Wall clock time and date at job start Sat Mar 6 2021 14:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.50701 * 109.46791 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00390 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99900 * 0.02562 * 18 16 15 20 20 C 1.46505 * 120.00037 * 179.97438 * 18 16 15 21 21 Si 1.86295 * 109.46751 * 90.00707 * 20 18 16 22 22 C 1.86298 * 109.47486 * 60.00065 * 21 20 18 23 23 C 1.86307 * 109.47073 * 180.02562 * 21 20 18 24 24 C 1.86302 * 109.47213 * 299.99706 * 21 20 18 25 25 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 26 26 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 27 27 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 29 29 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 31 31 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 32 32 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 33 33 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 34 34 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 35 35 H 1.09006 * 109.46886 * 90.00020 * 19 18 16 36 36 H 1.08999 * 109.47234 * 209.99345 * 19 18 16 37 37 H 1.08996 * 109.47286 * 330.00018 * 19 18 16 38 38 H 1.08996 * 109.46859 * 210.00259 * 20 18 16 39 39 H 1.08997 * 109.47021 * 330.00615 * 20 18 16 40 40 H 1.08996 * 109.47491 * 59.99611 * 22 21 20 41 41 H 1.09001 * 109.47726 * 180.02562 * 22 21 20 42 42 H 1.09009 * 109.47030 * 299.99729 * 22 21 20 43 43 H 1.08997 * 109.46932 * 59.99765 * 23 21 20 44 44 H 1.09001 * 109.46938 * 180.02562 * 23 21 20 45 45 H 1.08996 * 109.46625 * 299.99606 * 23 21 20 46 46 H 1.09009 * 109.47050 * 60.00425 * 24 21 20 47 47 H 1.09001 * 109.47108 * 179.97438 * 24 21 20 48 48 H 1.08997 * 109.47291 * 300.00541 * 24 21 20 49 49 H 1.07995 * 120.05190 * 179.97438 * 25 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6127 1.6397 -0.0006 17 8 8.0137 2.7844 0.0007 18 7 8.4914 0.6178 -0.0011 19 6 8.0070 -0.7648 -0.0021 20 6 9.9310 0.8897 -0.0017 21 14 10.5420 1.0045 1.7544 22 6 10.2145 -0.6056 2.6326 23 6 12.3726 1.3510 1.7537 24 6 9.6500 2.3839 2.6334 25 6 3.4305 1.2840 -0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2123 2.3184 0.0005 30 1 1.3281 4.5115 0.0113 31 1 4.7897 5.0225 0.7288 32 1 3.8355 5.3143 -1.9976 33 1 5.8700 0.7868 0.8888 34 1 5.8704 0.7888 -0.8911 35 1 7.8871 -1.1070 -1.0301 36 1 8.7268 -1.4023 0.5114 37 1 7.0469 -0.8138 0.5115 38 1 10.4529 0.0826 -0.5159 39 1 10.1226 1.8317 -0.5155 40 1 10.7363 -1.4126 2.1184 41 1 10.5715 -0.5382 3.6602 42 1 9.1433 -0.8078 2.6330 43 1 12.5638 2.2931 1.2401 44 1 12.7301 1.4177 2.7813 45 1 12.8947 0.5442 1.2394 46 1 8.5788 2.1816 2.6338 47 1 10.0071 2.4508 3.6610 48 1 9.8416 3.3259 2.1196 49 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_4974312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:54:49 Heat of formation + Delta-G solvation = -139.490986 kcal Electronic energy + Delta-G solvation = -28589.719954 eV Core-core repulsion = 24642.133775 eV Total energy + Delta-G solvation = -3947.586179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85825 -40.90487 -39.84260 -38.32783 -36.95374 -36.55019 -32.32881 -31.60200 -30.27280 -29.46307 -28.66641 -28.40791 -28.37119 -27.91616 -26.25289 -26.12251 -23.53293 -22.48922 -20.44264 -20.01143 -18.43660 -17.98140 -17.89471 -17.69045 -17.23106 -16.80455 -16.70381 -16.56297 -16.19602 -15.79923 -15.52733 -15.19624 -14.87402 -14.45880 -14.31496 -14.17805 -14.07751 -13.89689 -13.84484 -13.77488 -13.48907 -13.47308 -13.31873 -13.23274 -13.19734 -13.03269 -12.95703 -12.85100 -12.49868 -12.27136 -12.20337 -11.98905 -11.68238 -11.60462 -11.59037 -10.96782 -10.76034 -10.73688 -10.33574 -9.72520 -9.23291 -9.11921 0.16674 0.28010 1.16111 1.35964 1.40658 1.43472 1.51656 1.80339 1.90856 1.95174 2.00622 2.23649 2.53170 2.55225 2.66300 3.38160 3.59587 3.67559 3.81517 3.88116 3.99359 4.03790 4.14443 4.29913 4.32015 4.36137 4.40166 4.41686 4.45675 4.63919 4.66066 4.70190 4.73862 4.76807 4.79948 4.81908 4.85851 4.87743 4.94900 4.99937 5.01606 5.20535 5.23838 5.40399 5.46399 5.51965 5.59386 5.65520 6.10513 6.27173 6.36581 6.78448 7.09453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.165 3.835 4 C -0.238 4.238 5 C -0.049 4.049 6 C -0.200 4.200 7 C -0.076 4.076 8 O -0.555 6.555 9 Si 0.990 3.010 10 H -0.252 1.252 11 H -0.280 1.280 12 H -0.231 1.231 13 C 0.178 3.822 14 O -0.301 6.301 15 C 0.035 3.965 16 C 0.498 3.502 17 O -0.559 6.559 18 N -0.589 5.589 19 C 0.051 3.949 20 C -0.193 4.193 21 Si 1.059 2.941 22 C -0.444 4.444 23 C -0.458 4.458 24 C -0.464 4.464 25 C -0.251 4.251 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.384 0.616 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.047 0.953 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -8.155 0.417 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.118 3.882 4 C -0.257 4.257 5 C -0.067 4.067 6 C -0.202 4.202 7 C -0.185 4.185 8 O -0.361 6.361 9 Si 0.812 3.188 10 H -0.176 1.176 11 H -0.205 1.205 12 H -0.154 1.154 13 C 0.132 3.868 14 O -0.213 6.213 15 C -0.043 4.043 16 C 0.285 3.715 17 O -0.437 6.437 18 N -0.323 5.323 19 C -0.090 4.090 20 C -0.360 4.360 21 Si 1.251 2.749 22 C -0.553 4.553 23 C -0.566 4.566 24 C -0.568 4.568 25 C -0.271 4.271 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.555 -6.926 0.927 7.840 hybrid contribution -0.219 -0.100 -0.478 0.535 sum -3.774 -7.025 0.449 7.987 Atomic orbital electron populations 1.23402 0.76032 1.05744 1.02618 1.86054 1.23716 1.26449 1.87934 1.18843 0.91634 0.84950 0.92729 1.21385 1.01599 0.91277 1.11448 1.20931 0.92182 0.98834 0.94761 1.19700 0.93448 0.94464 1.12553 1.24978 1.05927 0.98890 0.88684 1.86564 1.38875 1.93715 1.16969 0.85197 0.76648 0.75863 0.81101 1.17561 1.20510 1.15410 1.18584 0.81831 0.93137 0.93285 1.86232 1.15384 1.31677 1.87977 1.22805 0.89130 0.86361 1.06019 1.20380 0.88324 0.85251 0.77562 1.90748 1.80267 1.22626 1.50098 1.47444 1.05670 1.06977 1.72240 1.22375 1.02438 0.80177 1.04007 1.26800 0.82851 1.05463 1.20874 0.78726 0.65500 0.66330 0.64364 1.26076 1.05479 1.15636 1.08102 1.26192 1.20409 1.05233 1.04776 1.26463 1.07533 1.14720 1.08048 1.20564 0.93375 0.97451 1.15663 0.91377 0.86424 0.91369 0.82541 0.83204 0.88761 0.76771 0.86252 0.86711 0.90843 0.87899 0.89130 0.87039 0.91264 0.89550 0.91106 0.90687 0.91952 0.90951 0.89916 0.93304 0.91505 0.93373 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.41 10.49 -92.40 -0.97 -1.38 16 3 C 0.16 0.44 6.68 22.49 0.15 0.59 16 4 C -0.24 -0.09 9.04 22.38 0.20 0.11 16 5 C -0.05 -0.08 8.65 22.24 0.19 0.11 16 6 C -0.20 -1.19 5.28 -19.75 -0.10 -1.29 16 7 C -0.08 -0.52 2.38 71.23 0.17 -0.35 16 8 O -0.55 -5.04 12.88 -148.98 -1.92 -6.95 16 9 Si 0.99 2.11 25.48 68.60 1.75 3.86 16 10 H -0.25 -0.58 7.11 99.48 0.71 0.13 16 11 H -0.28 -1.79 7.11 99.48 0.71 -1.08 16 12 H -0.23 0.35 6.74 99.48 0.67 1.02 16 13 C 0.18 1.26 6.66 22.49 0.15 1.41 16 14 O -0.30 -3.06 9.00 -73.35 -0.66 -3.72 16 15 C 0.03 0.08 3.77 71.24 0.27 0.34 16 16 C 0.50 3.46 7.30 87.66 0.64 4.10 16 17 O -0.56 -9.67 15.52 15.99 0.25 -9.42 16 18 N -0.59 0.26 2.37 -649.30 -1.54 -1.28 16 19 C 0.05 -0.46 10.01 127.77 1.28 0.82 16 20 C -0.19 0.17 4.65 127.77 0.59 0.77 16 21 Si 1.06 -3.13 12.32 68.60 0.85 -2.28 16 22 C -0.44 2.62 7.97 113.37 0.90 3.53 16 23 C -0.46 0.88 8.65 113.37 0.98 1.86 16 24 C -0.46 -2.58 8.18 113.37 0.93 -1.65 16 25 C -0.25 -0.83 8.97 22.46 0.20 -0.63 16 26 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 27 H 0.12 -1.07 8.14 -2.39 -0.02 -1.09 16 28 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 29 H 0.16 -0.78 6.29 -2.91 -0.02 -0.79 16 30 H 0.15 -0.40 4.87 -2.91 -0.01 -0.42 16 31 H 0.09 0.98 7.82 -2.39 -0.02 0.96 16 32 H 0.38 0.23 8.70 -74.06 -0.64 -0.42 16 33 H 0.12 -0.48 6.92 -2.39 -0.02 -0.50 16 34 H 0.12 -0.33 7.63 -2.39 -0.02 -0.35 16 35 H 0.07 -0.77 8.14 -2.38 -0.02 -0.79 16 36 H 0.10 -1.28 6.83 -2.39 -0.02 -1.30 16 37 H 0.09 -1.11 6.44 -2.39 -0.02 -1.12 16 38 H 0.11 -0.72 7.89 -2.39 -0.02 -0.74 16 39 H 0.07 0.33 7.24 -2.39 -0.02 0.31 16 40 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 41 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 42 H 0.07 -0.49 7.47 -2.38 -0.02 -0.51 16 43 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 44 H 0.07 -0.13 7.96 -2.39 -0.02 -0.14 16 45 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 46 H 0.05 0.39 7.78 -2.38 -0.02 0.37 16 47 H 0.07 0.26 7.96 -2.39 -0.02 0.24 16 48 H 0.05 0.50 7.96 -2.39 -0.02 0.48 16 49 H 0.15 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -25.42 396.54 6.44 -18.97 By element: Atomic # 1 Polarization: -9.54 SS G_CDS: 1.02 Total: -8.51 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 7.67 Total: 10.72 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -1.54 Total: -1.28 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -3.30 Total: -21.47 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.59 Total: 1.57 kcal Total: -25.42 6.44 -18.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_4974312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.516 kcal (2) G-P(sol) polarization free energy of solvation -25.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds