Wall clock time and date at job start Sat Mar 6 2021 16:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33826 * 122.44440 * 2 1 4 4 C 1.50693 * 124.52509 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.46929 * 329.97517 * 4 3 2 6 6 Si 1.86303 * 109.47424 * 209.97618 * 4 3 2 7 7 S 1.70619 * 110.95833 * 180.02562 * 3 2 1 8 8 C 1.75836 * 91.56432 * 359.97438 * 7 3 2 9 9 C 1.46518 * 125.46330 * 179.97438 * 8 7 3 10 10 O 1.21709 * 120.00562 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99996 * 0.02743 * 9 8 7 12 12 C 1.39167 * 120.00063 * 175.58266 * 11 9 8 13 13 C 1.40301 * 120.16509 * 215.52725 * 12 11 9 14 14 C 1.47494 * 120.20056 * 359.97438 * 13 12 11 15 15 O 1.21593 * 120.00503 * 5.44033 * 14 13 12 16 16 N 1.34775 * 119.99953 * 185.44466 * 14 13 12 17 17 C 1.46504 * 120.00324 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47144 * 34.99785 * 17 16 14 19 19 C 1.52998 * 109.47199 * 155.00085 * 17 16 14 20 20 C 1.53006 * 109.46996 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.46715 * 299.99419 * 20 19 17 22 22 H 1.08999 * 109.47284 * 300.00319 * 21 20 19 23 23 O 1.42903 * 109.46803 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.46734 * 60.00204 * 21 20 19 25 25 C 1.52996 * 109.47701 * 299.99569 * 24 21 20 26 26 C 1.39697 * 119.59568 * 179.97438 * 13 12 11 27 27 C 1.37788 * 119.92204 * 0.02562 * 26 13 12 28 28 C 1.38570 * 120.34005 * 359.97438 * 27 26 13 29 29 C 1.38010 * 120.41282 * 359.72964 * 28 27 26 30 30 C 1.36687 * 109.07682 * 359.97438 * 8 7 3 31 31 H 1.09005 * 109.47194 * 90.00229 * 1 2 3 32 32 H 1.08997 * 109.47386 * 209.99772 * 1 2 3 33 33 H 1.09008 * 109.47455 * 330.00280 * 1 2 3 34 34 H 1.09004 * 109.47625 * 89.97314 * 4 3 2 35 35 H 0.96702 * 113.99594 * 180.02562 * 5 4 3 36 36 H 1.48497 * 109.99791 * 298.68068 * 6 4 3 37 37 H 1.48502 * 110.00079 * 59.99473 * 6 4 3 38 38 H 0.96995 * 119.99683 * 355.57169 * 11 9 8 39 39 H 0.97005 * 120.00290 * 359.97438 * 16 14 13 40 40 H 1.09002 * 109.46724 * 299.99496 * 19 17 16 41 41 H 1.08999 * 109.47318 * 59.99807 * 19 17 16 42 42 H 1.08995 * 109.47011 * 59.99616 * 20 19 17 43 43 H 1.08991 * 109.46897 * 179.97438 * 20 19 17 44 44 H 0.96699 * 113.99631 * 180.02562 * 23 21 20 45 45 H 1.09007 * 109.47480 * 60.00048 * 24 21 20 46 46 H 1.09006 * 109.46772 * 179.97438 * 24 21 20 47 47 H 1.09007 * 109.47044 * 300.00746 * 25 24 21 48 48 H 1.08994 * 109.47746 * 180.02562 * 25 24 21 49 49 H 1.07992 * 120.03495 * 180.02562 * 26 13 12 50 50 H 1.08003 * 119.83050 * 179.97438 * 27 26 13 51 51 H 1.08004 * 119.79886 * 179.97438 * 28 27 26 52 52 H 1.07991 * 119.96873 * 180.29489 * 29 28 27 53 53 H 1.08008 * 123.35396 * 179.97438 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1294 0.0000 4 6 1.6354 2.5162 0.0006 5 8 0.3752 2.4983 -0.6732 6 14 2.7923 3.6832 -0.8772 7 16 3.8970 0.7896 -0.0007 8 6 3.5940 -0.9424 -0.0002 9 6 4.6231 -1.9854 -0.0010 10 8 4.3003 -3.1589 -0.0011 11 7 5.9272 -1.6453 -0.0017 12 6 6.9038 -2.6325 0.0904 13 6 8.0883 -2.3883 0.8015 14 6 8.3058 -1.0841 1.4551 15 8 7.4186 -0.2527 1.4634 16 7 9.4880 -0.8138 2.0432 17 6 9.7043 0.4818 2.6919 18 1 8.7748 0.8175 3.1518 19 6 10.7832 0.3399 3.7673 20 6 11.0086 1.6929 4.4453 21 6 11.4601 2.7170 3.4021 22 1 12.3896 2.3817 2.9422 23 8 11.6700 3.9809 4.0351 24 6 10.3811 2.8589 2.3266 25 6 10.1556 1.5060 1.6487 26 6 9.0604 -3.3879 0.8868 27 6 8.8515 -4.6040 0.2735 28 6 7.6805 -4.8420 -0.4281 29 6 6.7082 -3.8666 -0.5161 30 6 2.2445 -1.1599 0.0010 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8901 0.5138 34 1 1.4932 2.8502 1.0284 35 1 -0.0625 3.3597 -0.7113 36 1 4.0960 3.7350 -0.1680 37 1 2.9945 3.2389 -2.2797 38 1 6.1851 -0.7125 -0.0665 39 1 10.1958 -1.4772 2.0369 40 1 10.4614 -0.3895 4.5108 41 1 11.7127 0.0041 3.3075 42 1 10.0791 2.0282 4.9052 43 1 11.7769 1.5917 5.2117 44 1 11.9580 4.6798 3.4321 45 1 9.4514 3.1943 2.7865 46 1 10.7025 3.5889 1.5836 47 1 11.0853 1.1706 1.1888 48 1 9.3873 1.6071 0.8822 49 1 9.9746 -3.2077 1.4327 50 1 9.6042 -5.3756 0.3400 51 1 7.5260 -5.7983 -0.9058 52 1 5.7963 -4.0614 -1.0608 53 1 1.8018 -2.1451 0.0011 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_6739946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:16:42 Heat of formation + Delta-G solvation = -89.891488 kcal Electronic energy + Delta-G solvation = -37877.358677 eV Core-core repulsion = 32999.886651 eV Total energy + Delta-G solvation = -4877.472026 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.149 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.25348 -41.14202 -40.16501 -39.67210 -39.01399 -37.42566 -37.11999 -36.10166 -34.65014 -32.71663 -32.38154 -31.91781 -30.81906 -30.26505 -29.31968 -26.83322 -25.17267 -24.77431 -23.92165 -23.75325 -22.89263 -22.04692 -21.58239 -21.09763 -20.25016 -19.36358 -19.22763 -18.59957 -18.23523 -18.16221 -17.58666 -17.27428 -16.83876 -16.69695 -16.42803 -16.26556 -16.09195 -15.77235 -15.52348 -15.50458 -15.35365 -15.04420 -14.83119 -14.71628 -14.61713 -14.50778 -14.41162 -14.21415 -13.82942 -13.41279 -13.39436 -13.30013 -13.18911 -13.13040 -13.00904 -12.95093 -12.73027 -12.62069 -12.48763 -12.28984 -12.22398 -12.03792 -11.80664 -11.78559 -11.41764 -11.33103 -11.01119 -10.80272 -10.71727 -10.34200 -10.04001 -9.87850 -9.63180 -9.35105 -5.25682 -0.94227 -0.33725 0.07344 0.19193 0.47935 0.95919 1.22495 1.50482 1.62727 1.70478 1.83936 1.85391 1.92462 2.70846 3.21579 3.23454 3.38635 3.49783 3.57605 3.66297 3.66819 3.68069 3.95555 3.97954 3.99295 4.06240 4.17041 4.17307 4.22088 4.25181 4.28033 4.30511 4.35911 4.37173 4.39240 4.48306 4.60394 4.63915 4.75290 4.84111 4.87245 4.89297 4.90838 4.97001 4.98488 5.05341 5.08020 5.12405 5.19896 5.23845 5.25633 5.26607 5.38489 5.39663 5.41448 5.78601 5.99266 6.36437 6.63731 6.84550 6.85219 7.02314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.037 4.037 5 O -0.547 6.547 6 Si 0.756 3.244 7 S 0.194 5.806 8 C -0.289 4.289 9 C 0.591 3.409 10 O -0.540 6.540 11 N -0.654 5.654 12 C 0.177 3.823 13 C -0.183 4.183 14 C 0.561 3.439 15 O -0.575 6.575 16 N -0.702 5.702 17 C 0.144 3.856 18 H 0.066 0.934 19 C -0.114 4.114 20 C -0.112 4.112 21 C 0.104 3.896 22 H 0.072 0.928 23 O -0.589 6.589 24 C -0.145 4.145 25 C -0.121 4.121 26 C -0.057 4.057 27 C -0.133 4.133 28 C -0.070 4.070 29 C -0.153 4.153 30 C -0.042 4.042 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.407 0.593 36 H -0.268 1.268 37 H -0.290 1.290 38 H 0.419 0.581 39 H 0.417 0.583 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.394 0.606 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.050 0.950 49 H 0.168 0.832 50 H 0.168 0.832 51 H 0.154 0.846 52 H 0.127 0.873 53 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 3.615 -0.005 5.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.319 4.319 4 C -0.149 4.149 5 O -0.357 6.357 6 Si 0.660 3.340 7 S 0.462 5.538 8 C -0.408 4.408 9 C 0.380 3.620 10 O -0.419 6.419 11 N -0.301 5.301 12 C 0.080 3.920 13 C -0.188 4.188 14 C 0.350 3.650 15 O -0.456 6.456 16 N -0.353 5.353 17 C 0.040 3.960 18 H 0.084 0.916 19 C -0.151 4.151 20 C -0.150 4.150 21 C 0.045 3.955 22 H 0.090 0.910 23 O -0.398 6.398 24 C -0.183 4.183 25 C -0.160 4.160 26 C -0.076 4.076 27 C -0.152 4.152 28 C -0.089 4.089 29 C -0.173 4.173 30 C -0.076 4.076 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.259 0.741 36 H -0.195 1.195 37 H -0.217 1.217 38 H 0.261 0.739 39 H 0.255 0.745 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.244 0.756 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.069 0.931 49 H 0.185 0.815 50 H 0.185 0.815 51 H 0.171 0.829 52 H 0.145 0.855 53 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.938 3.510 0.082 6.898 hybrid contribution -1.135 -0.845 -0.460 1.488 sum 4.803 2.665 -0.379 5.506 Atomic orbital electron populations 1.20521 0.86798 1.03384 1.03052 1.18932 0.99767 0.89870 1.02660 1.23812 0.97829 1.00571 1.09716 1.24083 0.93564 0.94133 1.03094 1.86523 1.31940 1.38476 1.78794 0.94280 0.77603 0.85161 0.76984 1.83326 1.03284 0.98213 1.69011 1.24414 0.97863 0.97271 1.21279 1.17219 0.81867 0.87566 0.75328 1.90797 1.81970 1.18868 1.50280 1.43442 1.04395 1.11320 1.70963 1.17955 0.88367 0.90034 0.95604 1.19829 0.97594 0.96583 1.04824 1.18281 0.82505 0.86259 0.77933 1.90650 1.44014 1.49858 1.61098 1.45775 1.14909 1.18347 1.56290 1.21048 0.99323 0.82512 0.93120 0.91587 1.21705 0.98854 0.97317 0.97263 1.21424 1.02138 0.93464 0.97980 1.21900 0.97031 0.84091 0.92458 0.90998 1.86486 1.90888 1.21429 1.40965 1.22185 0.99957 0.97506 0.98670 1.21799 1.02005 0.94449 0.97739 1.21543 0.97664 0.91662 0.96689 1.21545 0.98115 0.97859 0.97646 1.21636 0.92292 0.98966 0.95984 1.21359 1.01366 0.93172 1.01390 1.20943 0.90543 1.00911 0.95221 0.90887 0.91536 0.89197 0.87130 0.74073 1.19471 1.21700 0.73899 0.74478 0.89817 0.88627 0.92420 0.90227 0.75631 0.92562 0.90279 0.89745 0.93079 0.81456 0.81496 0.82869 0.85507 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 8.70 71.24 0.62 0.37 16 2 C -0.10 -0.77 5.75 -21.05 -0.12 -0.89 16 3 C -0.20 -1.36 5.57 24.68 0.14 -1.22 16 4 C -0.04 0.03 2.75 71.23 0.20 0.22 16 5 O -0.55 1.65 9.81 -148.98 -1.46 0.19 16 6 Si 0.76 -0.96 31.31 68.60 2.15 1.18 16 7 S 0.19 1.82 19.80 -56.49 -1.12 0.70 16 8 C -0.29 -3.64 6.45 24.07 0.16 -3.49 16 9 C 0.59 9.05 7.62 86.40 0.66 9.71 16 10 O -0.54 -10.35 14.28 -4.38 -0.06 -10.42 16 11 N -0.65 -8.27 4.53 -306.64 -1.39 -9.66 16 12 C 0.18 1.79 6.30 38.63 0.24 2.04 16 13 C -0.18 -0.88 5.89 -19.98 -0.12 -0.99 16 14 C 0.56 3.14 7.71 86.68 0.67 3.81 16 15 O -0.57 -7.07 13.65 -4.01 -0.05 -7.12 16 16 N -0.70 1.46 5.03 -445.73 -2.24 -0.78 16 17 C 0.14 -0.17 2.45 44.99 0.11 -0.06 16 18 H 0.07 0.32 7.58 -2.39 -0.02 0.30 16 19 C -0.11 0.64 5.39 30.60 0.16 0.81 16 20 C -0.11 0.23 5.57 30.60 0.17 0.40 16 21 C 0.10 -0.24 3.47 30.60 0.11 -0.13 16 22 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 23 O -0.59 -0.49 13.32 -148.98 -1.98 -2.48 16 24 C -0.14 0.25 5.54 30.59 0.17 0.42 16 25 C -0.12 0.18 5.50 30.59 0.17 0.35 16 26 C -0.06 0.16 9.52 22.52 0.21 0.37 16 27 C -0.13 0.44 10.02 22.24 0.22 0.66 16 28 C -0.07 -0.09 10.03 22.30 0.22 0.13 16 29 C -0.15 -1.32 8.68 22.37 0.19 -1.13 16 30 C -0.04 -0.44 9.80 21.72 0.21 -0.23 16 31 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 33 H 0.09 0.12 6.41 -2.38 -0.02 0.10 16 34 H 0.11 -0.58 7.96 -2.39 -0.02 -0.60 16 35 H 0.41 -5.57 8.74 -74.06 -0.65 -6.22 16 36 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 37 H -0.29 -2.02 7.11 99.48 0.71 -1.31 16 38 H 0.42 5.05 5.71 -92.71 -0.53 4.52 16 39 H 0.42 -3.70 6.66 -92.70 -0.62 -4.31 16 40 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.39 -2.71 9.08 -74.06 -0.67 -3.38 16 45 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 47 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 48 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.17 -1.86 6.44 -2.91 -0.02 -1.88 16 50 H 0.17 -1.66 8.06 -2.91 -0.02 -1.68 16 51 H 0.15 -0.50 8.06 -2.91 -0.02 -0.53 16 52 H 0.13 1.55 6.23 -2.91 -0.02 1.53 16 53 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 Total: 0.00 -28.60 437.18 -3.19 -31.80 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: -1.43 Total: -14.56 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 4.40 Total: 11.15 kcal Atomic # 7 Polarization: -6.81 SS G_CDS: -3.63 Total: -10.44 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -3.56 Total: -19.83 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.15 Total: 1.18 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.12 Total: 0.70 kcal Total: -28.60 -3.19 -31.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_6739946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.096 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds