Wall clock time and date at job start Sat Mar 6 2021 14:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 Si 1.86307 * 109.47089 * 269.99427 * 3 2 1 5 5 C 1.86306 * 109.46697 * 60.00384 * 4 3 2 6 6 C 1.86297 * 109.47253 * 180.02562 * 4 3 2 7 7 C 1.86293 * 109.47221 * 300.00561 * 4 3 2 8 8 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 9 9 O 1.21283 * 119.99750 * 180.02562 * 8 2 1 10 10 C 1.50702 * 119.99928 * 0.28128 * 8 2 1 11 11 O 1.42899 * 109.46876 * 179.72354 * 10 8 2 12 12 C 1.35897 * 116.99793 * 179.97438 * 11 10 8 13 13 C 1.38712 * 120.05594 * 359.72146 * 12 11 10 14 14 C 1.38170 * 119.94613 * 179.72127 * 13 12 11 15 15 C 1.38247 * 120.05291 * 0.57637 * 14 13 12 16 16 C 1.38293 * 120.11265 * 359.67904 * 15 14 13 17 17 C 1.50698 * 119.97348 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47035 * 245.02192 * 17 16 15 19 19 Si 1.86293 * 109.47004 * 5.02375 * 17 16 15 20 20 H 1.48502 * 109.47224 * 59.99710 * 19 17 16 21 21 H 1.48505 * 109.47195 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47320 * 299.99626 * 19 17 16 23 23 C 1.38123 * 120.05275 * 0.04378 * 16 15 14 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08994 * 109.47514 * 59.99942 * 5 4 3 30 30 H 1.09001 * 109.46663 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47099 * 299.99651 * 5 4 3 32 32 H 1.08996 * 109.46991 * 60.00130 * 6 4 3 33 33 H 1.09002 * 109.47110 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47285 * 300.00448 * 6 4 3 35 35 H 1.09002 * 109.47647 * 59.99045 * 7 4 3 36 36 H 1.09001 * 109.47589 * 179.97438 * 7 4 3 37 37 H 1.09005 * 109.47034 * 299.99569 * 7 4 3 38 38 H 1.09004 * 109.46965 * 299.72211 * 10 8 2 39 39 H 1.08994 * 109.46990 * 59.72065 * 10 8 2 40 40 H 1.08001 * 120.02969 * 0.02562 * 13 12 11 41 41 H 1.07998 * 119.97642 * 180.27891 * 14 13 12 42 42 H 1.08001 * 119.94442 * 179.69669 * 15 14 13 43 43 H 1.09001 * 109.46804 * 125.02259 * 17 16 15 44 44 H 0.96701 * 113.99801 * 60.00721 * 18 17 16 45 45 H 1.08003 * 120.02893 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 14 2.5081 1.8065 -1.7565 5 6 0.8802 2.0292 -2.6348 6 6 3.4401 3.4196 -1.7566 7 6 3.5149 0.5082 -2.6346 8 6 2.1390 -1.1672 0.0005 9 8 3.3518 -1.1671 0.0010 10 6 1.3855 -2.4723 -0.0053 11 8 2.3142 -3.5584 -0.0100 12 6 1.7949 -4.8142 -0.0151 13 6 0.4199 -4.9973 -0.0096 14 6 -0.1057 -6.2751 -0.0206 15 6 0.7375 -7.3706 -0.0250 16 6 2.1087 -7.1907 -0.0251 17 6 3.0250 -8.3871 -0.0304 18 8 3.7670 -8.4242 1.1903 19 14 2.0134 -9.9433 -0.1898 20 1 1.2423 -9.9047 -1.4584 21 1 2.9164 -11.1223 -0.1957 22 1 1.0753 -10.0436 0.9569 23 6 2.6391 -5.9154 -0.0199 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 0.2910 2.7888 -2.1210 30 1 1.0619 2.3434 -3.6626 31 1 0.3352 1.0851 -2.6348 32 1 4.3925 3.2889 -1.2428 33 1 3.6214 3.7344 -2.7843 34 1 2.8513 4.1795 -1.2426 35 1 2.9700 -0.4359 -2.6345 36 1 3.6963 0.8225 -3.6625 37 1 4.4674 0.3779 -2.1208 38 1 0.7588 -2.5340 0.8844 39 1 0.7590 -2.5261 -0.8955 40 1 -0.2393 -4.1419 -0.0018 41 1 -1.1762 -6.4183 -0.0209 42 1 0.3248 -8.3686 -0.0286 43 1 3.7136 -8.3135 -0.8721 44 1 3.2171 -8.4896 1.9830 45 1 3.7100 -5.7753 -0.0204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:54:26 Heat of formation + Delta-G solvation = -106.129603 kcal Electronic energy + Delta-G solvation = -23781.020780 eV Core-core repulsion = 20309.101070 eV Total energy + Delta-G solvation = -3471.919710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60069 -40.63026 -38.99577 -37.25523 -36.57429 -32.49939 -31.83887 -30.19876 -29.45269 -28.65449 -28.39289 -27.92491 -26.93482 -26.00749 -23.72165 -22.41816 -20.40128 -19.38867 -18.34290 -17.72071 -17.65115 -17.35603 -17.09381 -16.47046 -16.26335 -16.03753 -15.52288 -14.96547 -14.75698 -14.40862 -14.36185 -14.18912 -14.10435 -13.96377 -13.84654 -13.77372 -13.47088 -13.44781 -13.24112 -13.04091 -13.01608 -12.95487 -12.86984 -12.59290 -12.20266 -12.08324 -11.96404 -11.63134 -11.54634 -10.98024 -10.76861 -10.74810 -10.47138 -9.95046 -9.31605 -9.23890 0.18397 0.35781 1.14629 1.35448 1.44971 1.47767 1.54597 1.79512 1.91255 1.95153 2.01821 2.53627 2.64468 2.65617 3.36832 3.52838 3.68273 3.78902 3.93381 4.00831 4.06602 4.19849 4.30550 4.34120 4.42144 4.53965 4.64260 4.66440 4.68479 4.72370 4.79053 4.81170 4.85876 4.88134 4.95580 4.96930 5.00895 5.21567 5.33004 5.40605 5.42259 5.50522 5.58471 5.65586 5.67302 6.18813 6.35616 6.67848 7.07735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.589 5.589 3 C -0.193 4.193 4 Si 1.061 2.939 5 C -0.443 4.443 6 C -0.460 4.460 7 C -0.465 4.465 8 C 0.496 3.504 9 O -0.566 6.566 10 C 0.038 3.962 11 O -0.322 6.322 12 C 0.114 3.886 13 C -0.203 4.203 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.083 4.083 17 C -0.092 4.092 18 O -0.555 6.555 19 Si 0.999 3.001 20 H -0.253 1.253 21 H -0.278 1.278 22 H -0.244 1.244 23 C -0.146 4.146 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.389 0.611 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 2.573 -0.254 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.323 5.323 3 C -0.360 4.360 4 Si 1.252 2.748 5 C -0.552 4.552 6 C -0.567 4.567 7 C -0.569 4.569 8 C 0.283 3.717 9 O -0.445 6.445 10 C -0.040 4.040 11 O -0.236 6.236 12 C 0.069 3.931 13 C -0.221 4.221 14 C -0.088 4.088 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.201 4.201 18 O -0.362 6.362 19 Si 0.821 3.179 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.167 1.167 23 C -0.165 4.165 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.238 0.762 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.632 1.921 -0.697 9.847 hybrid contribution 0.459 0.384 0.455 0.752 sum -9.173 2.305 -0.242 9.462 Atomic orbital electron populations 1.22402 0.76514 1.06032 1.04118 1.47462 1.08455 1.04283 1.72062 1.26790 1.00512 0.87917 1.20810 0.78705 0.67102 0.64589 0.64386 1.26068 1.15675 1.05430 1.08069 1.26210 1.08604 1.17165 1.04749 1.26484 1.09281 1.13037 1.08060 1.20489 0.87766 0.85992 0.77450 1.90736 1.15775 1.87506 1.50459 1.22794 0.91633 0.83260 1.06291 1.86131 1.36021 1.12518 1.88899 1.19243 0.93121 0.83663 0.97121 1.21608 0.92756 1.00233 1.07545 1.21294 1.01407 0.90904 0.95203 1.21247 0.92489 1.00420 1.04687 1.20216 0.94696 0.94351 0.99105 1.25274 1.00463 1.03693 0.90682 1.86501 1.37059 1.96805 1.15845 0.84996 0.77210 0.74156 0.81506 1.17672 1.20397 1.16736 1.20321 0.99753 0.90435 1.05975 0.90704 0.87996 0.88795 0.86955 0.91320 0.89507 0.91152 0.90561 0.92011 0.91001 0.89894 0.93308 0.91545 0.93478 0.86233 0.85964 0.82243 0.82171 0.84456 0.86496 0.76170 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.57 10.01 127.77 1.28 0.71 16 2 N -0.59 1.26 2.38 -649.29 -1.54 -0.28 16 3 C -0.19 0.42 4.65 127.77 0.59 1.01 16 4 Si 1.06 -4.15 12.33 68.60 0.85 -3.30 16 5 C -0.44 3.11 7.97 113.37 0.90 4.02 16 6 C -0.46 1.18 8.65 113.37 0.98 2.16 16 7 C -0.46 -2.27 8.18 113.37 0.93 -1.34 16 8 C 0.50 2.61 7.31 87.66 0.64 3.25 16 9 O -0.57 -9.12 15.53 16.00 0.25 -8.87 16 10 C 0.04 -0.01 3.77 71.24 0.27 0.25 16 11 O -0.32 -2.86 9.67 -73.35 -0.71 -3.57 16 12 C 0.11 0.65 6.69 22.51 0.15 0.80 16 13 C -0.20 0.26 9.04 22.37 0.20 0.46 16 14 C -0.07 0.18 10.04 22.26 0.22 0.41 16 15 C -0.17 0.03 8.67 22.29 0.19 0.22 16 16 C -0.08 -0.27 5.35 -19.88 -0.11 -0.38 16 17 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 18 O -0.55 -2.04 12.83 -148.98 -1.91 -3.95 16 19 Si 1.00 -1.07 25.14 68.60 1.72 0.65 16 20 H -0.25 0.18 7.11 99.48 0.71 0.88 16 21 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 22 H -0.24 0.59 7.04 99.48 0.70 1.29 16 23 C -0.15 -1.09 9.62 22.37 0.22 -0.88 16 24 H 0.07 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H 0.10 -1.46 6.82 -2.39 -0.02 -1.48 16 26 H 0.09 -1.43 6.43 -2.39 -0.02 -1.44 16 27 H 0.11 -0.87 7.89 -2.39 -0.02 -0.89 16 28 H 0.07 0.25 7.24 -2.38 -0.02 0.23 16 29 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.08 -0.61 7.46 -2.38 -0.02 -0.62 16 32 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 33 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 35 H 0.05 0.35 7.78 -2.39 -0.02 0.34 16 36 H 0.07 0.23 7.96 -2.39 -0.02 0.21 16 37 H 0.05 0.46 7.96 -2.38 -0.02 0.44 16 38 H 0.12 -0.78 7.62 -2.38 -0.02 -0.80 16 39 H 0.12 -0.87 6.93 -2.39 -0.02 -0.89 16 40 H 0.16 -1.33 6.30 -2.91 -0.02 -1.35 16 41 H 0.16 -1.42 8.06 -2.91 -0.02 -1.44 16 42 H 0.14 -0.50 4.86 -2.91 -0.01 -0.51 16 43 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 44 H 0.39 -1.32 8.70 -74.06 -0.64 -1.96 16 45 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 Total: 0.00 -24.66 367.86 6.41 -18.25 By element: Atomic # 1 Polarization: -10.75 SS G_CDS: 1.08 Total: -9.67 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.67 Total: 10.74 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -1.54 Total: -0.28 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.37 Total: -16.39 kcal Atomic # 14 Polarization: -5.22 SS G_CDS: 2.57 Total: -2.65 kcal Total: -24.66 6.41 -18.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.876 kcal (2) G-P(sol) polarization free energy of solvation -24.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds