Wall clock time and date at job start Sat Mar 6 2021 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 117.00144 * 2 1 4 4 C 1.38522 * 120.06809 * 0.02562 * 3 2 1 5 5 C 1.38292 * 119.99253 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.92466 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47079 * 255.00038 * 6 5 4 8 8 Si 1.86301 * 109.47149 * 14.99533 * 6 5 4 9 9 H 1.48506 * 109.47302 * 59.99966 * 8 6 5 10 10 H 1.48503 * 109.47334 * 300.00099 * 8 6 5 11 11 H 1.48500 * 109.47376 * 180.02562 * 8 6 5 12 12 C 1.38205 * 120.14718 * 0.26617 * 5 4 3 13 13 N 1.48013 * 119.92321 * 179.70850 * 12 5 4 14 14 O 1.21800 * 119.99607 * 180.02562 * 13 12 5 15 15 O 1.21799 * 119.99792 * 0.02562 * 13 12 5 16 16 C 1.38278 * 120.14815 * 359.45385 * 12 5 4 17 17 C 1.38529 * 120.00011 * 0.55053 * 16 12 5 18 18 O 1.35989 * 120.07565 * 179.74671 * 17 16 12 19 19 C 1.42903 * 116.99832 * 359.97438 * 18 17 16 20 20 C 1.50706 * 109.46793 * 179.97438 * 19 18 17 21 21 O 1.21271 * 120.00095 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99614 * 180.02562 * 20 19 18 23 23 C 1.46504 * 120.00050 * 359.97438 * 22 20 19 24 24 C 1.46494 * 119.99930 * 180.02562 * 22 20 19 25 25 Si 1.86302 * 109.47709 * 89.99750 * 24 22 20 26 26 C 1.86304 * 109.46931 * 59.99877 * 25 24 22 27 27 C 1.86290 * 109.47471 * 180.02562 * 25 24 22 28 28 C 1.86301 * 109.46904 * 300.00071 * 25 24 22 29 29 H 1.08997 * 109.47094 * 299.99861 * 1 2 3 30 30 H 1.09004 * 109.46829 * 59.99976 * 1 2 3 31 31 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 32 32 H 1.07992 * 120.00675 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47380 * 134.99435 * 6 5 4 34 34 H 0.96698 * 114.00299 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.00382 * 180.27099 * 16 12 5 36 36 H 1.08996 * 109.47399 * 299.99766 * 19 18 17 37 37 H 1.09003 * 109.47212 * 60.00069 * 19 18 17 38 38 H 1.08998 * 109.46769 * 90.00284 * 23 22 20 39 39 H 1.08998 * 109.46686 * 210.00010 * 23 22 20 40 40 H 1.08993 * 109.47213 * 329.99998 * 23 22 20 41 41 H 1.09004 * 109.47603 * 210.00208 * 24 22 20 42 42 H 1.09005 * 109.47368 * 329.99495 * 24 22 20 43 43 H 1.08993 * 109.46895 * 60.00441 * 26 25 24 44 44 H 1.08994 * 109.46803 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.46827 * 300.00656 * 26 25 24 46 46 H 1.09005 * 109.47645 * 59.99721 * 27 25 24 47 47 H 1.08998 * 109.47466 * 180.02562 * 27 25 24 48 48 H 1.09000 * 109.47438 * 299.99795 * 27 25 24 49 49 H 1.09006 * 109.47157 * 59.99748 * 28 25 24 50 50 H 1.09002 * 109.47457 * 179.97438 * 28 25 24 51 51 H 1.08996 * 109.47319 * 300.00074 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3744 0.0005 5 6 1.9229 3.6057 0.0011 6 6 1.1021 4.8696 0.0011 7 8 1.1356 5.4593 -1.3001 8 14 -0.6592 4.4663 0.4548 9 1 -0.6942 3.8534 1.8070 10 1 -1.2195 3.5123 -0.5357 11 1 -1.4682 5.7117 0.4542 12 6 3.3029 3.6797 -0.0045 13 7 3.9715 5.0003 -0.0104 14 8 5.1876 5.0671 -0.0158 15 8 3.3055 6.0200 -0.0099 16 6 4.0605 2.5230 0.0008 17 6 3.4363 1.2862 0.0002 18 8 4.1799 0.1476 0.0001 19 6 5.6007 0.3006 0.0003 20 6 6.2522 -1.0583 0.0009 21 8 5.5673 -2.0591 0.0007 22 7 7.5961 -1.1613 0.0016 23 6 8.4234 0.0478 0.0012 24 6 8.2294 -2.4822 0.0016 25 14 8.4989 -3.0419 -1.7548 26 6 9.6025 -1.8241 -2.6322 27 6 9.3037 -4.7220 -1.7547 28 6 6.8593 -3.1395 -2.6339 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2149 2.3193 0.0005 33 1 1.5133 5.5699 0.7281 34 1 0.6276 6.2788 -1.3738 35 1 5.1388 2.5835 0.0009 36 1 5.9070 0.8504 -0.8896 37 1 5.9069 0.8504 0.8903 38 1 8.6281 0.3482 1.0288 39 1 9.3633 -0.1553 -0.5120 40 1 7.8944 0.8499 -0.5134 41 1 9.1888 -2.4253 0.5160 42 1 7.5838 -3.1948 0.5150 43 1 10.5618 -1.7671 -2.1179 44 1 9.7598 -2.1513 -3.6599 45 1 9.1312 -0.8412 -2.6322 46 1 8.6577 -5.4344 -1.2414 47 1 9.4618 -5.0493 -2.7823 48 1 10.2630 -4.6655 -1.2402 49 1 6.3880 -2.1566 -2.6340 50 1 7.0169 -3.4665 -3.6617 51 1 6.2136 -3.8519 -2.1206 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:50:05 Heat of formation + Delta-G solvation = -127.120000 kcal Electronic energy + Delta-G solvation = -35105.351296 eV Core-core repulsion = 30327.285127 eV Total energy + Delta-G solvation = -4778.066169 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.161 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.39837 -42.15123 -41.05968 -39.68994 -39.10434 -37.75534 -37.13625 -36.59493 -32.80321 -32.63195 -30.67348 -29.50587 -28.95308 -28.66597 -28.38855 -27.99725 -27.88478 -26.48749 -25.55181 -23.82648 -23.09482 -20.76950 -20.64254 -19.77045 -19.50591 -18.87649 -18.49000 -18.28176 -18.11443 -17.88397 -17.55345 -17.04447 -16.83985 -16.57751 -16.13748 -15.92813 -15.57349 -15.06343 -14.78734 -14.49385 -14.36585 -14.18606 -14.16673 -14.07737 -13.88000 -13.84486 -13.76796 -13.53983 -13.42265 -13.24355 -13.03860 -12.97338 -12.93584 -12.86235 -12.67941 -12.61514 -12.44478 -12.39389 -12.35536 -12.19055 -12.08327 -11.80593 -11.63794 -11.01895 -10.77008 -10.75897 -10.52038 -10.25210 -9.53533 -9.25186 -1.33372 -0.47580 0.17881 0.29924 1.00170 1.20128 1.35447 1.38633 1.44129 1.78798 1.80229 1.81887 1.86142 1.91213 1.97234 2.34724 2.65233 2.89766 3.09783 3.26421 3.35431 3.43237 3.72861 3.78517 3.87124 3.88995 3.98921 4.08201 4.17060 4.20814 4.29129 4.32057 4.40730 4.59146 4.63930 4.64583 4.69535 4.70280 4.73339 4.79607 4.81564 4.85458 4.87648 4.96161 5.01208 5.28153 5.36964 5.50558 5.55543 5.59351 5.65618 5.98526 6.22412 6.54733 6.75653 7.03882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.307 6.307 3 C 0.165 3.835 4 C -0.182 4.182 5 C -0.001 4.001 6 C -0.101 4.101 7 O -0.551 6.551 8 Si 0.967 3.033 9 H -0.247 1.247 10 H -0.245 1.245 11 H -0.242 1.242 12 C -0.041 4.041 13 N 0.037 4.963 14 O -0.192 6.192 15 O -0.145 6.145 16 C -0.109 4.109 17 C 0.101 3.899 18 O -0.291 6.291 19 C 0.025 3.975 20 C 0.500 3.500 21 O -0.559 6.559 22 N -0.588 5.588 23 C 0.049 3.951 24 C -0.192 4.192 25 Si 1.061 2.939 26 C -0.447 4.447 27 C -0.459 4.459 28 C -0.464 4.464 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.177 0.823 33 H 0.102 0.898 34 H 0.404 0.596 35 H 0.187 0.813 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.065 0.935 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 0.895 0.989 1.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.201 4.201 5 C -0.003 4.003 6 C -0.210 4.210 7 O -0.361 6.361 8 Si 0.787 3.213 9 H -0.171 1.171 10 H -0.169 1.169 11 H -0.165 1.165 12 C -0.125 4.125 13 N 0.552 4.448 14 O -0.399 6.399 15 O -0.365 6.365 16 C -0.129 4.129 17 C 0.053 3.947 18 O -0.203 6.203 19 C -0.052 4.052 20 C 0.287 3.713 21 O -0.437 6.437 22 N -0.321 5.321 23 C -0.093 4.093 24 C -0.359 4.359 25 Si 1.252 2.748 26 C -0.555 4.555 27 C -0.567 4.567 28 C -0.568 4.568 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.194 0.806 33 H 0.120 0.880 34 H 0.255 0.745 35 H 0.204 0.796 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.328 -1.390 1.125 1.818 hybrid contribution 0.092 0.978 -0.006 0.982 sum -0.236 -0.412 1.120 1.216 Atomic orbital electron populations 1.23715 0.75185 1.07011 1.03370 1.86316 1.24374 1.24672 1.86482 1.18653 0.89387 0.86129 0.94187 1.21155 1.01968 0.89011 1.07961 1.19192 0.90674 0.96004 0.94393 1.25170 1.10723 0.93862 0.91204 1.86396 1.77361 1.45098 1.27233 0.85485 0.73257 0.82116 0.80479 1.17050 1.16874 1.16510 1.20508 0.92436 0.82482 1.17120 1.43485 1.00845 1.03067 0.97354 1.94517 0.96224 1.93985 1.55223 1.94478 1.64610 1.24986 1.52388 1.20912 1.03078 0.88033 1.00867 1.17946 0.88561 0.85414 1.02744 1.86302 1.18598 1.26772 1.88658 1.23014 0.78612 0.96809 1.06785 1.20226 0.83028 0.90323 0.77735 1.90746 1.63320 1.39415 1.50233 1.47442 1.04202 1.08507 1.71988 1.22416 0.97070 0.85562 1.04225 1.26788 1.01504 0.86854 1.20763 0.78698 0.64684 0.66963 0.64423 1.26109 1.10295 1.11029 1.08101 1.26203 1.07977 1.17765 1.04740 1.26458 1.19275 1.02983 1.08036 0.90217 0.90554 0.85551 0.80622 0.88048 0.74484 0.79606 0.85733 0.85734 0.90561 0.87942 0.88998 0.86941 0.90962 0.89608 0.91230 0.90700 0.91859 0.91048 0.89961 0.93276 0.91600 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -1.41 10.28 -79.65 -0.82 -2.22 16 3 C 0.16 0.64 6.70 22.57 0.15 0.79 16 4 C -0.18 -0.14 7.65 22.35 0.17 0.03 16 5 C 0.00 0.00 5.29 -19.86 -0.11 -0.11 16 6 C -0.10 0.02 1.73 71.24 0.12 0.14 16 7 O -0.55 -0.51 11.75 -129.49 -1.52 -2.03 16 8 Si 0.97 -4.06 25.49 68.60 1.75 -2.31 16 9 H -0.25 0.94 7.11 99.48 0.71 1.64 16 10 H -0.24 1.08 6.73 99.48 0.67 1.75 16 11 H -0.24 1.01 7.11 99.48 0.71 1.72 16 12 C -0.04 -0.21 6.84 36.38 0.25 0.04 16 13 N 0.04 0.32 4.45 -46.46 -0.21 0.12 16 14 O -0.19 -1.86 18.44 18.89 0.35 -1.51 16 15 O -0.15 -1.37 14.61 25.14 0.37 -1.00 16 16 C -0.11 -0.19 8.54 22.35 0.19 0.00 16 17 C 0.10 0.42 6.70 22.57 0.15 0.57 16 18 O -0.29 -1.93 9.46 -67.01 -0.63 -2.57 16 19 C 0.03 -0.03 3.77 71.24 0.27 0.24 16 20 C 0.50 2.12 7.30 87.66 0.64 2.76 16 21 O -0.56 -7.95 15.53 16.04 0.25 -7.70 16 22 N -0.59 1.42 2.38 -649.31 -1.54 -0.12 16 23 C 0.05 -0.50 10.00 127.77 1.28 0.77 16 24 C -0.19 0.52 4.65 127.77 0.59 1.11 16 25 Si 1.06 -4.42 12.32 68.60 0.85 -3.58 16 26 C -0.45 2.88 7.96 113.37 0.90 3.78 16 27 C -0.46 1.33 8.65 113.37 0.98 2.31 16 28 C -0.46 -1.91 8.18 113.37 0.93 -0.99 16 29 H 0.08 -0.63 7.66 -2.39 -0.02 -0.64 16 30 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 31 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.18 -0.68 3.12 -2.91 -0.01 -0.69 16 33 H 0.10 -0.05 6.09 -2.39 -0.01 -0.07 16 34 H 0.40 -3.13 8.74 -74.06 -0.65 -3.78 16 35 H 0.19 -0.67 5.85 -2.91 -0.02 -0.69 16 36 H 0.13 -0.88 6.92 -2.39 -0.02 -0.90 16 37 H 0.13 -0.87 7.63 -2.39 -0.02 -0.89 16 38 H 0.08 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.10 -1.37 6.82 -2.39 -0.02 -1.38 16 40 H 0.09 -1.26 6.44 -2.39 -0.02 -1.27 16 41 H 0.11 -0.91 7.89 -2.38 -0.02 -0.93 16 42 H 0.07 0.18 7.24 -2.38 -0.02 0.16 16 43 H 0.08 -0.76 7.96 -2.39 -0.02 -0.78 16 44 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.07 -0.53 7.46 -2.39 -0.02 -0.55 16 46 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 47 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 48 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 49 H 0.05 0.32 7.78 -2.38 -0.02 0.30 16 50 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 51 H 0.05 0.42 7.96 -2.39 -0.02 0.40 16 Total: 0.00 -27.79 418.77 7.52 -20.27 By element: Atomic # 1 Polarization: -10.94 SS G_CDS: 1.05 Total: -9.89 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.64 Total: 12.55 kcal Atomic # 7 Polarization: 1.75 SS G_CDS: -1.75 Total: 0.00 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -2.01 Total: -17.04 kcal Atomic # 14 Polarization: -8.48 SS G_CDS: 2.59 Total: -5.89 kcal Total: -27.79 7.52 -20.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.850 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds