Wall clock time and date at job start Sat Mar 6 2021 19:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47530 * 2 1 4 4 C 1.53002 * 109.47481 * 239.99692 * 2 1 3 5 5 O 1.42901 * 109.46954 * 119.99701 * 2 1 3 6 6 C 1.42905 * 113.99987 * 60.00023 * 5 2 1 7 7 H 1.09001 * 112.84436 * 341.19831 * 6 5 2 8 8 C 1.53777 * 113.69098 * 112.46428 * 6 5 2 9 9 C 1.53778 * 87.08411 * 139.99402 * 8 6 5 10 10 H 1.09001 * 113.69402 * 89.12066 * 9 8 6 11 11 N 1.46496 * 113.61839 * 220.02283 * 9 8 6 12 12 C 1.34777 * 119.99650 * 252.49741 * 11 9 8 13 13 O 1.21588 * 120.00141 * 359.97438 * 12 11 9 14 14 C 1.47556 * 119.99868 * 179.97438 * 12 11 9 15 15 C 1.39837 * 120.00343 * 179.97438 * 14 12 11 16 16 C 1.36555 * 119.99870 * 179.97438 * 15 14 12 17 17 C 1.39817 * 120.00510 * 359.97438 * 16 15 14 18 18 C 1.47566 * 120.00078 * 180.02562 * 17 16 15 19 19 C 1.34979 * 125.27284 * 179.71560 * 18 17 16 20 20 C 1.37803 * 114.69582 * 179.82975 * 19 18 17 21 21 C 1.33738 * 115.08441 * 0.46499 * 20 19 18 22 22 C 1.50695 * 125.12245 * 179.73097 * 21 20 19 23 23 O 1.42905 * 109.46906 * 299.99646 * 22 21 20 24 24 Si 1.86303 * 109.47390 * 179.97438 * 22 21 20 25 25 S 1.75866 * 109.75928 * 359.74728 * 21 20 19 26 26 C 1.39822 * 120.00307 * 0.29778 * 17 16 15 27 27 C 1.36569 * 119.99604 * 359.44557 * 26 17 16 28 28 C 1.53779 * 113.61462 * 210.00118 * 6 5 2 29 29 H 1.08995 * 109.46914 * 300.00476 * 1 2 3 30 30 H 1.09002 * 109.46838 * 60.00168 * 1 2 3 31 31 H 1.08996 * 109.47677 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47181 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46923 * 299.99780 * 3 2 1 34 34 H 1.09002 * 109.47064 * 59.99695 * 3 2 1 35 35 H 1.08998 * 109.46926 * 300.00302 * 4 2 1 36 36 H 1.09002 * 109.46970 * 60.00220 * 4 2 1 37 37 H 1.09000 * 109.47594 * 180.02562 * 4 2 1 38 38 H 1.08998 * 113.61634 * 25.44228 * 8 6 5 39 39 H 1.09003 * 113.61513 * 254.54225 * 8 6 5 40 40 H 0.96996 * 120.00497 * 72.48740 * 11 9 8 41 41 H 1.07996 * 119.99349 * 359.97438 * 15 14 12 42 42 H 1.08004 * 119.99944 * 180.02562 * 16 15 14 43 43 H 1.07993 * 122.65647 * 0.02562 * 19 18 17 44 44 H 1.08006 * 122.45513 * 180.18844 * 20 19 18 45 45 H 1.09000 * 109.47501 * 59.99456 * 22 21 20 46 46 H 0.96698 * 114.00291 * 299.99729 * 23 22 21 47 47 H 1.48498 * 110.00161 * 179.97438 * 24 22 21 48 48 H 1.48502 * 110.00117 * 301.32056 * 24 22 21 49 49 H 1.08004 * 120.00191 * 179.70775 * 26 17 16 50 50 H 1.08008 * 119.99819 * 180.27941 * 27 26 17 51 51 H 1.08994 * 113.61255 * 105.38621 * 28 6 5 52 52 H 1.08998 * 113.61280 * 334.47881 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2646 7 1 0.7235 -2.2582 0.6345 8 6 2.7318 -3.0494 1.1208 9 6 2.0540 -3.8565 2.2406 10 1 1.3210 -4.5775 1.8788 11 7 2.9974 -4.4367 3.1995 12 6 3.2306 -5.7641 3.1963 13 8 2.6576 -6.4801 2.3979 14 6 4.1813 -6.3485 4.1617 15 6 4.4229 -7.7258 4.1588 16 6 5.3031 -8.2664 5.0520 17 6 5.9632 -7.4429 5.9690 18 6 6.9148 -8.0271 6.9337 19 6 7.6119 -7.3336 7.8583 20 6 8.4381 -8.1004 8.6511 21 6 8.4306 -9.4096 8.3781 22 6 9.2492 -10.4501 9.0980 23 8 10.6381 -10.1454 8.9560 24 14 8.9029 -12.1282 8.3666 25 16 7.3220 -9.7341 7.0519 26 6 5.7174 -6.0664 5.9757 27 6 4.8411 -5.5249 5.0791 28 6 1.4331 -2.5310 2.7125 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2490 38 1 3.7063 -2.6486 1.3999 39 1 2.7435 -3.5619 0.1589 40 1 3.4544 -3.8655 3.8365 41 1 3.9133 -8.3619 3.4502 42 1 5.4900 -9.3302 5.0495 43 1 7.5266 -6.2629 7.9702 44 1 9.0501 -7.6747 9.4325 45 1 8.9842 -10.4532 10.1553 46 1 10.9447 -10.1255 8.0391 47 1 9.7047 -13.1630 9.0676 48 1 7.4561 -12.4429 8.4798 49 1 6.2238 -5.4309 6.6872 50 1 4.6547 -4.4611 5.0813 51 1 0.3963 -2.6251 3.0355 52 1 2.0525 -1.9885 3.4267 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11572880_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:53:07 Heat of formation + Delta-G solvation = -24.138281 kcal Electronic energy + Delta-G solvation = -31811.710331 eV Core-core repulsion = 27449.423822 eV Total energy + Delta-G solvation = -4362.286510 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.154 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.63665 -40.73119 -39.82671 -39.03525 -38.19606 -37.35681 -34.92377 -33.75810 -33.11742 -32.18273 -30.45805 -28.44860 -28.35093 -27.40850 -26.67549 -25.56879 -24.40326 -23.86892 -23.28941 -21.75683 -21.25410 -20.71489 -20.24994 -19.13969 -18.57132 -18.04697 -17.59115 -17.17843 -16.71925 -16.48286 -16.22177 -16.21389 -16.10186 -15.94987 -15.69339 -15.49562 -15.16088 -14.91674 -14.53841 -14.53576 -14.36243 -14.33512 -14.06606 -13.89796 -13.61217 -13.51185 -13.34001 -13.29630 -13.10188 -13.10012 -12.85810 -12.67707 -12.63756 -12.59090 -12.31716 -12.29686 -12.12369 -12.05117 -11.76528 -11.57676 -11.33064 -11.08824 -10.81793 -10.53986 -10.41488 -10.19580 -10.12147 -9.55294 -9.03693 -5.16258 -0.89759 0.24546 0.33360 0.38086 0.76029 1.21731 1.51628 1.58383 1.84599 1.94540 1.99404 2.78774 2.81626 3.38139 3.42709 3.45910 3.53824 3.67623 3.70664 3.75318 3.80350 3.84052 3.86047 3.91253 3.98177 4.10646 4.19485 4.28487 4.31720 4.36695 4.46451 4.55554 4.61625 4.62459 4.63812 4.69026 4.72725 4.79445 4.82441 4.90771 4.91430 4.92249 4.97790 5.00286 5.02224 5.04691 5.10742 5.17838 5.22259 5.28426 5.31737 5.33326 5.36077 5.46220 5.47873 5.72742 6.37610 6.43691 6.66078 7.09051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 C -0.139 4.139 4 C -0.175 4.175 5 O -0.374 6.374 6 C 0.064 3.936 7 H 0.100 0.900 8 C -0.163 4.163 9 C 0.121 3.879 10 H 0.104 0.896 11 N -0.699 5.699 12 C 0.558 3.442 13 O -0.580 6.580 14 C -0.151 4.151 15 C -0.063 4.063 16 C -0.128 4.128 17 C 0.007 3.993 18 C -0.160 4.160 19 C -0.116 4.116 20 C -0.110 4.110 21 C -0.221 4.221 22 C -0.025 4.025 23 O -0.547 6.547 24 Si 0.717 3.283 25 S 0.123 5.877 26 C -0.109 4.109 27 C -0.068 4.068 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.415 0.585 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.396 0.604 47 H -0.268 1.268 48 H -0.268 1.268 49 H 0.160 0.840 50 H 0.161 0.839 51 H 0.089 0.911 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 4.656 -0.134 4.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.061 3.939 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.293 6.293 6 C 0.006 3.994 7 H 0.118 0.882 8 C -0.202 4.202 9 C 0.016 3.984 10 H 0.122 0.878 11 N -0.351 5.351 12 C 0.347 3.653 13 O -0.461 6.461 14 C -0.155 4.155 15 C -0.082 4.082 16 C -0.147 4.147 17 C 0.005 3.995 18 C -0.277 4.277 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.339 4.339 22 C -0.138 4.138 23 O -0.355 6.355 24 Si 0.620 3.380 25 S 0.390 5.610 26 C -0.129 4.129 27 C -0.087 4.087 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.184 0.816 44 H 0.171 0.829 45 H 0.140 0.860 46 H 0.247 0.753 47 H -0.194 1.194 48 H -0.194 1.194 49 H 0.178 0.822 50 H 0.178 0.822 51 H 0.107 0.893 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.087 2.131 -0.540 2.200 hybrid contribution 0.289 1.398 1.079 1.790 sum 0.376 3.529 0.539 3.590 Atomic orbital electron populations 1.22457 0.94974 1.02756 1.03329 1.21671 0.93676 0.93350 0.85247 1.21788 1.01673 0.93079 1.03056 1.22454 1.01838 1.00878 0.98053 1.88001 1.74157 1.23632 1.43538 1.23395 0.96892 0.81461 0.97649 0.88214 1.23992 1.00099 0.96926 0.99227 1.22203 0.92148 0.93806 0.90274 0.87755 1.45727 1.44867 1.07076 1.37386 1.18514 0.81251 0.82544 0.82968 1.90773 1.52150 1.61465 1.41736 1.20023 1.01067 0.94904 0.99477 1.20949 0.95768 0.94209 0.97278 1.21033 0.97471 1.00385 0.95801 1.18464 0.93859 0.94012 0.93193 1.23162 1.04735 0.96732 1.03027 1.20638 0.96566 1.02467 0.95012 1.20183 1.00181 0.92203 1.01452 1.25166 1.05813 0.99674 1.03212 1.24404 0.82700 1.04036 1.02678 1.86491 1.21065 1.93786 1.34131 0.94179 0.79491 0.74833 0.89491 1.84181 1.39511 1.06018 1.31269 1.21192 0.98546 0.93386 0.99730 1.21255 0.94021 1.00759 0.92629 1.23569 1.02858 0.93602 0.97035 0.91929 0.90531 0.91925 0.92302 0.89881 0.92078 0.92314 0.90645 0.92378 0.88945 0.91407 0.74595 0.85222 0.84729 0.81649 0.82862 0.86009 0.75327 1.19373 1.19377 0.82234 0.82178 0.89272 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.43 8.38 71.98 0.60 1.03 16 2 C 0.10 -0.06 1.11 -10.79 -0.01 -0.07 16 3 C -0.14 0.21 8.84 71.98 0.64 0.85 16 4 C -0.17 0.25 8.38 71.98 0.60 0.85 16 5 O -0.37 -0.69 10.00 -148.98 -1.49 -2.18 16 6 C 0.06 -0.07 2.82 31.12 0.09 0.02 16 7 H 0.10 -0.23 5.54 -2.39 -0.01 -0.24 16 8 C -0.16 0.00 7.71 31.12 0.24 0.24 16 9 C 0.12 0.00 4.24 45.52 0.19 0.20 16 10 H 0.10 0.37 7.46 -2.39 -0.02 0.35 16 11 N -0.70 0.36 5.30 -443.18 -2.35 -1.99 16 12 C 0.56 3.33 7.76 86.70 0.67 4.00 16 13 O -0.58 -8.37 15.93 -3.99 -0.06 -8.44 16 14 C -0.15 -0.41 5.88 -20.05 -0.12 -0.53 16 15 C -0.06 -0.27 9.53 22.26 0.21 -0.06 16 16 C -0.13 -0.26 9.54 22.26 0.21 -0.05 16 17 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 18 C -0.16 -0.02 6.37 23.98 0.15 0.13 16 19 C -0.12 0.24 9.64 21.42 0.21 0.45 16 20 C -0.11 0.13 10.00 21.14 0.21 0.34 16 21 C -0.22 0.14 5.73 24.66 0.14 0.28 16 22 C -0.02 0.03 2.96 71.23 0.21 0.24 16 23 O -0.55 0.58 12.86 -148.98 -1.92 -1.33 16 24 Si 0.72 -0.96 30.96 68.60 2.12 1.17 16 25 S 0.12 -0.01 19.46 -56.49 -1.10 -1.11 16 26 C -0.11 0.36 9.48 22.26 0.21 0.57 16 27 C -0.07 0.23 9.48 22.26 0.21 0.44 16 28 C -0.13 0.42 7.66 31.12 0.24 0.65 16 29 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.06 -0.18 6.24 -2.39 -0.01 -0.20 16 32 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.06 -0.08 7.02 -2.39 -0.02 -0.09 16 36 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.42 -2.76 6.74 -92.71 -0.62 -3.38 16 41 H 0.13 0.74 7.64 -2.91 -0.02 0.72 16 42 H 0.13 0.02 7.26 -2.91 -0.02 0.00 16 43 H 0.17 -1.15 6.88 -2.91 -0.02 -1.17 16 44 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 45 H 0.12 -0.13 7.96 -2.39 -0.02 -0.15 16 46 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 47 H -0.27 -1.21 7.11 99.48 0.71 -0.51 16 48 H -0.27 -0.96 7.11 99.48 0.71 -0.25 16 49 H 0.16 -1.40 6.74 -2.91 -0.02 -1.42 16 50 H 0.16 -1.64 6.38 -2.91 -0.02 -1.66 16 51 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 52 H 0.10 -0.47 8.12 -2.39 -0.02 -0.48 16 Total: 0.00 -18.68 432.29 -0.27 -18.95 By element: Atomic # 1 Polarization: -14.26 SS G_CDS: -0.28 Total: -14.53 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.80 Total: 9.47 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.35 Total: -1.99 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -3.47 Total: -11.95 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.12 Total: 1.17 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.10 Total: -1.11 kcal Total: -18.68 -0.27 -18.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11572880_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.189 kcal (2) G-P(sol) polarization free energy of solvation -18.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds