Wall clock time and date at job start Sat Mar 6 2021 18:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 117.00144 * 2 1 4 4 C 1.38522 * 120.06809 * 0.02562 * 3 2 1 5 5 C 1.38292 * 119.99253 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.92466 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47079 * 255.00038 * 6 5 4 8 8 Si 1.86301 * 109.47149 * 14.99533 * 6 5 4 9 9 H 1.48506 * 109.47302 * 59.99966 * 8 6 5 10 10 H 1.48503 * 109.47334 * 300.00099 * 8 6 5 11 11 H 1.48500 * 109.47376 * 180.02562 * 8 6 5 12 12 C 1.38205 * 120.14718 * 0.26617 * 5 4 3 13 13 N 1.48013 * 119.92321 * 179.70850 * 12 5 4 14 14 O 1.21800 * 119.99607 * 180.02562 * 13 12 5 15 15 O 1.21799 * 119.99792 * 0.02562 * 13 12 5 16 16 C 1.38278 * 120.14815 * 359.45385 * 12 5 4 17 17 C 1.38529 * 120.00011 * 0.55053 * 16 12 5 18 18 O 1.35989 * 120.07565 * 179.74671 * 17 16 12 19 19 C 1.42903 * 116.99832 * 359.97438 * 18 17 16 20 20 C 1.50706 * 109.46793 * 179.97438 * 19 18 17 21 21 O 1.21271 * 120.00095 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99614 * 180.02562 * 20 19 18 23 23 C 1.46494 * 119.99930 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47541 * 179.97438 * 23 22 20 25 25 C 1.47205 * 109.47607 * 179.97438 * 24 23 22 26 26 C 9.94693 * 101.54376 * 359.96530 * 16 1 2 27 27 Si 9.99489 * 136.91641 * 359.61752 * 18 1 2 28 28 C 1.86302 * 109.47367 * 15.39245 * 27 26 25 29 29 C 1.86304 * 109.47224 * 135.38970 * 27 26 25 30 30 C 1.86303 * 109.47242 * 255.39007 * 27 26 25 31 31 H 1.09004 * 109.46829 * 59.99976 * 1 2 3 32 32 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47094 * 299.99861 * 1 2 3 34 34 H 1.07992 * 120.00675 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.47380 * 134.99435 * 6 5 4 36 36 H 0.96696 * 114.00435 * 59.99627 * 7 6 5 37 37 H 1.07998 * 120.00382 * 180.27099 * 16 12 5 38 38 H 1.08996 * 109.47399 * 299.99766 * 19 18 17 39 39 H 1.09003 * 109.47212 * 60.00069 * 19 18 17 40 40 H 0.97002 * 120.00312 * 359.97438 * 22 20 19 41 41 H 1.09006 * 109.47300 * 299.99790 * 23 22 20 42 42 H 1.08997 * 109.47573 * 59.99259 * 23 22 20 43 43 H 1.08998 * 109.47474 * 300.00120 * 24 23 22 44 44 H 1.09003 * 109.46935 * 59.99674 * 24 23 22 45 45 H 1.08998 * 109.46875 * 59.99263 * 28 27 26 46 46 H 1.08995 * 109.47191 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46461 * 299.99990 * 28 27 26 48 48 H 1.08999 * 109.46568 * 59.99897 * 29 27 26 49 49 H 1.08995 * 109.46939 * 179.97438 * 29 27 26 50 50 H 1.08995 * 109.47532 * 300.00478 * 29 27 26 51 51 H 1.09006 * 109.46696 * 59.99597 * 30 27 26 52 52 H 1.08993 * 109.46974 * 180.02562 * 30 27 26 53 53 H 1.09000 * 109.46914 * 300.00069 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3744 0.0005 5 6 1.9229 3.6057 0.0011 6 6 1.1021 4.8696 0.0011 7 8 1.1356 5.4593 -1.3001 8 14 -0.6592 4.4663 0.4548 9 1 -0.6942 3.8534 1.8070 10 1 -1.2195 3.5123 -0.5357 11 1 -1.4682 5.7117 0.4542 12 6 3.3029 3.6797 -0.0045 13 7 3.9715 5.0003 -0.0104 14 8 5.1876 5.0671 -0.0158 15 8 3.3055 6.0200 -0.0099 16 6 4.0605 2.5230 0.0008 17 6 3.4363 1.2862 0.0002 18 8 4.1799 0.1476 0.0001 19 6 5.6007 0.3006 0.0003 20 6 6.2522 -1.0583 0.0009 21 8 5.5673 -2.0591 0.0007 22 7 7.5961 -1.1613 0.0016 23 6 8.2294 -2.4822 0.0016 24 6 9.7506 -2.3185 0.0018 25 6 10.3871 -3.6459 0.0025 26 6 10.8947 -4.7044 0.0044 27 14 11.7161 -6.4175 0.0391 28 6 10.4613 -7.7173 -0.4157 29 6 13.1218 -6.4571 -1.1829 30 6 12.3707 -6.7579 1.7498 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2149 2.3193 0.0005 35 1 1.5133 5.5699 0.7281 36 1 0.7841 4.8908 -1.9988 37 1 5.1388 2.5835 0.0009 38 1 5.9070 0.8504 -0.8896 39 1 5.9069 0.8504 0.8903 40 1 8.1439 -0.3608 0.0013 41 1 7.9228 -3.0323 0.8913 42 1 7.9237 -3.0319 -0.8886 43 1 10.0571 -1.7687 -0.8880 44 1 10.0567 -1.7687 0.8919 45 1 10.0783 -7.5181 -1.4166 46 1 10.9324 -8.7000 -0.3954 47 1 9.6389 -7.6942 0.2993 48 1 13.8560 -5.6966 -0.9168 49 1 13.5933 -7.4396 -1.1627 50 1 12.7390 -6.2579 -2.1838 51 1 11.5482 -6.7347 2.4647 52 1 12.8423 -7.7403 1.7695 53 1 13.1049 -5.9974 2.0158 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11968232_4549636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:45:50 Heat of formation + Delta-G solvation = -101.875897 kcal Electronic energy + Delta-G solvation = -35466.501262 eV Core-core repulsion = 30433.077479 eV Total energy + Delta-G solvation = -5033.423783 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 410.161 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.38038 -42.14609 -41.07766 -39.72739 -39.22789 -37.72511 -37.17984 -36.98417 -34.46417 -32.71893 -32.60495 -31.17297 -29.52417 -29.31728 -28.76122 -28.30357 -28.29118 -27.91266 -25.88610 -24.68101 -23.76345 -23.18265 -21.97299 -20.79258 -19.86985 -19.57371 -18.94343 -18.65661 -18.47352 -18.16112 -17.84316 -17.54756 -17.42498 -17.04998 -16.82812 -16.58439 -16.43015 -16.17000 -15.67730 -15.25321 -15.14609 -14.95309 -14.84252 -14.52630 -14.12557 -14.00352 -13.94512 -13.90441 -13.89004 -13.56105 -13.50203 -13.25052 -13.17555 -13.12664 -13.04584 -13.00136 -12.73794 -12.51202 -12.46988 -12.42119 -12.22552 -12.21082 -12.06422 -12.02565 -11.61354 -11.53245 -11.38727 -11.20248 -10.59310 -10.55520 -10.52239 -10.46682 -10.36467 -9.53219 -1.34956 -0.47283 0.17221 0.31357 0.99745 1.11627 1.31294 1.32963 1.45637 1.47114 1.47878 1.76950 1.82553 1.86250 1.88181 2.25324 2.44951 2.46834 2.50910 2.95164 3.14874 3.25154 3.40734 3.47349 3.55097 3.84452 3.87678 3.90115 3.91145 4.01462 4.02051 4.04960 4.07295 4.23658 4.24222 4.32643 4.44545 4.60076 4.65903 4.71536 4.80111 4.81466 4.81896 4.82572 4.85391 4.87518 4.88201 4.90950 5.14092 5.28715 5.52516 5.56571 5.65718 5.67059 5.99345 6.29611 6.51780 6.64548 6.70787 6.99021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.308 6.308 3 C 0.167 3.833 4 C -0.181 4.181 5 C -0.038 4.038 6 C -0.099 4.099 7 O -0.533 6.533 8 Si 0.973 3.027 9 H -0.246 1.246 10 H -0.222 1.222 11 H -0.264 1.264 12 C -0.040 4.040 13 N 0.035 4.965 14 O -0.191 6.191 15 O -0.152 6.152 16 C -0.108 4.108 17 C 0.101 3.899 18 O -0.292 6.292 19 C 0.028 3.972 20 C 0.515 3.485 21 O -0.569 6.569 22 N -0.708 5.708 23 C 0.130 3.870 24 C -0.024 4.024 25 C -0.216 4.216 26 C -0.429 4.429 27 Si 1.195 2.805 28 C -0.466 4.466 29 C -0.460 4.460 30 C -0.462 4.462 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.181 0.819 35 H 0.128 0.872 36 H 0.386 0.614 37 H 0.187 0.813 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.425 0.575 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.086 0.914 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -3.116 0.122 3.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.119 3.881 4 C -0.199 4.199 5 C -0.040 4.040 6 C -0.207 4.207 7 O -0.339 6.339 8 Si 0.792 3.208 9 H -0.169 1.169 10 H -0.145 1.145 11 H -0.188 1.188 12 C -0.125 4.125 13 N 0.549 4.451 14 O -0.399 6.399 15 O -0.369 6.369 16 C -0.127 4.127 17 C 0.054 3.946 18 O -0.205 6.205 19 C -0.049 4.049 20 C 0.301 3.699 21 O -0.447 6.447 22 N -0.363 5.363 23 C 0.007 3.993 24 C -0.061 4.061 25 C -0.216 4.216 26 C -0.462 4.462 27 Si 1.377 2.623 28 C -0.573 4.573 29 C -0.568 4.568 30 C -0.569 4.569 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.198 0.802 35 H 0.145 0.855 36 H 0.235 0.765 37 H 0.204 0.796 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.105 0.895 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.191 -4.464 0.664 4.667 hybrid contribution 0.628 0.906 -0.379 1.166 sum -0.563 -3.558 0.285 3.613 Atomic orbital electron populations 1.23737 0.75075 1.07034 1.03560 1.86324 1.24473 1.24753 1.86385 1.18685 0.89328 0.86215 0.93903 1.21187 1.02045 0.88761 1.07956 1.20199 0.91322 0.97489 0.95002 1.25589 1.10608 0.93496 0.91013 1.86683 1.86970 1.44350 1.15906 0.85422 0.72745 0.80930 0.81704 1.16899 1.14520 1.18794 1.20510 0.92568 0.82175 1.17210 1.43643 1.00821 1.03284 0.97309 1.94511 0.96438 1.94059 1.54931 1.94577 1.64423 1.25148 1.52759 1.20931 1.03127 0.88038 1.00641 1.17933 0.88605 0.85233 1.02820 1.86297 1.18537 1.26916 1.88760 1.22912 0.78714 0.95634 1.07638 1.20384 0.82866 0.90646 0.75986 1.90789 1.64001 1.40016 1.49855 1.45585 1.05412 1.10350 1.74973 1.21144 0.91809 0.84298 1.02097 1.18953 0.91261 0.90072 1.05813 1.24173 1.00062 0.96943 1.00434 1.37141 1.01350 1.06877 1.00788 0.76232 0.63820 0.55833 0.66371 1.26275 1.12313 1.13214 1.05448 1.26201 1.13723 1.05402 1.11439 1.26222 1.06677 1.05884 1.18113 0.90044 0.85762 0.90253 0.80221 0.85490 0.76511 0.79638 0.85047 0.85021 0.73624 0.92249 0.92283 0.87077 0.87049 0.91401 0.89482 0.91547 0.91081 0.89532 0.91276 0.91412 0.89506 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.55 10.28 -79.65 -0.82 -1.37 16 3 C 0.17 0.10 6.70 22.57 0.15 0.25 16 4 C -0.18 0.57 7.65 22.35 0.17 0.74 16 5 C -0.04 0.01 5.26 -19.86 -0.10 -0.10 16 6 C -0.10 0.06 1.74 71.24 0.12 0.18 16 7 O -0.53 -0.55 11.77 -129.49 -1.52 -2.07 16 8 Si 0.97 -4.69 25.49 68.60 1.75 -2.94 16 9 H -0.25 1.12 7.11 99.48 0.71 1.83 16 10 H -0.22 2.03 6.73 99.48 0.67 2.70 16 11 H -0.26 0.15 7.11 99.48 0.71 0.86 16 12 C -0.04 -0.12 6.84 36.38 0.25 0.13 16 13 N 0.04 0.30 4.45 -46.46 -0.21 0.09 16 14 O -0.19 -1.84 18.44 18.89 0.35 -1.49 16 15 O -0.15 -1.69 14.61 25.14 0.37 -1.32 16 16 C -0.11 0.07 8.54 22.35 0.19 0.26 16 17 C 0.10 0.13 6.70 22.57 0.15 0.28 16 18 O -0.29 -1.17 9.46 -67.01 -0.63 -1.80 16 19 C 0.03 -0.12 5.22 71.24 0.37 0.26 16 20 C 0.52 1.24 7.91 87.66 0.69 1.93 16 21 O -0.57 -8.16 16.50 16.04 0.26 -7.90 16 22 N -0.71 2.93 5.56 -463.08 -2.57 0.35 16 23 C 0.13 0.00 5.63 86.38 0.49 0.49 16 24 C -0.02 0.08 5.82 28.79 0.17 0.25 16 25 C -0.22 -0.80 13.34 31.13 0.42 -0.38 16 26 C -0.43 -1.22 12.15 74.32 0.90 -0.32 16 27 Si 1.20 -5.97 14.26 68.60 0.98 -4.99 16 28 C -0.47 1.44 8.65 113.37 0.98 2.42 16 29 C -0.46 2.02 8.65 113.37 0.98 3.00 16 30 C -0.46 1.90 8.65 113.37 0.98 2.88 16 31 H 0.08 -0.87 7.66 -2.39 -0.02 -0.89 16 32 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 33 H 0.08 -0.82 7.66 -2.39 -0.02 -0.84 16 34 H 0.18 -1.51 3.12 -2.91 -0.01 -1.52 16 35 H 0.13 0.24 6.09 -2.39 -0.01 0.22 16 36 H 0.39 -2.83 8.70 -74.06 -0.64 -3.47 16 37 H 0.19 -1.06 5.85 -2.91 -0.02 -1.08 16 38 H 0.13 -1.38 7.66 -2.39 -0.02 -1.39 16 39 H 0.13 -1.39 7.66 -2.39 -0.02 -1.41 16 40 H 0.43 -5.33 8.47 -92.71 -0.79 -6.12 16 41 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 42 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 46 H 0.09 -0.45 7.96 -2.39 -0.02 -0.46 16 47 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 48 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 49 H 0.09 -0.53 7.96 -2.39 -0.02 -0.55 16 50 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 51 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 52 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 53 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 Total: 0.00 -32.63 456.28 6.25 -26.38 By element: Atomic # 1 Polarization: -16.62 SS G_CDS: 0.27 Total: -16.35 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 8.03 Total: 13.39 kcal Atomic # 7 Polarization: 3.22 SS G_CDS: -2.78 Total: 0.44 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -2.00 Total: -15.95 kcal Atomic # 14 Polarization: -10.65 SS G_CDS: 2.73 Total: -7.93 kcal Total: -32.63 6.25 -26.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11968232_4549636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.493 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds