Wall clock time and date at job start Sat Mar 6 2021 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38519 * 120.06958 * 359.72831 * 3 2 1 5 5 C 1.38296 * 119.99696 * 179.74377 * 4 3 2 6 6 C 1.50701 * 119.92580 * 180.23141 * 5 4 3 7 7 O 1.42903 * 109.47261 * 300.27493 * 6 5 4 8 8 Si 1.86295 * 109.47147 * 180.27619 * 6 5 4 9 9 H 1.48505 * 109.47118 * 59.99881 * 8 6 5 10 10 H 1.48498 * 109.47234 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46989 * 300.00353 * 8 6 5 12 12 C 1.38203 * 120.14679 * 0.51103 * 5 4 3 13 13 C 1.38288 * 120.14554 * 359.76377 * 12 5 4 14 14 C 1.38522 * 119.99990 * 359.97438 * 13 12 5 15 15 O 1.35994 * 120.07549 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99839 * 0.02908 * 15 14 13 17 17 C 1.50695 * 109.47370 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99773 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00497 * 179.97438 * 17 16 15 20 20 C 1.46502 * 119.99767 * 0.02562 * 19 17 16 21 21 C 1.46497 * 120.00646 * 180.02562 * 19 17 16 22 22 Si 1.86293 * 109.47297 * 90.00060 * 21 19 17 23 23 C 1.86305 * 109.47148 * 60.00464 * 22 21 19 24 24 C 1.86307 * 109.47460 * 180.02562 * 22 21 19 25 25 C 1.86303 * 109.47477 * 300.00488 * 22 21 19 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 29 29 H 1.08002 * 120.00791 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.47150 * 60.27802 * 6 5 4 31 31 H 0.96692 * 114.00195 * 300.00172 * 7 6 5 32 32 H 1.07996 * 119.92818 * 179.74666 * 12 5 4 33 33 H 1.07992 * 120.00165 * 179.97438 * 13 12 5 34 34 H 1.09003 * 109.46967 * 299.99497 * 16 15 14 35 35 H 1.08999 * 109.47403 * 59.99407 * 16 15 14 36 36 H 1.09002 * 109.47598 * 89.99768 * 20 19 17 37 37 H 1.09004 * 109.47568 * 209.99410 * 20 19 17 38 38 H 1.08999 * 109.46978 * 329.99735 * 20 19 17 39 39 H 1.09006 * 109.47459 * 210.00563 * 21 19 17 40 40 H 1.09007 * 109.47131 * 330.00145 * 21 19 17 41 41 H 1.08998 * 109.47189 * 60.00052 * 23 22 21 42 42 H 1.08996 * 109.47211 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46919 * 300.00211 * 23 22 21 44 44 H 1.08997 * 109.46877 * 60.00230 * 24 22 21 45 45 H 1.09001 * 109.46733 * 180.02562 * 24 22 21 46 46 H 1.08993 * 109.46868 * 300.00507 * 24 22 21 47 47 H 1.09005 * 109.46577 * 59.99803 * 25 22 21 48 48 H 1.08994 * 109.47324 * 179.97438 * 25 22 21 49 49 H 1.08999 * 109.46579 * 300.00029 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2936 2.3743 -0.0057 5 6 1.9230 3.6057 -0.0003 6 6 1.1023 4.8696 -0.0012 7 8 0.2783 4.9017 -1.1683 8 14 2.2371 6.3470 -0.0016 9 1 3.0943 6.3125 -1.2138 10 1 1.4284 7.5925 -0.0019 11 1 3.0935 6.3137 1.2112 12 6 3.3031 3.6798 0.0001 13 6 4.0606 2.5229 0.0000 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1475 -0.0005 16 6 5.6007 0.3005 -0.0005 17 6 6.2523 -1.0583 -0.0006 18 8 5.5673 -2.0593 -0.0001 19 7 7.5960 -1.1614 -0.0012 20 6 8.4234 0.0476 -0.0012 21 6 8.2294 -2.4824 -0.0018 22 14 8.4973 -3.0419 -1.7584 23 6 9.6001 -1.8241 -2.6368 24 6 9.3021 -4.7222 -1.7592 25 6 6.8569 -3.1394 -2.6362 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2150 2.3193 -0.0105 30 1 0.4732 4.8950 0.8885 31 1 0.7723 4.8817 -1.9993 32 1 3.7909 4.6433 0.0001 33 1 5.1389 2.5835 -0.0001 34 1 5.9069 0.8506 -0.8904 35 1 5.9071 0.8499 0.8896 36 1 8.6290 0.3472 1.0265 37 1 9.3629 -0.1550 -0.5154 38 1 7.8939 0.8501 -0.5146 39 1 9.1893 -2.4254 0.5118 40 1 7.5842 -3.1950 0.5121 41 1 10.5599 -1.7671 -2.1233 42 1 9.7565 -2.1512 -3.6647 43 1 9.1289 -0.8412 -2.6363 44 1 8.6565 -5.4344 -1.2455 45 1 9.4592 -5.0492 -2.7871 46 1 10.2618 -4.6655 -1.2456 47 1 6.3857 -2.1564 -2.6357 48 1 7.0136 -3.4663 -3.6640 49 1 6.2117 -3.8519 -2.1222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:58:32 Heat of formation + Delta-G solvation = -139.047979 kcal Electronic energy + Delta-G solvation = -28248.374149 eV Core-core repulsion = 24300.807180 eV Total energy + Delta-G solvation = -3947.566969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84750 -40.89457 -39.34747 -38.88273 -36.94992 -36.54591 -32.12162 -31.51020 -30.41533 -29.47579 -28.67196 -28.48910 -28.38526 -27.92078 -26.49385 -25.87334 -23.46053 -22.52828 -20.43992 -19.84419 -18.54276 -18.29845 -17.82080 -17.69091 -17.25752 -16.84755 -16.76140 -16.08192 -15.99895 -15.92668 -15.82609 -15.19034 -14.88341 -14.42484 -14.32928 -14.17931 -14.07692 -13.83793 -13.79774 -13.73273 -13.60478 -13.46884 -13.43551 -13.23727 -13.03197 -12.94701 -12.88935 -12.61690 -12.55720 -12.20492 -12.16132 -12.03962 -11.99418 -11.62144 -11.57283 -10.96524 -10.76112 -10.73543 -10.41512 -9.79841 -9.22716 -8.93282 0.14993 0.24507 1.20857 1.37108 1.45363 1.51554 1.56355 1.80509 1.95288 1.95908 2.01899 2.29837 2.52893 2.54011 2.66290 3.38511 3.49966 3.69255 3.80602 3.84086 3.97527 4.03054 4.13250 4.24589 4.31815 4.32666 4.35813 4.41755 4.59415 4.64560 4.66622 4.67065 4.69045 4.72899 4.79510 4.81668 4.86663 4.88997 4.97292 4.98386 5.01733 5.08548 5.33911 5.42837 5.51215 5.57485 5.59225 5.66243 5.95221 6.26394 6.50814 6.71513 7.10610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.078 3.922 4 C -0.147 4.147 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.988 3.012 9 H -0.245 1.245 10 H -0.279 1.279 11 H -0.251 1.251 12 C -0.123 4.123 13 C -0.162 4.162 14 C 0.083 3.917 15 O -0.314 6.314 16 C 0.034 3.966 17 C 0.496 3.504 18 O -0.565 6.565 19 N -0.589 5.589 20 C 0.050 3.950 21 C -0.193 4.193 22 Si 1.060 2.940 23 C -0.443 4.443 24 C -0.459 4.459 25 C -0.465 4.465 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.389 0.611 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 5.985 -0.473 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.812 3.188 9 H -0.169 1.169 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.141 4.141 13 C -0.180 4.180 14 C 0.037 3.963 15 O -0.227 6.227 16 C -0.043 4.043 17 C 0.283 3.717 18 O -0.444 6.444 19 N -0.323 5.323 20 C -0.091 4.091 21 C -0.360 4.360 22 Si 1.251 2.749 23 C -0.552 4.552 24 C -0.567 4.567 25 C -0.568 4.568 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.238 0.762 32 H 0.165 0.835 33 H 0.188 0.812 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.568 5.787 0.006 8.753 hybrid contribution -0.584 -0.733 -0.220 0.963 sum 5.983 5.053 -0.214 7.835 Atomic orbital electron populations 1.23302 0.76690 1.05194 1.02276 1.86194 1.23124 1.26616 1.89056 1.18683 0.89787 0.85762 1.02516 1.21028 1.00730 0.90227 1.04626 1.20227 0.94153 0.95308 1.02113 1.25110 1.00679 1.01304 0.92020 1.86478 1.36554 1.96889 1.16193 0.85143 0.76966 0.75057 0.81682 1.16861 1.20500 1.17502 1.21008 0.92896 0.98897 1.01249 1.21317 1.02064 0.89508 1.05094 1.18610 0.88379 0.86456 1.02840 1.86228 1.18191 1.29060 1.89252 1.22830 0.79357 0.95824 1.06303 1.20472 0.82994 0.90745 0.77454 1.90742 1.63512 1.39784 1.50328 1.47454 1.04234 1.08454 1.72167 1.22408 0.96969 0.85595 1.04133 1.26783 1.01377 0.87051 1.20794 0.78722 0.64590 0.67139 0.64417 1.26057 1.10158 1.10908 1.08051 1.26202 1.07971 1.17754 1.04751 1.26486 1.19448 1.02869 1.08041 0.87219 0.91588 0.91546 0.83491 0.85994 0.76185 0.83548 0.81153 0.85886 0.86175 0.90697 0.87988 0.88744 0.86946 0.91400 0.89480 0.91141 0.90537 0.92031 0.90986 0.89871 0.93365 0.91547 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -4.06 10.28 -79.61 -0.82 -4.88 16 3 C 0.08 0.71 6.70 22.57 0.15 0.86 16 4 C -0.15 -0.61 8.59 22.35 0.19 -0.42 16 5 C -0.12 -0.09 5.39 -19.86 -0.11 -0.20 16 6 C -0.08 0.16 2.82 71.24 0.20 0.36 16 7 O -0.55 0.16 12.76 -148.98 -1.90 -1.74 16 8 Si 0.99 -3.43 25.06 68.60 1.72 -1.71 16 9 H -0.25 1.07 7.11 99.48 0.71 1.78 16 10 H -0.28 -0.20 7.11 99.48 0.71 0.50 16 11 H -0.25 0.83 7.11 99.48 0.71 1.53 16 12 C -0.12 0.15 8.66 22.27 0.19 0.34 16 13 C -0.16 0.07 9.04 22.35 0.20 0.27 16 14 C 0.08 0.61 6.70 22.57 0.15 0.76 16 15 O -0.31 -3.40 9.46 -67.08 -0.63 -4.04 16 16 C 0.03 0.02 3.77 71.23 0.27 0.29 16 17 C 0.50 3.08 7.30 87.66 0.64 3.72 16 18 O -0.56 -9.81 15.53 15.99 0.25 -9.56 16 19 N -0.59 0.91 2.37 -649.30 -1.54 -0.63 16 20 C 0.05 -0.54 10.00 127.77 1.28 0.73 16 21 C -0.19 0.31 4.65 127.77 0.59 0.91 16 22 Si 1.06 -3.68 12.32 68.60 0.85 -2.83 16 23 C -0.44 2.99 7.97 113.37 0.90 3.90 16 24 C -0.46 1.04 8.65 113.37 0.98 2.02 16 25 C -0.46 -2.56 8.19 113.37 0.93 -1.63 16 26 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.07 0.03 7.65 -2.39 -0.02 0.01 16 28 H 0.07 0.02 7.68 -2.38 -0.02 0.00 16 29 H 0.15 0.29 6.30 -2.91 -0.02 0.27 16 30 H 0.12 -0.38 7.96 -2.39 -0.02 -0.40 16 31 H 0.39 -2.56 8.70 -74.06 -0.64 -3.20 16 32 H 0.15 -0.86 4.86 -2.91 -0.01 -0.87 16 33 H 0.17 -1.42 6.30 -2.91 -0.02 -1.43 16 34 H 0.12 -0.81 6.92 -2.39 -0.02 -0.83 16 35 H 0.12 -0.71 7.63 -2.39 -0.02 -0.72 16 36 H 0.07 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.10 -1.43 6.82 -2.38 -0.02 -1.45 16 38 H 0.09 -1.41 6.44 -2.39 -0.02 -1.42 16 39 H 0.11 -0.83 7.89 -2.38 -0.02 -0.85 16 40 H 0.07 0.29 7.24 -2.38 -0.02 0.27 16 41 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 42 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 43 H 0.08 -0.59 7.46 -2.39 -0.02 -0.61 16 44 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 45 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 46 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 47 H 0.05 0.39 7.78 -2.38 -0.02 0.37 16 48 H 0.07 0.26 7.96 -2.39 -0.02 0.24 16 49 H 0.05 0.49 7.96 -2.39 -0.02 0.47 16 Total: 0.00 -28.10 397.03 6.67 -21.43 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: 1.06 Total: -9.10 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 7.69 Total: 13.07 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -1.54 Total: -0.63 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -3.11 Total: -20.22 kcal Atomic # 14 Polarization: -7.11 SS G_CDS: 2.56 Total: -4.55 kcal Total: -28.10 6.67 -21.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.618 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds