Wall clock time and date at job start Sat Mar 6 2021 16:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.46965 * 2 1 4 4 C 1.50701 * 109.46942 * 239.99830 * 2 1 3 5 5 C 1.32764 * 124.70829 * 299.72362 * 4 2 1 6 6 C 1.44432 * 113.08588 * 179.85701 * 5 4 2 7 7 C 1.47145 * 123.46564 * 180.19903 * 6 5 4 8 8 O 1.21633 * 120.00327 * 0.26899 * 7 6 5 9 9 N 1.34780 * 119.99837 * 180.27486 * 7 6 5 10 10 C 1.39199 * 119.99970 * 175.57728 * 9 7 6 11 11 C 1.40291 * 120.16658 * 215.53054 * 10 9 7 12 12 C 1.47508 * 120.19793 * 359.97438 * 11 10 9 13 13 O 1.21586 * 120.00151 * 5.44733 * 12 11 10 14 14 N 1.34778 * 119.99521 * 185.45246 * 12 11 10 15 15 C 1.46504 * 119.99727 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47262 * 324.99695 * 15 14 12 17 17 C 1.53002 * 109.47160 * 84.99875 * 15 14 12 18 18 C 1.53000 * 109.47148 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.46945 * 299.99604 * 18 17 15 20 20 H 1.09004 * 109.47467 * 300.00156 * 19 18 17 21 21 O 1.42901 * 109.47233 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46874 * 60.00229 * 19 18 17 23 23 C 1.52996 * 109.47011 * 204.99526 * 15 14 12 24 24 C 1.39688 * 119.59825 * 180.02562 * 11 10 9 25 25 C 1.37783 * 119.92341 * 0.02562 * 24 11 10 26 26 C 1.38576 * 120.34022 * 359.97438 * 25 24 11 27 27 C 1.38011 * 120.40134 * 359.72296 * 26 25 24 28 28 C 1.36037 * 113.06761 * 0.42521 * 6 5 4 29 29 S 1.70452 * 110.81433 * 359.77090 * 28 6 5 30 30 H 0.96698 * 114.00128 * 60.00149 * 1 2 3 31 31 H 1.08995 * 109.46723 * 119.99784 * 2 1 3 32 32 H 1.48497 * 109.99884 * 298.67668 * 3 2 1 33 33 H 1.48498 * 110.00270 * 59.99955 * 3 2 1 34 34 H 1.08000 * 123.45384 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99935 * 355.57413 * 9 7 6 36 36 H 0.96998 * 119.99973 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46670 * 299.99796 * 17 15 14 38 38 H 1.08995 * 109.47180 * 59.99770 * 17 15 14 39 39 H 1.08997 * 109.46997 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47340 * 59.99780 * 18 17 15 41 41 H 0.96697 * 113.99628 * 60.00036 * 21 19 18 42 42 H 1.09004 * 109.46670 * 179.97438 * 22 19 18 43 43 H 1.08999 * 109.47427 * 60.00397 * 22 19 18 44 44 H 1.09004 * 109.47467 * 300.00101 * 23 15 14 45 45 H 1.08997 * 109.47043 * 60.00256 * 23 15 14 46 46 H 1.07998 * 120.03846 * 180.02562 * 24 11 10 47 47 H 1.08007 * 119.83346 * 179.97438 * 25 24 11 48 48 H 1.07990 * 119.80045 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.96353 * 180.30069 * 27 26 25 50 50 H 1.08005 * 124.59572 * 179.77340 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6731 -1.9778 -1.5300 6 6 2.2779 -2.4010 -2.7714 7 6 2.1356 -3.7580 -3.3223 8 8 1.4766 -4.5897 -2.7278 9 7 2.7355 -4.0794 -4.4856 10 6 2.6781 -5.3866 -4.9604 11 6 3.7734 -5.9379 -5.6420 12 6 4.9919 -5.1356 -5.8599 13 8 5.0884 -4.0296 -5.3641 14 7 5.9981 -5.6285 -6.6089 15 6 7.2081 -4.8315 -6.8259 16 1 6.9412 -3.7769 -6.8936 17 6 8.1724 -5.0394 -5.6563 18 6 9.4357 -4.2066 -5.8826 19 6 10.1100 -4.6461 -7.1837 20 1 10.3773 -5.7007 -7.1163 21 8 11.2896 -3.8678 -7.3954 22 6 9.1457 -4.4381 -8.3533 23 6 7.8822 -5.2715 -8.1269 24 6 3.7027 -7.2507 -6.1139 25 6 2.5611 -7.9944 -5.9085 26 6 1.4809 -7.4470 -5.2349 27 6 1.5382 -6.1534 -4.7573 28 6 2.9968 -1.4173 -3.3766 29 16 2.9450 0.0205 -2.4625 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5138 0.8900 32 1 1.5879 2.4585 -1.2243 33 1 1.5615 2.4679 1.2084 34 1 1.0709 -2.6253 -0.9099 35 1 3.2073 -3.3997 -4.9919 36 1 5.9212 -6.5109 -7.0042 37 1 7.6921 -4.7259 -4.7294 38 1 8.4393 -6.0940 -5.5886 39 1 10.1224 -4.3544 -5.0492 40 1 9.1685 -3.1521 -5.9500 41 1 11.9471 -3.9507 -6.6912 42 1 9.6263 -4.7508 -9.2804 43 1 8.8785 -3.3835 -8.4208 44 1 8.1491 -6.3262 -8.0592 45 1 7.1953 -5.1234 -8.9601 46 1 4.5418 -7.6823 -6.6391 47 1 2.5079 -9.0092 -6.2743 48 1 0.5906 -8.0378 -5.0783 49 1 0.6940 -5.7355 -4.2291 50 1 3.5283 -1.5317 -4.3098 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11560734_6894386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:16:48 Heat of formation + Delta-G solvation = -89.497104 kcal Electronic energy + Delta-G solvation = -35381.321916 eV Core-core repulsion = 30659.404610 eV Total energy + Delta-G solvation = -4721.917305 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.133 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.18676 -41.07744 -39.95387 -39.18078 -38.77331 -37.26864 -37.07097 -36.00749 -34.58335 -32.32896 -32.23833 -31.87120 -30.53040 -29.25467 -27.04585 -26.16723 -25.06189 -23.87912 -23.86724 -22.90001 -22.02186 -21.65448 -21.05835 -20.51458 -19.45460 -18.87006 -18.32196 -18.20972 -18.17142 -17.52844 -17.47907 -16.76178 -16.48164 -16.31425 -16.22754 -15.97071 -15.76765 -15.52257 -15.48044 -15.40889 -15.06546 -14.76811 -14.60466 -14.44839 -14.18415 -14.09957 -13.90119 -13.65564 -13.57642 -13.35615 -13.25555 -13.15555 -12.93990 -12.77726 -12.59147 -12.45063 -12.44120 -12.18186 -11.89068 -11.75007 -11.65272 -11.29197 -11.17442 -10.91996 -10.80331 -10.75738 -10.28017 -10.08437 -9.97739 -9.61710 -9.25087 -5.06241 -0.53296 -0.24922 0.22257 0.31622 0.62998 0.77023 1.19546 1.54248 1.73029 1.85905 1.90178 1.98789 2.10769 2.78227 3.26191 3.27258 3.52104 3.54826 3.62895 3.69601 3.71393 3.74510 3.90453 4.02423 4.05558 4.10736 4.17282 4.21052 4.29373 4.31618 4.34286 4.38057 4.42742 4.43503 4.47834 4.63832 4.65354 4.80944 4.88005 4.91727 4.95343 5.01309 5.02825 5.09400 5.11715 5.12193 5.21522 5.24565 5.30165 5.33594 5.44010 5.45377 5.85402 6.20503 6.38633 6.42926 6.86449 6.87053 7.08658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.044 4.044 3 Si 0.728 3.272 4 C -0.243 4.243 5 C -0.070 4.070 6 C -0.184 4.184 7 C 0.575 3.425 8 O -0.555 6.555 9 N -0.649 5.649 10 C 0.183 3.817 11 C -0.183 4.183 12 C 0.565 3.435 13 O -0.572 6.572 14 N -0.704 5.704 15 C 0.146 3.854 16 H 0.073 0.927 17 C -0.122 4.122 18 C -0.144 4.144 19 C 0.103 3.897 20 H 0.069 0.931 21 O -0.589 6.589 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.058 4.058 25 C -0.137 4.137 26 C -0.073 4.073 27 C -0.155 4.155 28 C -0.192 4.192 29 S 0.262 5.738 30 H 0.389 0.611 31 H 0.132 0.868 32 H -0.251 1.251 33 H -0.272 1.272 34 H 0.140 0.860 35 H 0.424 0.576 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.394 0.606 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.166 0.834 47 H 0.164 0.836 48 H 0.149 0.851 49 H 0.125 0.875 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -2.182 -5.124 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.155 4.155 3 Si 0.628 3.372 4 C -0.360 4.360 5 C -0.099 4.099 6 C -0.202 4.202 7 C 0.364 3.636 8 O -0.435 6.435 9 N -0.297 5.297 10 C 0.086 3.914 11 C -0.189 4.189 12 C 0.354 3.646 13 O -0.453 6.453 14 N -0.355 5.355 15 C 0.042 3.958 16 H 0.091 0.909 17 C -0.161 4.161 18 C -0.182 4.182 19 C 0.044 3.956 20 H 0.087 0.913 21 O -0.398 6.398 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.077 4.077 25 C -0.156 4.156 26 C -0.092 4.092 27 C -0.175 4.175 28 C -0.330 4.330 29 S 0.529 5.471 30 H 0.238 0.762 31 H 0.150 0.850 32 H -0.176 1.176 33 H -0.197 1.197 34 H 0.158 0.842 35 H 0.267 0.733 36 H 0.254 0.746 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.243 0.757 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.183 0.817 47 H 0.181 0.819 48 H 0.167 0.833 49 H 0.143 0.857 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.332 0.232 -4.543 7.009 hybrid contribution -1.467 -1.838 0.128 2.355 sum 3.865 -1.606 -4.415 6.083 Atomic orbital electron populations 1.86609 1.18001 1.80391 1.50083 1.24732 0.83397 1.11311 0.96061 0.94416 0.90389 0.72226 0.80183 1.24885 1.08498 0.98627 1.04000 1.20924 0.99120 0.95107 0.94773 1.19990 1.07263 0.93915 0.98993 1.18067 0.78042 0.87520 0.79927 1.90766 1.40723 1.51278 1.60716 1.43417 1.53881 1.10025 1.22359 1.17919 0.93291 0.85062 0.95163 1.19821 0.93283 0.96852 1.08937 1.18199 0.83051 0.85430 0.77950 1.90610 1.81573 1.21985 1.51104 1.45803 1.16490 1.21570 1.51681 1.21036 0.83476 0.95961 0.95348 0.90925 1.21800 0.95131 1.01198 0.97935 1.22167 0.97281 1.00277 0.98475 1.21911 0.85000 0.94525 0.94151 0.91314 1.86483 1.30389 1.71339 1.51578 1.21431 0.94540 1.00834 0.98147 1.21713 0.96184 1.01316 0.95965 1.21524 0.99335 0.90768 0.96104 1.21502 0.92642 1.01833 0.99606 1.21609 0.99975 0.93666 0.93927 1.21347 0.97170 0.96381 1.02614 1.26143 1.02173 0.99004 1.05691 1.82869 1.44296 1.09175 1.10768 0.76174 0.84995 1.17621 1.19737 0.84232 0.73328 0.74634 0.93170 0.90185 0.90546 0.92217 0.75669 0.90397 0.92087 0.89000 0.89588 0.81662 0.81871 0.83293 0.85692 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.99 12.85 -148.98 -1.91 -3.90 16 2 C -0.04 -0.02 2.95 71.24 0.21 0.19 16 3 Si 0.73 -1.72 30.91 68.60 2.12 0.40 16 4 C -0.24 -0.51 5.68 24.51 0.14 -0.37 16 5 C -0.07 -0.50 9.91 22.67 0.22 -0.28 16 6 C -0.18 -1.41 5.98 -19.87 -0.12 -1.53 16 7 C 0.58 6.93 7.63 86.58 0.66 7.59 16 8 O -0.56 -9.97 14.23 -4.14 -0.06 -10.03 16 9 N -0.65 -5.60 4.50 -306.12 -1.38 -6.98 16 10 C 0.18 1.45 6.30 38.62 0.24 1.69 16 11 C -0.18 -0.53 5.89 -19.98 -0.12 -0.64 16 12 C 0.56 1.65 7.71 86.69 0.67 2.32 16 13 O -0.57 -4.73 13.65 -3.99 -0.05 -4.78 16 14 N -0.70 2.80 5.03 -445.73 -2.24 0.56 16 15 C 0.15 -0.47 2.45 44.99 0.11 -0.36 16 16 H 0.07 0.10 7.58 -2.39 -0.02 0.08 16 17 C -0.12 0.30 5.49 30.59 0.17 0.47 16 18 C -0.14 0.40 5.54 30.59 0.17 0.57 16 19 C 0.10 -0.32 3.47 30.59 0.11 -0.22 16 20 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 21 O -0.59 -0.05 13.32 -148.98 -1.98 -2.04 16 22 C -0.11 0.39 5.57 30.61 0.17 0.56 16 23 C -0.11 0.82 5.39 30.61 0.17 0.99 16 24 C -0.06 0.21 9.52 22.51 0.21 0.43 16 25 C -0.14 0.48 10.02 22.24 0.22 0.71 16 26 C -0.07 -0.08 10.03 22.30 0.22 0.14 16 27 C -0.15 -1.19 8.68 22.37 0.19 -1.00 16 28 C -0.19 -0.40 10.38 67.31 0.70 0.30 16 29 S 0.26 -0.42 20.18 -56.49 -1.14 -1.56 16 30 H 0.39 -0.94 8.70 -74.06 -0.64 -1.59 16 31 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 32 H -0.25 0.04 7.11 99.48 0.71 0.75 16 33 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.42 2.64 5.10 -92.71 -0.47 2.17 16 36 H 0.42 -4.20 6.66 -92.71 -0.62 -4.82 16 37 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 -0.40 8.14 -2.39 -0.02 -0.41 16 39 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.39 -2.91 9.08 -74.06 -0.67 -3.59 16 42 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.09 -0.97 8.14 -2.38 -0.02 -0.99 16 45 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 46 H 0.17 -1.94 6.44 -2.91 -0.02 -1.96 16 47 H 0.16 -1.59 8.06 -2.91 -0.02 -1.61 16 48 H 0.15 -0.45 8.06 -2.92 -0.02 -0.47 16 49 H 0.13 1.45 6.23 -2.91 -0.02 1.43 16 50 H 0.19 -0.19 7.02 -2.91 -0.02 -0.21 16 Total: 0.00 -25.22 419.71 -3.63 -28.85 By element: Atomic # 1 Polarization: -10.74 SS G_CDS: -1.33 Total: -12.07 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.35 Total: 11.55 kcal Atomic # 7 Polarization: -2.80 SS G_CDS: -3.62 Total: -6.42 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -4.01 Total: -20.76 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.12 Total: 0.40 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.14 Total: -1.56 kcal Total: -25.22 -3.63 -28.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11560734_6894386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.643 kcal (2) G-P(sol) polarization free energy of solvation -25.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds