Wall clock time and date at job start Sat Mar 6 2021 15:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00000 * 2 1 4 4 Si 1.86295 * 109.47220 * 270.00286 * 3 2 1 5 5 C 1.86301 * 109.47405 * 60.00012 * 4 3 2 6 6 C 1.86298 * 109.47339 * 180.02562 * 4 3 2 7 7 C 1.86300 * 109.47262 * 299.99977 * 4 3 2 8 8 C 1.34777 * 119.99747 * 180.02562 * 2 1 3 9 9 O 1.21282 * 119.99517 * 180.02562 * 8 2 1 10 10 C 1.50696 * 120.00401 * 359.97438 * 8 2 1 11 11 N 1.46497 * 109.47264 * 180.02562 * 10 8 2 12 12 C 1.36838 * 125.05962 * 264.97485 * 11 10 8 13 13 C 1.34235 * 109.93800 * 180.02562 * 12 11 10 14 14 C 1.50692 * 126.50345 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47457 * 104.96913 * 14 13 12 16 16 Si 1.86305 * 109.47067 * 344.97200 * 14 13 12 17 17 H 1.48501 * 109.47060 * 60.00119 * 16 14 13 18 18 H 1.48503 * 109.47195 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47092 * 299.99928 * 16 14 13 20 20 C 1.46498 * 106.99657 * 359.77818 * 13 12 11 21 21 C 1.39590 * 134.02707 * 179.57964 * 20 13 12 22 22 C 1.36668 * 119.76122 * 180.37212 * 21 20 13 23 23 C 1.38785 * 120.52395 * 0.26101 * 22 21 20 24 24 C 1.37786 * 120.67117 * 359.97001 * 23 22 21 25 25 C 1.37687 * 125.06449 * 85.00068 * 11 10 8 26 26 H 1.08995 * 109.47224 * 269.99626 * 1 2 3 27 27 H 1.09003 * 109.47226 * 30.00116 * 1 2 3 28 28 H 1.09002 * 109.47438 * 149.99823 * 1 2 3 29 29 H 1.09003 * 109.47049 * 30.00218 * 3 2 1 30 30 H 1.08998 * 109.47014 * 149.99965 * 3 2 1 31 31 H 1.08993 * 109.47011 * 59.99878 * 5 4 3 32 32 H 1.08999 * 109.47088 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46941 * 299.99691 * 5 4 3 34 34 H 1.08998 * 109.47083 * 59.99564 * 6 4 3 35 35 H 1.08997 * 109.47369 * 179.97438 * 6 4 3 36 36 H 1.09003 * 109.46862 * 299.99890 * 6 4 3 37 37 H 1.09008 * 109.47265 * 59.99590 * 7 4 3 38 38 H 1.08999 * 109.47776 * 180.02562 * 7 4 3 39 39 H 1.09002 * 109.47327 * 300.00310 * 7 4 3 40 40 H 1.09005 * 109.47029 * 59.99929 * 10 8 2 41 41 H 1.09002 * 109.46874 * 300.00441 * 10 8 2 42 42 H 1.07997 * 125.03385 * 0.04175 * 12 11 10 43 43 H 1.08998 * 109.47154 * 224.97146 * 14 13 12 44 44 H 0.96706 * 114.00656 * 180.02562 * 15 14 13 45 45 H 1.08002 * 120.12275 * 0.65785 * 21 20 13 46 46 H 1.07995 * 119.73473 * 180.27672 * 22 21 20 47 47 H 1.08005 * 119.66135 * 179.97438 * 23 22 21 48 48 H 1.08002 * 120.10859 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 14 2.5080 1.8066 -1.7564 5 6 0.8801 2.0294 -2.6346 6 6 3.4401 3.4196 -1.7564 7 6 3.5148 0.5083 -2.6347 8 6 2.1389 -1.1672 -0.0005 9 8 3.3517 -1.1672 -0.0001 10 6 1.3854 -2.4723 -0.0005 11 7 2.3374 -3.5858 -0.0005 12 6 2.7736 -4.2470 -1.1163 13 6 3.6386 -5.2124 -0.7674 14 6 4.3443 -6.1634 -1.6994 15 8 5.7114 -5.7705 -1.8353 16 14 3.5181 -6.1245 -3.3688 17 1 3.5850 -4.7481 -3.9222 18 1 4.2139 -7.0611 -4.2874 19 1 2.0973 -6.5328 -3.2276 20 6 3.7710 -5.1622 0.6907 21 6 4.5017 -5.8991 1.6244 22 6 4.3998 -5.6003 2.9541 23 6 3.5714 -4.5733 3.3844 24 6 2.8377 -3.8365 2.4803 25 6 2.9261 -4.1232 1.1222 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 0.2911 2.7890 -2.1208 32 1 1.0618 2.3437 -3.6624 33 1 0.3351 1.0854 -2.6347 34 1 4.3925 3.2888 -1.2427 35 1 3.6222 3.7340 -2.7841 36 1 2.8514 4.1794 -1.2424 37 1 2.9698 -0.4358 -2.6347 38 1 3.6968 0.8231 -3.6623 39 1 4.4672 0.3779 -2.1209 40 1 0.7584 -2.5298 -0.8903 41 1 0.7591 -2.5302 0.8897 42 1 2.4676 -4.0249 -2.1279 43 1 4.2952 -7.1736 -1.2931 44 1 6.2277 -6.3393 -2.4228 45 1 5.1487 -6.6994 1.2968 46 1 4.9687 -6.1677 3.6757 47 1 3.5011 -4.3494 4.4386 48 1 2.1961 -3.0391 2.8251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11678528_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:05:57 Heat of formation + Delta-G solvation = -27.866032 kcal Electronic energy + Delta-G solvation = -27526.112101 eV Core-core repulsion = 23898.852535 eV Total energy + Delta-G solvation = -3627.259566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54682 -40.71263 -38.07170 -37.64131 -36.56257 -34.20584 -31.59594 -30.31135 -29.85034 -29.37470 -28.66466 -28.43091 -27.98294 -26.70258 -25.22390 -23.70562 -22.56600 -20.69590 -20.32808 -18.48062 -18.33352 -18.08110 -17.76064 -16.89053 -16.70473 -16.43200 -15.93455 -15.46397 -15.12241 -14.87020 -14.78145 -14.56867 -14.37568 -14.29449 -14.20716 -14.08596 -13.86554 -13.80188 -13.62716 -13.47075 -13.34090 -13.22195 -13.06725 -12.95970 -12.88992 -12.72694 -12.55278 -12.48678 -12.13728 -11.97902 -11.68689 -11.64926 -11.09121 -10.83344 -10.79258 -10.53273 -10.18450 -9.23263 -9.16812 -8.63703 0.12545 0.63813 1.18610 1.31588 1.38643 1.46799 1.54388 1.69182 1.78026 1.83521 1.91831 1.94943 2.25509 2.62669 2.93499 3.43330 3.57377 3.64321 3.77619 3.83272 4.00956 4.05107 4.22461 4.27415 4.31562 4.38767 4.41407 4.57487 4.64552 4.64985 4.68955 4.69836 4.75028 4.77243 4.78558 4.83761 4.86063 4.89590 4.96962 4.99040 5.13748 5.41821 5.47929 5.50633 5.54776 5.63206 5.65613 5.73458 5.74746 6.13511 6.21715 6.34034 6.90153 7.09433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.590 5.590 3 C -0.191 4.191 4 Si 1.059 2.941 5 C -0.442 4.442 6 C -0.462 4.462 7 C -0.461 4.461 8 C 0.475 3.525 9 O -0.564 6.564 10 C 0.086 3.914 11 N -0.467 5.467 12 C 0.060 3.940 13 C -0.182 4.182 14 C -0.054 4.054 15 O -0.570 6.570 16 Si 0.983 3.017 17 H -0.269 1.269 18 H -0.250 1.250 19 H -0.247 1.247 20 C -0.116 4.116 21 C -0.084 4.084 22 C -0.153 4.153 23 C -0.106 4.106 24 C -0.136 4.136 25 C 0.091 3.909 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.157 0.843 41 H 0.142 0.858 42 H 0.185 0.815 43 H 0.081 0.919 44 H 0.392 0.608 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 1.750 -1.353 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.323 5.323 3 C -0.359 4.359 4 Si 1.250 2.750 5 C -0.551 4.551 6 C -0.569 4.569 7 C -0.565 4.565 8 C 0.262 3.738 9 O -0.443 6.443 10 C -0.038 4.038 11 N -0.149 5.149 12 C -0.066 4.066 13 C -0.189 4.189 14 C -0.163 4.163 15 O -0.378 6.378 16 Si 0.805 3.195 17 H -0.193 1.193 18 H -0.173 1.173 19 H -0.171 1.171 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.172 4.172 23 C -0.125 4.125 24 C -0.157 4.157 25 C -0.015 4.015 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.202 0.798 43 H 0.099 0.901 44 H 0.242 0.758 45 H 0.144 0.856 46 H 0.158 0.842 47 H 0.164 0.836 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.705 2.470 -1.738 9.214 hybrid contribution 1.077 -0.354 0.220 1.155 sum -7.627 2.116 -1.518 8.060 Atomic orbital electron populations 1.22378 0.76606 1.05999 1.04002 1.47571 1.08352 1.04482 1.71924 1.26716 1.00309 0.88358 1.20501 0.78736 0.67154 0.64533 0.64573 1.26047 1.15523 1.05503 1.08005 1.26236 1.08562 1.17398 1.04701 1.26453 1.09072 1.13049 1.07956 1.21339 0.88255 0.86694 0.77529 1.90785 1.15656 1.87366 1.50480 1.22041 0.90548 0.81790 1.09452 1.43402 1.38920 1.28254 1.04336 1.21853 0.99145 0.93764 0.91826 1.19858 1.03938 1.03003 0.92124 1.24234 0.86443 0.97873 1.07749 1.86539 1.21345 1.58154 1.71787 0.85295 0.79886 0.80174 0.74182 1.19330 1.17299 1.17075 1.19339 1.00475 0.98754 0.93433 1.20485 0.98059 0.99093 0.92582 1.20939 1.01112 0.99580 0.95568 1.21139 0.95980 0.95293 1.00043 1.20220 1.03836 1.02469 0.89133 1.18432 0.97636 0.96314 0.89073 0.90915 0.88251 0.88548 0.87343 0.91746 0.89611 0.91152 0.90361 0.92205 0.91009 0.89956 0.93071 0.91593 0.93831 0.82567 0.84081 0.79836 0.90098 0.75806 0.85576 0.84151 0.83586 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.61 10.00 127.77 1.28 0.67 16 2 N -0.59 1.79 2.38 -649.30 -1.54 0.24 16 3 C -0.19 0.39 4.65 127.77 0.59 0.99 16 4 Si 1.06 -3.99 12.32 68.60 0.85 -3.14 16 5 C -0.44 3.17 7.97 113.37 0.90 4.07 16 6 C -0.46 0.88 8.65 113.37 0.98 1.86 16 7 C -0.46 -2.19 8.18 113.37 0.93 -1.26 16 8 C 0.48 1.66 7.29 87.66 0.64 2.30 16 9 O -0.56 -8.30 15.45 -3.04 -0.05 -8.34 16 10 C 0.09 -0.19 5.03 85.63 0.43 0.24 16 11 N -0.47 -3.06 2.27 -520.01 -1.18 -4.24 16 12 C 0.06 0.43 9.89 83.00 0.82 1.25 16 13 C -0.18 -1.84 5.61 -18.63 -0.10 -1.95 16 14 C -0.05 -0.26 3.05 71.23 0.22 -0.05 16 15 O -0.57 -4.12 12.86 -148.98 -1.92 -6.03 16 16 Si 0.98 0.84 26.08 68.60 1.79 2.63 16 17 H -0.27 -1.00 7.03 99.48 0.70 -0.30 16 18 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 19 H -0.25 -0.09 7.11 99.48 0.71 0.62 16 20 C -0.12 -1.49 6.35 -20.20 -0.13 -1.61 16 21 C -0.08 -0.89 10.05 22.23 0.22 -0.66 16 22 C -0.15 -1.15 9.97 22.03 0.22 -0.93 16 23 C -0.11 -0.68 10.01 22.29 0.22 -0.46 16 24 C -0.14 -1.08 10.00 22.37 0.22 -0.86 16 25 C 0.09 0.98 6.80 39.03 0.27 1.24 16 26 H 0.07 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.10 -1.44 6.82 -2.39 -0.02 -1.46 16 28 H 0.10 -1.56 6.44 -2.39 -0.02 -1.57 16 29 H 0.11 -0.78 7.89 -2.39 -0.02 -0.80 16 30 H 0.06 0.28 7.24 -2.39 -0.02 0.26 16 31 H 0.08 -0.81 7.96 -2.39 -0.02 -0.83 16 32 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.08 -0.67 7.46 -2.38 -0.02 -0.68 16 34 H 0.06 0.03 7.96 -2.39 -0.02 0.02 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.05 0.32 7.78 -2.38 -0.02 0.30 16 38 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 39 H 0.04 0.45 7.96 -2.39 -0.02 0.43 16 40 H 0.16 -1.61 7.38 -2.38 -0.02 -1.63 16 41 H 0.14 -1.07 8.11 -2.39 -0.02 -1.09 16 42 H 0.18 0.28 6.29 -2.91 -0.02 0.27 16 43 H 0.08 0.14 7.96 -2.39 -0.02 0.12 16 44 H 0.39 -1.15 8.74 -74.05 -0.65 -1.80 16 45 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.14 0.37 8.06 -2.91 -0.02 0.34 16 47 H 0.15 0.15 8.06 -2.91 -0.02 0.12 16 48 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 Total: 0.00 -28.02 394.35 6.71 -21.31 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: 1.04 Total: -7.27 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 7.71 Total: 4.84 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -2.72 Total: -4.00 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.96 Total: -14.37 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.63 Total: -0.51 kcal Total: -28.02 6.71 -21.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11678528_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.552 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds