Wall clock time and date at job start Sat Mar 6 2021 19:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47050 * 239.99572 * 2 1 3 5 5 O 1.42902 * 109.46731 * 120.00152 * 2 1 3 6 6 C 1.42898 * 114.00420 * 59.99807 * 5 2 1 7 7 H 1.09001 * 112.84834 * 341.19364 * 6 5 2 8 8 C 1.53955 * 113.66662 * 112.43945 * 6 5 2 9 9 C 1.53783 * 87.01951 * 139.93279 * 8 6 5 10 10 H 1.09000 * 113.61036 * 89.22904 * 9 8 6 11 11 N 1.46497 * 113.61304 * 220.04653 * 9 8 6 12 12 C 1.34783 * 119.99981 * 254.13502 * 11 9 8 13 13 O 1.21275 * 119.99729 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99736 * 179.97438 * 12 11 9 15 15 N 1.46500 * 109.47049 * 180.02562 * 14 12 11 16 16 C 1.36841 * 125.06259 * 264.98143 * 15 14 12 17 17 C 1.34230 * 109.93490 * 180.02562 * 16 15 14 18 18 C 1.50707 * 126.49609 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.46442 * 255.02065 * 18 17 16 20 20 Si 1.86293 * 109.47256 * 15.01631 * 18 17 16 21 21 C 1.46489 * 107.00352 * 0.23828 * 17 16 15 22 22 C 1.39596 * 134.03782 * 179.76762 * 21 17 16 23 23 C 1.36654 * 119.76322 * 179.97438 * 22 21 17 24 24 C 1.38794 * 120.53173 * 359.97438 * 23 22 21 25 25 C 1.37795 * 120.66229 * 359.63942 * 24 23 22 26 26 C 1.37688 * 125.06312 * 85.01552 * 15 14 12 27 27 C 1.53779 * 113.61651 * 210.00087 * 6 5 2 28 28 H 1.09003 * 109.47249 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.47185 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47146 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47165 * 299.99540 * 3 2 1 33 33 H 1.08995 * 109.47419 * 60.00382 * 3 2 1 34 34 H 1.09000 * 109.47471 * 300.00344 * 4 2 1 35 35 H 1.09000 * 109.46980 * 60.00054 * 4 2 1 36 36 H 1.08999 * 109.46857 * 180.02562 * 4 2 1 37 37 H 1.09001 * 113.61440 * 25.41438 * 8 6 5 38 38 H 1.09001 * 113.66674 * 254.46270 * 8 6 5 39 39 H 0.97001 * 120.00190 * 74.14059 * 11 9 8 40 40 H 1.09002 * 109.47012 * 60.00370 * 14 12 11 41 41 H 1.08998 * 109.47486 * 300.00361 * 14 12 11 42 42 H 1.07998 * 125.02797 * 0.05200 * 16 15 14 43 43 H 1.08999 * 109.47345 * 135.02135 * 18 17 16 44 44 H 0.96700 * 114.00311 * 60.00230 * 19 18 17 45 45 H 1.48506 * 109.99973 * 180.02562 * 20 18 17 46 46 H 1.48493 * 110.00375 * 301.32185 * 20 18 17 47 47 H 1.08000 * 120.11463 * 359.97119 * 22 21 17 48 48 H 1.08003 * 119.73491 * 179.97438 * 23 22 21 49 49 H 1.07991 * 119.66881 * 179.97438 * 24 23 22 50 50 H 1.07997 * 120.10972 * 179.88545 * 25 24 23 51 51 H 1.09001 * 113.61633 * 105.46763 * 27 6 5 52 52 H 1.08999 * 113.61176 * 334.56534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0062 -0.6737 1.1668 6 6 1.5845 -2.0355 1.2646 7 1 0.7234 -2.2582 0.6345 8 6 2.7334 -3.0501 1.1199 9 6 2.0560 -3.8557 2.2411 10 1 1.3243 -4.5778 1.8789 11 7 2.9999 -4.4345 3.2004 12 6 3.2581 -5.7572 3.1774 13 8 2.7095 -6.4680 2.3622 14 6 4.2295 -6.3524 4.1638 15 7 4.3364 -7.7953 3.9339 16 6 3.6218 -8.7527 4.6012 17 6 3.9582 -9.9717 4.1509 18 6 3.4001 -11.2884 4.6265 19 8 4.3662 -11.9458 5.4490 20 14 1.8485 -10.9856 5.6121 21 6 4.9751 -9.7799 3.1141 22 6 5.7016 -10.6462 2.2953 23 6 6.6028 -10.1392 1.4020 24 6 6.8017 -8.7692 1.3015 25 6 6.0896 -7.8958 2.0944 26 6 5.1712 -8.3901 3.0146 27 6 1.4330 -2.5311 2.7124 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.7079 -2.6489 1.3982 38 1 2.7449 -3.5640 0.1587 39 1 3.4389 -3.8659 3.8522 40 1 3.8742 -6.1711 5.1782 41 1 5.2083 -5.8907 4.0338 42 1 2.8947 -8.5565 5.3752 43 1 3.1675 -11.9164 3.7665 44 1 4.6209 -11.4433 6.2350 45 1 1.2887 -12.2764 6.0874 46 1 2.1460 -10.1046 6.7698 47 1 5.5519 -11.7133 2.3677 48 1 7.1650 -10.8099 0.7690 49 1 7.5177 -8.3837 0.5910 50 1 6.2528 -6.8315 2.0101 51 1 0.3962 -2.6265 3.0350 52 1 2.0514 -1.9877 3.4268 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11572880_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:55:24 Heat of formation + Delta-G solvation = -15.621555 kcal Electronic energy + Delta-G solvation = -32120.336158 eV Core-core repulsion = 27860.293085 eV Total energy + Delta-G solvation = -4260.043073 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.54681 -41.28878 -40.18266 -38.33988 -38.12946 -37.63085 -34.79306 -34.09053 -33.37013 -31.42302 -30.24840 -29.06014 -28.40817 -28.36500 -26.67707 -26.12762 -24.87550 -23.70734 -22.69954 -21.75221 -21.22282 -20.77190 -20.58949 -18.65202 -18.42253 -18.02277 -17.68300 -17.33050 -16.93681 -16.42792 -16.39061 -16.26183 -15.99702 -15.80703 -15.56002 -15.39577 -15.05502 -14.79980 -14.72779 -14.46064 -14.41198 -14.10590 -14.07326 -13.65064 -13.50029 -13.32454 -13.26068 -13.06055 -12.86900 -12.72772 -12.68894 -12.62528 -12.58037 -12.40019 -12.31791 -12.11808 -12.00090 -11.76751 -11.73809 -11.33851 -11.09317 -10.55759 -10.45110 -10.42008 -10.10063 -9.16838 -8.64114 -4.86227 0.13436 0.63234 1.35266 1.40682 1.45423 1.58533 1.67668 1.97377 2.17251 2.78157 2.94864 3.42782 3.52933 3.53647 3.62250 3.66925 3.74179 3.79986 3.84054 3.85936 3.89991 3.97136 4.02874 4.09346 4.13810 4.21172 4.28917 4.29997 4.49682 4.58482 4.60876 4.63249 4.68606 4.71220 4.72940 4.78058 4.78241 4.82109 4.88863 4.90580 4.91038 4.97501 5.01596 5.05504 5.13099 5.16939 5.31719 5.34957 5.47547 5.50179 5.65711 5.72994 5.74667 6.18452 6.22659 6.37241 6.48338 6.60356 7.13828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 C -0.139 4.139 4 C -0.175 4.175 5 O -0.375 6.375 6 C 0.062 3.938 7 H 0.097 0.903 8 C -0.164 4.164 9 C 0.126 3.874 10 H 0.101 0.899 11 N -0.700 5.700 12 C 0.494 3.506 13 O -0.567 6.567 14 C 0.087 3.913 15 N -0.466 5.466 16 C 0.075 3.925 17 C -0.215 4.215 18 C -0.051 4.051 19 O -0.553 6.553 20 Si 0.766 3.234 21 C -0.115 4.115 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.107 4.107 25 C -0.134 4.134 26 C 0.091 3.909 27 C -0.130 4.130 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.420 0.580 40 H 0.162 0.838 41 H 0.141 0.859 42 H 0.198 0.802 43 H 0.104 0.896 44 H 0.384 0.616 45 H -0.302 1.302 46 H -0.259 1.259 47 H 0.119 0.881 48 H 0.136 0.864 49 H 0.145 0.855 50 H 0.131 0.869 51 H 0.089 0.911 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 8.280 1.921 8.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.061 3.939 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.294 6.294 6 C 0.003 3.997 7 H 0.115 0.885 8 C -0.203 4.203 9 C 0.021 3.979 10 H 0.119 0.881 11 N -0.353 5.353 12 C 0.279 3.721 13 O -0.445 6.445 14 C -0.037 4.037 15 N -0.148 5.148 16 C -0.051 4.051 17 C -0.222 4.222 18 C -0.159 4.159 19 O -0.361 6.361 20 Si 0.669 3.331 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.173 4.173 24 C -0.127 4.127 25 C -0.155 4.155 26 C -0.014 4.014 27 C -0.168 4.168 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.258 0.742 40 H 0.180 0.820 41 H 0.159 0.841 42 H 0.214 0.786 43 H 0.121 0.879 44 H 0.233 0.767 45 H -0.230 1.230 46 H -0.185 1.185 47 H 0.137 0.863 48 H 0.154 0.846 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.107 0.893 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.320 7.682 1.863 8.239 hybrid contribution 1.160 -0.177 0.282 1.207 sum -1.160 7.506 2.146 7.892 Atomic orbital electron populations 1.22457 0.94953 1.02746 1.03348 1.21659 0.93684 0.93332 0.85223 1.21787 1.01660 0.93095 1.03070 1.22453 1.01810 1.00840 0.98111 1.87996 1.74185 1.23745 1.43505 1.23457 0.96863 0.81405 0.97936 0.88514 1.24016 1.00062 0.97025 0.99240 1.22087 0.92054 0.93611 0.90162 0.88131 1.45752 1.45301 1.07627 1.36626 1.21405 0.82832 0.82741 0.85100 1.90796 1.52250 1.61250 1.40157 1.21973 1.02138 0.78090 1.01542 1.43434 1.34087 1.05538 1.31759 1.22020 0.97498 0.86741 0.98845 1.20707 1.03786 0.95078 1.02666 1.24589 1.00411 0.91592 0.99329 1.86562 1.61386 1.48430 1.39714 0.94040 0.79055 0.79702 0.80342 1.19340 1.00260 0.92562 0.99791 1.20454 0.95798 0.99218 0.95141 1.20918 1.00082 0.96017 1.00236 1.21128 0.99425 0.93034 0.99064 1.20239 0.97764 1.00336 0.97139 1.18397 0.96203 0.92022 0.94810 1.23538 1.02867 0.93660 0.96741 0.91863 0.90574 0.91939 0.92323 0.89915 0.92033 0.92391 0.90679 0.92408 0.88979 0.91942 0.74208 0.82011 0.84144 0.78574 0.87851 0.76747 1.22972 1.18469 0.86281 0.84563 0.83753 0.85111 0.89280 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.54 8.38 71.98 0.60 1.15 16 2 C 0.10 -0.12 1.11 -10.80 -0.01 -0.14 16 3 C -0.14 0.29 8.84 71.98 0.64 0.92 16 4 C -0.17 0.32 8.38 71.98 0.60 0.93 16 5 O -0.37 -0.34 10.00 -148.98 -1.49 -1.83 16 6 C 0.06 -0.15 2.82 31.18 0.09 -0.07 16 7 H 0.10 -0.31 5.54 -2.39 -0.01 -0.32 16 8 C -0.16 0.30 7.73 31.18 0.24 0.54 16 9 C 0.13 -0.41 4.21 45.52 0.19 -0.22 16 10 H 0.10 0.09 7.50 -2.39 -0.02 0.07 16 11 N -0.70 4.43 5.36 -440.04 -2.36 2.07 16 12 C 0.49 -0.53 7.90 87.66 0.69 0.16 16 13 O -0.57 -5.66 16.04 -3.01 -0.05 -5.71 16 14 C 0.09 -0.58 6.48 85.63 0.55 -0.03 16 15 N -0.47 -0.93 2.27 -520.00 -1.18 -2.11 16 16 C 0.07 0.11 9.89 83.00 0.82 0.93 16 17 C -0.21 -1.27 5.57 -18.63 -0.10 -1.38 16 18 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 19 O -0.55 -3.77 12.88 -148.98 -1.92 -5.69 16 20 Si 0.77 -0.18 30.82 68.60 2.11 1.94 16 21 C -0.12 -1.17 6.35 -20.20 -0.13 -1.30 16 22 C -0.09 -0.86 10.05 22.23 0.22 -0.64 16 23 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 24 C -0.11 -0.58 10.01 22.30 0.22 -0.35 16 25 C -0.13 -0.78 10.00 22.37 0.22 -0.56 16 26 C 0.09 0.69 6.80 39.03 0.27 0.96 16 27 C -0.13 0.73 7.66 31.12 0.24 0.97 16 28 H 0.06 -0.15 8.14 -2.39 -0.02 -0.16 16 29 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.06 -0.22 6.24 -2.39 -0.01 -0.24 16 31 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.06 -0.09 7.02 -2.39 -0.02 -0.11 16 35 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.42 -5.44 8.71 -92.71 -0.81 -6.25 16 40 H 0.16 -2.38 8.12 -2.39 -0.02 -2.40 16 41 H 0.14 -1.57 8.14 -2.39 -0.02 -1.58 16 42 H 0.20 -1.06 6.27 -2.91 -0.02 -1.08 16 43 H 0.10 0.56 7.96 -2.39 -0.02 0.54 16 44 H 0.38 0.06 8.70 -74.06 -0.64 -0.59 16 45 H -0.30 -2.24 7.11 99.48 0.71 -1.54 16 46 H -0.26 0.09 7.00 99.48 0.70 0.78 16 47 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 48 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 49 H 0.14 0.04 8.06 -2.92 -0.02 0.02 16 50 H 0.13 0.17 8.06 -2.91 -0.02 0.14 16 51 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 52 H 0.10 -0.73 8.11 -2.39 -0.02 -0.75 16 Total: 0.00 -24.81 422.68 0.42 -24.39 By element: Atomic # 1 Polarization: -13.62 SS G_CDS: -0.50 Total: -14.12 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.80 Total: 1.04 kcal Atomic # 7 Polarization: 3.51 SS G_CDS: -3.54 Total: -0.03 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -3.46 Total: -13.22 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.11 Total: 1.94 kcal Total: -24.81 0.42 -24.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11572880_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.770 kcal (2) G-P(sol) polarization free energy of solvation -24.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds