Wall clock time and date at job start Sat Mar 6 2021 16:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46627 * 2 1 4 4 C 1.50697 * 109.47264 * 240.00394 * 2 1 3 5 5 C 1.35461 * 125.56488 * 120.02149 * 4 2 1 6 6 C 1.39823 * 107.87147 * 179.97438 * 5 4 2 7 7 C 1.37909 * 107.08208 * 0.02562 * 6 5 4 8 8 C 1.46626 * 126.23484 * 179.97438 * 7 6 5 9 9 O 1.21699 * 119.99846 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99828 * 180.02562 * 8 7 6 11 11 C 1.39168 * 119.99839 * 175.57862 * 10 8 7 12 12 C 1.40292 * 120.16698 * 215.53260 * 11 10 8 13 13 C 1.47498 * 120.20328 * 359.97438 * 12 11 10 14 14 O 1.21599 * 119.99671 * 5.45345 * 13 12 11 15 15 N 1.34780 * 120.00076 * 185.44700 * 13 12 11 16 16 C 1.46496 * 119.99672 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.47537 * 324.99972 * 16 15 13 18 18 C 1.52998 * 109.47285 * 85.00106 * 16 15 13 19 19 C 1.53009 * 109.47102 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.46903 * 299.99992 * 19 18 16 21 21 H 1.08994 * 109.47688 * 299.99734 * 20 19 18 22 22 O 1.42902 * 109.46850 * 179.97438 * 20 19 18 23 23 C 1.53004 * 109.47458 * 60.00292 * 20 19 18 24 24 C 1.52998 * 109.46536 * 299.99627 * 23 20 19 25 25 C 1.39699 * 119.59578 * 180.02562 * 12 11 10 26 26 C 1.37792 * 119.92215 * 359.97438 * 25 12 11 27 27 C 1.38571 * 120.34053 * 0.02562 * 26 25 12 28 28 C 1.38006 * 120.40671 * 359.71760 * 27 26 25 29 29 N 1.35543 * 125.56031 * 299.70940 * 4 2 1 30 30 H 0.96696 * 114.00637 * 299.99903 * 1 2 3 31 31 H 1.08991 * 109.46997 * 119.99677 * 2 1 3 32 32 H 1.48500 * 110.00487 * 299.99788 * 3 2 1 33 33 H 1.48499 * 110.00061 * 61.32186 * 3 2 1 34 34 H 1.08009 * 126.06440 * 0.02562 * 5 4 2 35 35 H 1.07998 * 126.45657 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00090 * 355.57793 * 10 8 7 37 37 H 0.97001 * 119.99932 * 0.02562 * 15 13 12 38 38 H 1.08993 * 109.47501 * 299.99683 * 18 16 15 39 39 H 1.09005 * 109.47514 * 59.99986 * 18 16 15 40 40 H 1.08993 * 109.46810 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46731 * 60.00311 * 19 18 16 42 42 H 0.96709 * 114.00121 * 60.00121 * 22 20 19 43 43 H 1.08999 * 109.47316 * 179.97438 * 23 20 19 44 44 H 1.08999 * 109.46713 * 59.99274 * 23 20 19 45 45 H 1.09003 * 109.47540 * 299.99743 * 24 23 20 46 46 H 1.09004 * 109.46951 * 179.97438 * 24 23 20 47 47 H 1.07997 * 120.03452 * 180.02562 * 25 12 11 48 48 H 1.07999 * 119.82423 * 179.97438 * 26 25 12 49 49 H 1.07999 * 119.79489 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.96771 * 180.27828 * 28 27 26 51 51 H 0.97000 * 125.67546 * 0.02847 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7138 -0.1635 -2.1916 6 6 2.9579 -1.1456 -3.1564 7 6 2.3023 -2.2877 -2.7468 8 6 2.2786 -3.5734 -3.4513 9 8 2.8779 -3.7022 -4.5027 10 7 1.5932 -4.6124 -2.9346 11 6 1.4940 -5.8038 -3.6470 12 6 0.3163 -6.5640 -3.5887 13 6 -0.8231 -6.1056 -2.7719 14 8 -0.7822 -5.0197 -2.2264 15 7 -1.9097 -6.8904 -2.6304 16 6 -3.0416 -6.4349 -1.8196 17 1 -2.6727 -5.8532 -0.9748 18 6 -3.9636 -5.5635 -2.6748 19 6 -5.1462 -5.0882 -1.8281 20 6 -5.9240 -6.3006 -1.3124 21 1 -6.2926 -6.8821 -2.1573 22 8 -7.0280 -5.8567 -0.5211 23 6 -5.0019 -7.1720 -0.4571 24 6 -3.8195 -7.6472 -1.3038 25 6 0.2298 -7.7583 -4.3082 26 6 1.2979 -8.1814 -5.0690 27 6 2.4598 -7.4282 -5.1244 28 6 2.5583 -6.2435 -4.4234 29 7 1.6789 -2.0023 -1.5531 30 1 -0.3934 0.4416 0.7650 31 1 1.7923 -0.5137 0.8899 32 1 1.5614 2.4680 -1.2085 33 1 1.5878 2.4586 1.2243 34 1 3.0842 0.8510 -2.2091 35 1 3.5479 -1.0311 -4.0537 36 1 1.1692 -4.5298 -2.0661 37 1 -1.9422 -7.7568 -3.0653 38 1 -3.4095 -4.7000 -3.0426 39 1 -4.3327 -6.1451 -3.5197 40 1 -5.8032 -4.4679 -2.4375 41 1 -4.7775 -4.5067 -0.9832 42 1 -7.6554 -5.2977 -0.9997 43 1 -5.5562 -8.0355 -0.0893 44 1 -4.6333 -6.5904 0.3879 45 1 -4.1882 -8.2288 -2.1488 46 1 -3.1624 -8.2677 -0.6944 47 1 -0.6735 -8.3489 -4.2688 48 1 1.2295 -9.1051 -5.6242 49 1 3.2917 -7.7682 -5.7232 50 1 3.4655 -5.6598 -4.4752 51 1 1.1454 -2.6219 -1.0311 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_6580494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:16:30 Heat of formation + Delta-G solvation = -78.351913 kcal Electronic energy + Delta-G solvation = -36066.564049 eV Core-core repulsion = 31318.778018 eV Total energy + Delta-G solvation = -4747.786030 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.73851 -41.89471 -40.84710 -39.77866 -38.98062 -37.88109 -37.13428 -36.07605 -34.64972 -32.45473 -32.34227 -31.93926 -31.84610 -30.56968 -29.31820 -27.03244 -25.16650 -24.49424 -23.94358 -23.26696 -22.51707 -21.84211 -21.54177 -21.20873 -21.05023 -19.76528 -19.10271 -18.69141 -18.31435 -18.21971 -17.60608 -17.13699 -16.83656 -16.50674 -16.24374 -16.12378 -15.83537 -15.75988 -15.54982 -15.52784 -15.11810 -14.98365 -14.84048 -14.78786 -14.51806 -14.23140 -14.11452 -13.93613 -13.72494 -13.59414 -13.41965 -13.32409 -13.19098 -12.98533 -12.79856 -12.69357 -12.50464 -12.24965 -12.03632 -11.81265 -11.74739 -11.38281 -11.33841 -10.99327 -10.82543 -10.69626 -10.33995 -10.16315 -10.01210 -9.53424 -9.20904 -4.86490 -0.38749 0.04137 0.41383 1.16804 1.46904 1.63162 1.67521 1.79146 1.92897 1.94098 2.10221 2.12918 2.75368 3.19865 3.21604 3.49045 3.55129 3.58828 3.64720 3.71129 3.72626 3.96099 4.02834 4.03911 4.14421 4.15243 4.19560 4.23202 4.28732 4.29459 4.33164 4.36503 4.37548 4.40794 4.58853 4.78540 4.82111 4.87187 4.89226 4.94946 4.97211 5.02895 5.06138 5.06784 5.17289 5.18452 5.24015 5.29466 5.37937 5.42928 5.53353 5.72224 5.83364 6.09317 6.24763 6.37109 6.48271 6.76597 6.81345 7.02314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.076 4.076 3 Si 0.802 3.198 4 C 0.070 3.930 5 C -0.205 4.205 6 C -0.103 4.103 7 C -0.074 4.074 8 C 0.588 3.412 9 O -0.542 6.542 10 N -0.656 5.656 11 C 0.181 3.819 12 C -0.185 4.185 13 C 0.564 3.436 14 O -0.578 6.578 15 N -0.703 5.703 16 C 0.146 3.854 17 H 0.069 0.931 18 C -0.122 4.122 19 C -0.144 4.144 20 C 0.103 3.897 21 H 0.071 0.929 22 O -0.589 6.589 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.059 4.059 26 C -0.136 4.136 27 C -0.070 4.070 28 C -0.152 4.152 29 N -0.517 5.517 30 H 0.401 0.599 31 H 0.103 0.897 32 H -0.297 1.297 33 H -0.278 1.278 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.418 0.582 37 H 0.416 0.584 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.394 0.606 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.165 0.835 48 H 0.165 0.835 49 H 0.153 0.847 50 H 0.130 0.870 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -5.105 2.279 5.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.183 4.183 3 Si 0.704 3.296 4 C -0.049 4.049 5 C -0.228 4.228 6 C -0.130 4.130 7 C -0.187 4.187 8 C 0.380 3.620 9 O -0.420 6.420 10 N -0.302 5.302 11 C 0.084 3.916 12 C -0.190 4.190 13 C 0.353 3.647 14 O -0.459 6.459 15 N -0.354 5.354 16 C 0.042 3.958 17 H 0.087 0.913 18 C -0.160 4.160 19 C -0.183 4.183 20 C 0.045 3.955 21 H 0.089 0.911 22 O -0.397 6.397 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.078 4.078 26 C -0.154 4.154 27 C -0.089 4.089 28 C -0.172 4.172 29 N -0.113 5.113 30 H 0.252 0.748 31 H 0.121 0.879 32 H -0.224 1.224 33 H -0.204 1.204 34 H 0.192 0.808 35 H 0.175 0.825 36 H 0.260 0.740 37 H 0.255 0.745 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.243 0.757 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.183 0.817 48 H 0.183 0.817 49 H 0.171 0.829 50 H 0.148 0.852 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.524 -4.380 1.962 4.828 hybrid contribution -1.851 -0.074 0.450 1.906 sum -2.375 -4.454 2.411 5.594 Atomic orbital electron populations 1.86548 1.18301 1.81120 1.51468 1.24964 0.84344 1.13039 0.95941 0.93396 0.89908 0.69492 0.76824 1.20391 1.01641 0.84155 0.98691 1.20933 1.05662 1.01302 0.94930 1.21525 1.00260 0.90648 1.00518 1.20175 1.10136 0.96222 0.92181 1.17351 0.78052 0.82520 0.84121 1.90812 1.44554 1.83315 1.23319 1.43427 1.52919 1.11174 1.22722 1.17924 0.93269 0.85796 0.94591 1.19805 0.92873 1.00268 1.06103 1.18277 0.82715 0.83894 0.79831 1.90616 1.81933 1.22919 1.50453 1.45786 1.16034 1.21677 1.51892 1.21022 0.85331 0.96319 0.93124 0.91276 1.21797 0.95868 0.99505 0.98877 1.22174 0.97546 0.98679 0.99868 1.21908 0.86336 0.93919 0.93352 0.91084 1.86484 1.37796 1.72282 1.43161 1.21424 0.95475 0.99816 0.98224 1.21708 0.96208 0.96159 1.01023 1.21523 1.00213 0.92816 0.93203 1.21522 0.92518 1.01573 0.99828 1.21638 0.99237 0.92201 0.95841 1.21377 0.98198 0.97903 0.99733 1.41986 1.39695 1.11538 1.18080 0.74804 0.87878 1.22435 1.20412 0.80808 0.82456 0.74031 0.74507 0.93652 0.89950 0.90640 0.92548 0.75673 0.90136 0.92252 0.88790 0.89454 0.81733 0.81744 0.82939 0.85250 0.73888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.30 12.86 -148.98 -1.92 -3.21 16 2 C -0.08 0.06 3.07 71.23 0.22 0.28 16 3 Si 0.80 -2.44 30.54 68.60 2.10 -0.34 16 4 C 0.07 0.31 6.51 41.34 0.27 0.58 16 5 C -0.20 -0.90 9.32 22.01 0.21 -0.70 16 6 C -0.10 -0.85 10.65 22.58 0.24 -0.61 16 7 C -0.07 -0.74 7.05 40.34 0.28 -0.45 16 8 C 0.59 7.46 7.62 86.43 0.66 8.12 16 9 O -0.54 -9.40 14.32 -4.35 -0.06 -9.46 16 10 N -0.66 -6.20 4.53 -306.57 -1.39 -7.59 16 11 C 0.18 1.49 6.30 38.63 0.24 1.73 16 12 C -0.18 -0.66 5.89 -19.98 -0.12 -0.77 16 13 C 0.56 2.45 7.71 86.68 0.67 3.12 16 14 O -0.58 -6.06 13.65 -4.03 -0.06 -6.12 16 15 N -0.70 1.95 5.03 -445.73 -2.24 -0.29 16 16 C 0.15 -0.25 2.46 44.99 0.11 -0.14 16 17 H 0.07 0.24 7.58 -2.39 -0.02 0.22 16 18 C -0.12 0.07 5.49 30.60 0.17 0.24 16 19 C -0.14 0.13 5.55 30.60 0.17 0.30 16 20 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 21 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 22 O -0.59 -0.66 13.32 -148.98 -1.98 -2.65 16 23 C -0.11 0.28 5.57 30.59 0.17 0.45 16 24 C -0.11 0.72 5.39 30.60 0.16 0.88 16 25 C -0.06 0.20 9.52 22.52 0.21 0.41 16 26 C -0.14 0.51 10.02 22.24 0.22 0.74 16 27 C -0.07 -0.03 10.03 22.29 0.22 0.19 16 28 C -0.15 -1.09 8.68 22.37 0.19 -0.89 16 29 N -0.52 -3.20 5.99 -171.94 -1.03 -4.23 16 30 H 0.40 -2.51 8.74 -74.06 -0.65 -3.16 16 31 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 32 H -0.30 -1.48 7.11 99.48 0.71 -0.78 16 33 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 34 H 0.17 -0.19 6.17 -2.91 -0.02 -0.21 16 35 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.42 3.27 5.73 -92.71 -0.53 2.74 16 37 H 0.42 -3.87 6.66 -92.71 -0.62 -4.49 16 38 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 40 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.39 -2.48 9.08 -74.05 -0.67 -3.15 16 43 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 46 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 47 H 0.17 -1.87 6.44 -2.91 -0.02 -1.89 16 48 H 0.17 -1.66 8.06 -2.91 -0.02 -1.68 16 49 H 0.15 -0.61 8.06 -2.91 -0.02 -0.64 16 50 H 0.13 1.35 6.23 -2.91 -0.02 1.33 16 51 H 0.42 1.67 8.20 -92.71 -0.76 0.91 16 Total: 0.00 -28.20 414.99 -4.32 -32.52 By element: Atomic # 1 Polarization: -9.86 SS G_CDS: -2.15 Total: -12.01 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 4.42 Total: 13.37 kcal Atomic # 7 Polarization: -7.44 SS G_CDS: -4.66 Total: -12.11 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -4.02 Total: -21.43 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.10 Total: -0.34 kcal Total: -28.20 -4.32 -32.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_6580494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.836 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds