 * 109.47457 * 300.00418 * 25 17 16 49 49 H 1.09003 * 109.46837 * 60.00585 * 25 17 16 50 50 H 1.07998 * 120.03883 * 179.97438 * 26 13 12 51 51 H 1.07995 * 119.83640 * 179.97438 * 27 26 13 52 52 H 1.07994 * 119.80143 * 179.97438 * 28 27 26 53 53 H 1.07997 * 119.97018 * 180.29430 * 29 28 27 54 54 H 0.96999 * 125.63781 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7050 -0.1709 -2.1942 6 6 2.9443 -1.1744 -3.1538 7 6 2.3007 -2.2864 -2.7441 8 6 2.2758 -3.6091 -3.4657 9 6 1.1826 -3.5950 -4.5029 10 8 0.4915 -2.6082 -4.6420 11 7 0.9722 -4.6794 -5.2751 12 6 -0.0956 -4.7013 -6.1691 13 6 -0.7898 -5.8964 -6.4089 14 6 -0.3923 -7.1370 -5.7167 15 8 0.4732 -7.1065 -4.8633 16 7 -0.9885 -8.3043 -6.0304 17 6 -0.5934 -9.5365 -5.3434 18 1 0.4753 -9.5074 -5.1311 19 6 -1.3709 -9.6607 -4.0316 20 6 -0.9588 -10.9478 -3.3143 21 6 -1.2693 -12.1509 -4.2071 22 1 -2.3380 -12.1795 -4.4194 23 8 -0.8850 -13.3531 -3.5369 24 6 -0.4919 -12.0267 -5.5189 25 6 -0.9036 -10.7399 -6.2359 26 6 -1.8592 -5.9048 -7.3074 27 6 -2.2249 -4.7429 -7.9517 28 6 -1.5365 -3.5642 -7.7133 29 6 -0.4812 -3.5392 -6.8241 30 7 1.6772 -2.0076 -1.5641 31 1 -0.3934 0.4416 -0.7650 32 1 1.7923 -0.5137 0.8900 33 1 1.5877 2.4585 -1.2243 34 1 1.5613 2.4680 1.2085 35 1 3.0753 0.8432 -2.2238 36 1 3.5315 -1.0708 -4.0543 37 1 3.2365 -3.7755 -3.9528 38 1 2.0876 -4.4097 -2.7503 39 1 1.5646 -5.4447 -5.2083 40 1 -1.6787 -8.3288 -6.7116 41 1 -1.1499 -8.8033 -3.3957 42 1 -2.4396 -9.6897 -4.2439 43 1 -1.5123 -11.0360 -2.3795 44 1 0.1100 -10.9191 -3.1021 45 1 -1.3396 -13.4970 -2.6958 46 1 -0.7135 -12.8836 -6.1551 47 1 0.5769 -11.9981 -5.3067 48 1 -1.9723 -10.7689 -6.4483 49 1 -0.3497 -10.6514 -7.1705 50 1 -2.3983 -6.8211 -7.4977 51 1 -3.0517 -4.7511 -8.6464 52 1 -1.8301 -2.6586 -8.2232 53 1 0.0474 -2.6156 -6.6401 54 1 1.1409 -2.6294 -1.0477 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_14644196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:13:56 Heat of formation + Delta-G solvation = -81.799651 kcal Electronic energy + Delta-G solvation = -37511.590407 eV Core-core repulsion = 32608.117252 eV Total energy + Delta-G solvation = -4903.473155 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.47914 -41.95379 -40.90190 -39.80046 -38.97324 -37.89590 -37.08125 -35.90548 -34.59329 -33.36965 -32.31855 -31.96735 -31.89926 -30.90790 -29.41458 -29.05305 -25.53581 -25.05425 -24.02686 -23.89827 -22.97328 -21.92116 -21.59174 -21.37403 -21.08859 -20.96869 -19.30720 -18.96608 -18.39441 -18.23972 -18.17511 -17.52160 -17.02419 -16.78784 -16.49071 -16.42632 -16.15684 -15.78681 -15.69574 -15.55632 -15.50686 -15.28943 -15.01673 -14.77612 -14.63886 -14.55113 -14.24575 -14.21131 -14.13276 -13.87921 -13.78403 -13.54414 -13.37849 -13.27988 -13.14773 -12.96455 -12.85014 -12.63483 -12.46164 -12.23585 -12.20404 -11.88339 -11.76849 -11.62136 -11.31134 -11.14624 -10.88741 -10.85582 -10.77652 -10.28608 -9.98021 -9.83745 -9.27417 -9.01876 -4.89195 -0.30043 0.23245 1.02336 1.28400 1.44811 1.66282 1.72846 1.80422 1.91647 1.98346 2.17746 2.44583 2.77956 3.25080 3.34086 3.53201 3.54568 3.62332 3.69039 3.74212 3.76928 3.83179 4.00260 4.05412 4.08414 4.09962 4.18888 4.27677 4.31339 4.35480 4.37783 4.39675 4.41179 4.43351 4.46867 4.55189 4.63095 4.75530 4.81248 4.85967 4.93558 4.99515 5.05073 5.07892 5.10116 5.20957 5.22157 5.22428 5.25191 5.28545 5.36443 5.42754 5.45386 5.86550 5.94372 6.09463 6.26897 6.35649 6.42827 6.59554 6.84518 6.95509 7.09606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.065 4.065 3 Si 0.802 3.198 4 C -0.016 4.016 5 C -0.199 4.199 6 C -0.192 4.192 7 C 0.030 3.970 8 C -0.064 4.064 9 C 0.512 3.488 10 O -0.548 6.548 11 N -0.656 5.656 12 C 0.186 3.814 13 C -0.185 4.185 14 C 0.565 3.435 15 O -0.571 6.571 16 N -0.706 5.706 17 C 0.146 3.854 18 H 0.072 0.928 19 C -0.121 4.121 20 C -0.144 4.144 21 C 0.102 3.898 22 H 0.069 0.931 23 O -0.589 6.589 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.060 4.060 27 C -0.141 4.141 28 C -0.075 4.075 29 C -0.154 4.154 30 N -0.538 5.538 31 H 0.385 0.615 32 H 0.126 0.874 33 H -0.290 1.290 34 H -0.296 1.296 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.426 0.574 40 H 0.415 0.585 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.393 0.607 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.163 0.837 51 H 0.160 0.840 52 H 0.146 0.854 53 H 0.127 0.873 54 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -4.754 -3.800 6.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.173 4.173 3 Si 0.706 3.294 4 C -0.129 4.129 5 C -0.224 4.224 6 C -0.217 4.217 7 C -0.084 4.084 8 C -0.104 4.104 9 C 0.301 3.699 10 O -0.425 6.425 11 N -0.304 5.304 12 C 0.089 3.911 13 C -0.191 4.191 14 C 0.354 3.646 15 O -0.452 6.452 16 N -0.357 5.357 17 C 0.042 3.958 18 H 0.090 0.910 19 C -0.160 4.160 20 C -0.183 4.183 21 C 0.044 3.956 22 H 0.087 0.913 23 O -0.398 6.398 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.079 4.079 27 C -0.159 4.159 28 C -0.094 4.094 29 C -0.174 4.174 30 N -0.133 5.133 31 H 0.235 0.765 32 H 0.144 0.856 33 H -0.216 1.216 34 H -0.224 1.224 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.269 0.731 40 H 0.253 0.747 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.243 0.757 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.181 0.819 51 H 0.178 0.822 52 H 0.164 0.836 53 H 0.145 0.855 54 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.703 -3.736 -3.109 4.911 hybrid contribution -1.662 -0.560 0.122 1.758 sum -2.364 -4.296 -2.987 5.742 Atomic orbital electron populations 1.86533 1.18924 1.80609 1.50166 1.25069 0.83073 1.12513 0.96638 0.93394 0.89986 0.69893 0.76171 1.20962 1.05979 0.85515 1.00456 1.20914 1.04917 1.00643 0.95902 1.20855 1.06427 0.92682 1.01694 1.19763 1.01989 0.97066 0.89600 1.20177 0.99551 0.94573 0.96082 1.21265 0.85173 0.81758 0.81733 1.90726 1.48793 1.33559 1.69390 1.43671 1.29005 1.20227 1.37499 1.17924 0.89086 0.93770 0.90313 1.19813 1.01144 0.92763 1.05373 1.18216 0.80984 0.83849 0.81545 1.90619 1.33630 1.86566 1.34379 1.45815 1.41491 1.06497 1.41884 1.21025 0.99501 0.83164 0.92124 0.90953 1.21798 1.00950 0.97168 0.96105 1.22174 1.02112 0.94604 0.99362 1.21913 0.98388 0.83133 0.92169 0.91307 1.86482 1.70415 1.42540 1.40352 1.21415 1.00352 0.98010 0.95186 1.21698 1.03776 0.91390 0.98327 1.21508 0.93481 1.00201 0.92724 1.21467 1.01416 0.91747 1.01311 1.21600 0.93196 0.99784 0.94832 1.21329 1.00635 0.97803 0.97659 1.41901 1.40849 1.11193 1.19361 0.76537 0.85608 1.21629 1.22352 0.82806 0.83817 0.83552 0.86068 0.73108 0.74696 0.93157 0.90216 0.90581 0.92258 0.75683 0.90355 0.92091 0.89037 0.89539 0.81937 0.82193 0.83578 0.85545 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.31 12.88 -148.98 -1.92 -5.23 16 2 C -0.06 -0.16 3.08 71.24 0.22 0.06 16 3 Si 0.80 0.32 30.58 68.60 2.10 2.42 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -1.05 9.37 22.14 0.21 -0.84 16 6 C -0.19 -1.17 10.76 22.14 0.24 -0.93 16 7 C 0.03 0.15 5.66 41.08 0.23 0.38 16 8 C -0.06 -0.02 6.24 29.10 0.18 0.17 16 9 C 0.51 3.35 7.66 87.66 0.67 4.02 16 10 O -0.55 -7.63 13.48 -3.02 -0.04 -7.67 16 11 N -0.66 -3.24 4.54 -302.94 -1.38 -4.62 16 12 C 0.19 1.13 6.30 38.60 0.24 1.37 16 13 C -0.19 -0.38 5.89 -19.99 -0.12 -0.49 16 14 C 0.56 1.32 7.71 86.69 0.67 1.99 16 15 O -0.57 -4.29 13.65 -4.01 -0.05 -4.34 16 16 N -0.71 2.86 5.03 -445.71 -2.24 0.62 16 17 C 0.15 -0.46 2.46 44.99 0.11 -0.35 16 18 H 0.07 0.11 7.58 -2.39 -0.02 0.10 16 19 C -0.12 0.29 5.49 30.60 0.17 0.46 16 20 C -0.14 0.37 5.54 30.59 0.17 0.54 16 21 C 0.10 -0.30 3.47 30.59 0.11 -0.19 16 22 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 23 O -0.59 -0.23 13.32 -148.98 -1.98 -2.22 16 24 C -0.11 0.36 5.57 30.58 0.17 0.53 16 25 C -0.11 0.81 5.39 30.58 0.16 0.97 16 26 C -0.06 0.23 9.52 22.52 0.21 0.44 16 27 C -0.14 0.49 10.02 22.24 0.22 0.71 16 28 C -0.08 -0.06 10.03 22.30 0.22 0.16 16 29 C -0.15 -0.98 8.68 22.37 0.19 -0.78 16 30 N -0.54 -2.54 6.07 -171.13 -1.04 -3.58 16 31 H 0.39 0.85 8.70 -74.06 -0.64 0.20 16 32 H 0.13 -0.02 7.96 -2.39 -0.02 -0.04 16 33 H -0.29 -1.66 7.11 99.48 0.71 -0.95 16 34 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 35 H 0.15 0.23 6.22 -2.91 -0.02 0.21 16 36 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 37 H 0.15 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.12 -0.37 8.14 -2.39 -0.02 -0.38 16 39 H 0.43 1.25 6.59 -92.70 -0.61 0.64 16 40 H 0.41 -4.15 6.66 -92.71 -0.62 -4.77 16 41 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 45 H 0.39 -2.79 9.08 -74.06 -0.67 -3.46 16 46 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 47 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 50 H 0.16 -1.86 6.44 -2.91 -0.02 -1.88 16 51 H 0.16 -1.48 8.06 -2.91 -0.02 -1.51 16 52 H 0.15 -0.43 8.06 -2.91 -0.02 -0.46 16 53 H 0.13 1.26 6.24 -2.91 -0.02 1.24 16 54 H 0.42 0.90 8.96 -92.71 -0.83 0.07 16 Total: 0.00 -27.40 437.30 -4.34 -31.74 By element: Atomic # 1 Polarization: -13.19 SS G_CDS: -2.34 Total: -15.53 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.56 Total: 8.41 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -4.66 Total: -7.58 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -4.00 Total: -19.46 kcal Atomic # 14 Polarization: 0.32 SS G_CDS: 2.10 Total: 2.42 kcal Total: -27.40 -4.34 -31.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_14644196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.061 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds