Wall clock time and date at job start Sat Mar 6 2021 18:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38519 * 120.06958 * 359.72831 * 3 2 1 5 5 C 1.38296 * 119.99696 * 179.74377 * 4 3 2 6 6 C 1.50701 * 119.92580 * 180.23141 * 5 4 3 7 7 O 1.42903 * 109.47261 * 300.27493 * 6 5 4 8 8 Si 1.86295 * 109.47147 * 180.27619 * 6 5 4 9 9 H 1.48505 * 109.47118 * 59.99881 * 8 6 5 10 10 H 1.48498 * 109.47234 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46989 * 300.00353 * 8 6 5 12 12 C 1.38203 * 120.14679 * 0.51103 * 5 4 3 13 13 C 1.38288 * 120.14554 * 359.76377 * 12 5 4 14 14 C 1.38522 * 119.99990 * 359.97438 * 13 12 5 15 15 O 1.35994 * 120.07549 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99839 * 0.02908 * 15 14 13 17 17 C 1.50695 * 109.47370 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99773 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00497 * 179.97438 * 17 16 15 20 20 C 1.46497 * 120.00646 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47618 * 180.02562 * 20 19 17 22 22 C 1.47200 * 109.47166 * 179.97438 * 21 20 19 23 23 C 9.94684 * 101.54411 * 0.02562 * 13 1 2 24 24 Si 9.99489 * 136.91597 * 0.26212 * 15 1 2 25 25 C 1.86299 * 109.47001 * 293.45135 * 24 23 22 26 26 C 1.86290 * 109.47145 * 53.45627 * 24 23 22 27 27 C 1.86297 * 109.46702 * 173.45514 * 24 23 22 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 31 31 H 1.08002 * 120.00791 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47150 * 60.27802 * 6 5 4 33 33 H 0.96692 * 114.00195 * 300.00172 * 7 6 5 34 34 H 1.07996 * 119.92818 * 179.74666 * 12 5 4 35 35 H 1.07992 * 120.00165 * 179.97438 * 13 12 5 36 36 H 1.09003 * 109.46967 * 299.99497 * 16 15 14 37 37 H 1.08999 * 109.47403 * 59.99407 * 16 15 14 38 38 H 0.97006 * 120.00221 * 0.02562 * 19 17 16 39 39 H 1.09003 * 109.46836 * 300.00525 * 20 19 17 40 40 H 1.08999 * 109.47022 * 60.00121 * 20 19 17 41 41 H 1.08998 * 109.46886 * 300.00339 * 21 20 19 42 42 H 1.09003 * 109.46538 * 59.99829 * 21 20 19 43 43 H 1.09001 * 109.47034 * 60.01037 * 25 24 23 44 44 H 1.09008 * 109.46723 * 179.97438 * 25 24 23 45 45 H 1.08992 * 109.47083 * 300.00077 * 25 24 23 46 46 H 1.09003 * 109.47612 * 59.99816 * 26 24 23 47 47 H 1.09008 * 109.47458 * 179.97438 * 26 24 23 48 48 H 1.09001 * 109.47599 * 299.99397 * 26 24 23 49 49 H 1.08997 * 109.47682 * 60.00269 * 27 24 23 50 50 H 1.09005 * 109.47157 * 180.02562 * 27 24 23 51 51 H 1.08999 * 109.47696 * 299.99853 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2936 2.3743 -0.0057 5 6 1.9230 3.6057 -0.0003 6 6 1.1023 4.8696 -0.0012 7 8 0.2783 4.9017 -1.1683 8 14 2.2371 6.3470 -0.0016 9 1 3.0943 6.3125 -1.2138 10 1 1.4284 7.5925 -0.0019 11 1 3.0935 6.3137 1.2112 12 6 3.3031 3.6798 0.0001 13 6 4.0606 2.5229 0.0000 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1475 -0.0005 16 6 5.6007 0.3005 -0.0005 17 6 6.2523 -1.0583 -0.0006 18 8 5.5673 -2.0593 -0.0001 19 7 7.5960 -1.1614 -0.0012 20 6 8.2294 -2.4824 -0.0018 21 6 9.7507 -2.3187 -0.0017 22 6 10.3870 -3.6460 -0.0017 23 6 10.8946 -4.7046 -0.0043 24 14 11.7160 -6.4179 -0.0099 25 6 11.3562 -7.2843 1.5996 26 6 11.0397 -7.4262 -1.4228 27 6 13.5577 -6.2228 -0.2120 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2150 2.3193 -0.0105 32 1 0.4732 4.8950 0.8885 33 1 0.7723 4.8817 -1.9993 34 1 3.7909 4.6433 0.0001 35 1 5.1389 2.5835 -0.0001 36 1 5.9069 0.8506 -0.8904 37 1 5.9071 0.8499 0.8896 38 1 8.1439 -0.3609 -0.0012 39 1 7.9235 -3.0324 0.8882 40 1 7.9229 -3.0319 -0.8918 41 1 10.0569 -1.7685 -0.8914 42 1 10.0569 -1.7693 0.8885 43 1 10.2787 -7.3986 1.7178 44 1 11.8272 -8.2674 1.5961 45 1 11.7520 -6.6943 2.4262 46 1 11.2502 -6.9193 -2.3646 47 1 11.5113 -8.4090 -1.4264 48 1 9.9621 -7.5405 -1.3047 49 1 13.9535 -5.6328 0.6147 50 1 14.0290 -7.2057 -0.2157 51 1 13.7683 -5.7158 -1.1536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11968232_60476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:55:26 Heat of formation + Delta-G solvation = -113.703065 kcal Electronic energy + Delta-G solvation = -28657.593187 eV Core-core repulsion = 24454.672975 eV Total energy + Delta-G solvation = -4202.920212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.84487 -40.91724 -39.38807 -38.89267 -37.09191 -36.85464 -34.44252 -32.13494 -31.52422 -30.99235 -29.48478 -29.07941 -28.42014 -28.30375 -28.28921 -26.20847 -24.65657 -23.45696 -22.56471 -21.82409 -19.85069 -18.74794 -18.52876 -18.17008 -17.83736 -17.63987 -17.09533 -16.87031 -16.83547 -16.30414 -16.08413 -15.98209 -15.84048 -15.36209 -15.13480 -14.97298 -14.61526 -14.47710 -14.12565 -13.92212 -13.89188 -13.80420 -13.62630 -13.54943 -13.53205 -13.22597 -13.16058 -13.10645 -13.00086 -12.64950 -12.56381 -12.19550 -12.16473 -12.04133 -12.02193 -11.99481 -11.58681 -11.52127 -11.38453 -11.12036 -10.58467 -10.55735 -10.41969 -10.33924 -9.79606 -8.93557 0.15078 0.24660 1.20339 1.26813 1.37217 1.47330 1.50750 1.55465 1.55840 1.78481 1.95330 2.30072 2.38965 2.44567 2.49789 2.54147 2.59064 3.46485 3.50111 3.69478 3.83058 3.85265 3.91793 3.97901 4.00741 4.08008 4.08684 4.13925 4.25369 4.32508 4.36141 4.44934 4.59690 4.64913 4.67598 4.80832 4.81441 4.82364 4.83069 4.85394 4.87742 4.88066 4.91201 4.98311 5.08501 5.17530 5.34224 5.56560 5.56982 5.65544 5.67298 5.94047 6.33327 6.51206 6.71142 6.71214 7.05325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.079 3.921 4 C -0.148 4.148 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.987 3.013 9 H -0.246 1.246 10 H -0.279 1.279 11 H -0.251 1.251 12 C -0.124 4.124 13 C -0.160 4.160 14 C 0.083 3.917 15 O -0.315 6.315 16 C 0.037 3.963 17 C 0.511 3.489 18 O -0.574 6.574 19 N -0.707 5.707 20 C 0.130 3.870 21 C -0.023 4.023 22 C -0.216 4.216 23 C -0.430 4.430 24 Si 1.195 2.805 25 C -0.464 4.464 26 C -0.465 4.465 27 C -0.458 4.458 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.123 0.877 33 H 0.389 0.611 34 H 0.146 0.854 35 H 0.174 0.826 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.425 0.575 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.184 4.547 -0.151 7.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.167 4.167 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.810 3.190 9 H -0.169 1.169 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.038 3.962 15 O -0.229 6.229 16 C -0.041 4.041 17 C 0.297 3.703 18 O -0.453 6.453 19 N -0.363 5.363 20 C 0.006 3.994 21 C -0.059 4.059 22 C -0.216 4.216 23 C -0.462 4.462 24 Si 1.377 2.623 25 C -0.571 4.571 26 C -0.572 4.572 27 C -0.566 4.566 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.238 0.762 34 H 0.164 0.836 35 H 0.191 0.809 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.105 0.895 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.723 4.287 0.289 7.157 hybrid contribution -0.242 0.074 -0.330 0.416 sum 5.481 4.362 -0.041 7.005 Atomic orbital electron populations 1.23306 0.76667 1.05229 1.02278 1.86192 1.23146 1.26616 1.89046 1.18680 0.89810 0.85734 1.02438 1.21028 1.00746 0.90234 1.04665 1.20226 0.94173 0.95297 1.02088 1.25099 1.00666 1.01292 0.92030 1.86479 1.36552 1.96890 1.16195 0.85162 0.76999 0.75162 0.81658 1.16937 1.20456 1.17497 1.21013 0.92896 0.98956 1.01309 1.21334 1.02158 0.89419 1.04916 1.18580 0.88315 0.86378 1.02972 1.86221 1.18161 1.29109 1.89368 1.22752 0.79426 0.94719 1.07207 1.20633 0.82839 0.91053 0.75736 1.90783 1.64176 1.40353 1.49952 1.45561 1.05370 1.10203 1.75148 1.21133 0.91949 0.84480 1.01883 1.18947 0.91062 0.90069 1.05860 1.24191 1.00039 0.97004 1.00411 1.37150 1.01399 1.06852 1.00808 0.76231 0.64175 0.55877 0.65977 1.26255 1.05203 1.08761 1.16900 1.26268 1.06772 1.10025 1.14134 1.26176 1.19850 1.05633 1.04919 0.87173 0.91586 0.91556 0.83505 0.85963 0.76186 0.83617 0.80912 0.85256 0.85294 0.73589 0.92537 0.92521 0.86951 0.86971 0.91630 0.89489 0.91143 0.91212 0.89480 0.91658 0.91072 0.89503 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.34 -3.86 10.28 -79.61 -0.82 -4.68 16 3 C 0.08 0.67 6.70 22.57 0.15 0.82 16 4 C -0.15 -0.55 8.59 22.35 0.19 -0.36 16 5 C -0.12 -0.05 5.39 -19.86 -0.11 -0.16 16 6 C -0.08 0.17 2.82 71.24 0.20 0.37 16 7 O -0.55 0.24 12.76 -148.98 -1.90 -1.66 16 8 Si 0.99 -3.44 25.06 68.60 1.72 -1.72 16 9 H -0.25 1.06 7.11 99.48 0.71 1.76 16 10 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 11 H -0.25 0.83 7.11 99.48 0.71 1.54 16 12 C -0.12 0.21 8.66 22.27 0.19 0.40 16 13 C -0.16 0.20 9.04 22.35 0.20 0.41 16 14 C 0.08 0.53 6.70 22.57 0.15 0.68 16 15 O -0.31 -3.00 9.46 -67.08 -0.63 -3.63 16 16 C 0.04 -0.06 5.22 71.23 0.37 0.32 16 17 C 0.51 2.61 7.91 87.66 0.69 3.30 16 18 O -0.57 -10.43 16.50 15.99 0.26 -10.16 16 19 N -0.71 1.92 5.56 -463.07 -2.57 -0.66 16 20 C 0.13 0.19 5.63 86.38 0.49 0.67 16 21 C -0.02 0.06 5.82 28.79 0.17 0.23 16 22 C -0.22 -0.93 13.34 31.13 0.42 -0.51 16 23 C -0.43 -1.47 12.15 74.32 0.90 -0.57 16 24 Si 1.20 -5.40 14.26 68.60 0.98 -4.42 16 25 C -0.46 1.41 8.65 113.37 0.98 2.39 16 26 C -0.46 1.31 8.65 113.37 0.98 2.29 16 27 C -0.46 2.03 8.65 113.37 0.98 3.01 16 28 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.07 0.00 7.65 -2.39 -0.02 -0.02 16 30 H 0.07 -0.01 7.68 -2.38 -0.02 -0.03 16 31 H 0.15 0.24 6.30 -2.91 -0.02 0.22 16 32 H 0.12 -0.41 7.96 -2.39 -0.02 -0.42 16 33 H 0.39 -2.61 8.70 -74.06 -0.64 -3.25 16 34 H 0.15 -0.89 4.86 -2.91 -0.01 -0.90 16 35 H 0.17 -1.63 6.30 -2.91 -0.02 -1.65 16 36 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 37 H 0.13 -1.14 7.66 -2.39 -0.02 -1.16 16 38 H 0.43 -5.10 8.47 -92.70 -0.79 -5.88 16 39 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.11 -0.76 8.14 -2.39 -0.02 -0.77 16 42 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 44 H 0.09 -0.44 7.96 -2.38 -0.02 -0.45 16 45 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 46 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 47 H 0.09 -0.42 7.96 -2.38 -0.02 -0.44 16 48 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 49 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 50 H 0.09 -0.53 7.96 -2.38 -0.02 -0.55 16 51 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 Total: 0.00 -31.93 434.56 5.39 -26.54 By element: Atomic # 1 Polarization: -14.34 SS G_CDS: 0.28 Total: -14.06 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 8.08 Total: 14.45 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: -2.57 Total: -0.66 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -3.09 Total: -20.13 kcal Atomic # 14 Polarization: -8.84 SS G_CDS: 2.70 Total: -6.14 kcal Total: -31.93 5.39 -26.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11968232_60476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.160 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds