Wall clock time and date at job start Sat Mar 6 2021 19:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47262 * 2 1 4 4 C 1.86306 * 109.47119 * 239.99605 * 2 1 3 5 5 C 1.90002 * 109.46899 * 119.99764 * 2 1 3 6 6 C 3.07406 * 109.46967 * 119.99784 * 2 1 3 7 7 C 4.54600 * 109.46930 * 119.99817 * 2 1 3 8 8 C 1.53002 * 109.47033 * 163.67789 * 7 6 5 9 9 N 1.46500 * 109.47119 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00253 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99517 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00401 * 180.02562 * 10 9 8 13 13 N 1.46497 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.36838 * 125.05962 * 264.97485 * 13 12 10 15 15 C 1.34235 * 109.93800 * 180.02562 * 14 13 12 16 16 C 1.50692 * 126.50345 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47457 * 104.96913 * 16 15 14 18 18 Si 1.86305 * 109.47067 * 344.97200 * 16 15 14 19 19 H 1.48501 * 109.47060 * 60.00119 * 18 16 15 20 20 H 1.48503 * 109.47195 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47092 * 299.99928 * 18 16 15 22 22 C 1.46498 * 106.99657 * 359.77818 * 15 14 13 23 23 C 1.39590 * 134.02707 * 179.57964 * 22 15 14 24 24 C 1.36668 * 119.76122 * 180.37212 * 23 22 15 25 25 C 1.38785 * 120.52395 * 0.26101 * 24 23 22 26 26 C 1.37786 * 120.67117 * 359.97001 * 25 24 23 27 27 C 1.37687 * 125.06449 * 85.00068 * 13 12 10 28 28 H 1.09002 * 109.47367 * 300.00320 * 1 2 3 29 29 H 1.09008 * 109.47149 * 59.99885 * 1 2 3 30 30 H 1.09000 * 109.47570 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46742 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46705 * 299.99503 * 3 2 1 33 33 H 1.08996 * 109.47318 * 60.00014 * 3 2 1 34 34 H 1.08996 * 109.46877 * 300.00301 * 4 2 1 35 35 H 1.08995 * 109.46944 * 60.00428 * 4 2 1 36 36 H 1.08997 * 109.46914 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47373 * 43.68148 * 7 6 5 38 38 H 1.08996 * 109.47263 * 283.67663 * 7 6 5 39 39 H 1.08991 * 109.47332 * 60.00179 * 8 7 6 40 40 H 1.08996 * 109.46993 * 300.00040 * 8 7 6 41 41 H 0.96997 * 120.00212 * 0.02562 * 9 8 7 42 42 H 1.09005 * 109.47029 * 59.99929 * 12 10 9 43 43 H 1.09002 * 109.46874 * 300.00441 * 12 10 9 44 44 H 1.07997 * 125.03385 * 0.04175 * 14 13 12 45 45 H 1.08998 * 109.47154 * 224.97146 * 16 15 14 46 46 H 0.96700 * 114.00375 * 300.00408 * 17 16 15 47 47 H 1.08002 * 120.12275 * 0.65785 * 23 22 15 48 48 H 1.07995 * 119.73473 * 180.27672 * 24 23 22 49 49 H 1.08005 * 119.66135 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.10859 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8784 -1.5211 5 6 2.4962 -0.8956 1.5514 6 6 2.8876 -1.4490 2.5100 7 6 3.3781 -2.1429 3.7119 8 6 4.8696 -1.8544 3.8943 9 7 5.3578 -2.5445 5.0908 10 6 6.6517 -2.4345 5.4515 11 8 7.4118 -1.7639 4.7856 12 6 7.1540 -3.1448 6.6820 13 7 8.5820 -2.8685 6.8566 14 6 9.5979 -3.6707 6.4130 15 6 10.7830 -3.1294 6.7360 16 6 12.1432 -3.7003 6.4278 17 8 12.7369 -2.9645 5.3563 18 14 11.9686 -5.4876 5.9319 19 1 11.1062 -5.5850 4.7269 20 1 13.3089 -6.0500 5.6275 21 1 11.3516 -6.2523 7.0453 22 6 10.5034 -1.8753 7.4398 23 6 11.3033 -0.8878 8.0174 24 6 10.7198 0.1895 8.6230 25 6 9.3379 0.3071 8.6730 26 6 8.5296 -0.6583 8.1135 27 6 9.1019 -1.7631 7.4920 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7563 -0.0005 32 1 2.1207 2.2702 -0.8901 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5210 35 1 2.1207 -0.3645 -2.4111 36 1 3.5739 -0.8787 -1.5209 37 1 3.2270 -3.2165 3.5989 38 1 2.8302 -1.7888 4.5850 39 1 5.0209 -0.7810 4.0074 40 1 5.4176 -2.2085 3.0212 41 1 4.7499 -3.0812 5.6231 42 1 7.0024 -4.2184 6.5691 43 1 6.6062 -2.7904 7.5551 44 1 9.4658 -4.6015 5.8815 45 1 12.7762 -3.6287 7.3122 46 1 12.2265 -2.9843 4.5352 47 1 12.3794 -0.9725 7.9819 48 1 11.3391 0.9555 9.0658 49 1 8.8916 1.1642 9.1555 50 1 7.4552 -0.5574 8.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11968232_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:04:10 Heat of formation + Delta-G solvation = -7.425768 kcal Electronic energy + Delta-G solvation = -27965.505523 eV Core-core repulsion = 24082.680033 eV Total energy + Delta-G solvation = -3882.825490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.47678 -40.68009 -38.00234 -37.59644 -36.95479 -34.49660 -33.95919 -31.57377 -30.58640 -30.11949 -29.63069 -28.73860 -28.48310 -28.46985 -25.89355 -24.50721 -23.55385 -22.57407 -21.79638 -20.59383 -18.92479 -18.53917 -17.94682 -17.74820 -17.33041 -16.85590 -16.68243 -16.32400 -16.00413 -15.75760 -15.48277 -15.37971 -14.79253 -14.61124 -14.59707 -14.46069 -14.32158 -14.27881 -14.06792 -14.06109 -13.74325 -13.61473 -13.47113 -13.36915 -13.35835 -13.15847 -13.02397 -12.59632 -12.43738 -12.29630 -12.14777 -12.09698 -11.83257 -11.59858 -11.57684 -11.48243 -11.16113 -10.69730 -10.65521 -10.41464 -10.33165 -10.19580 -9.01697 -8.52348 0.28407 0.80159 1.23759 1.27433 1.36148 1.38866 1.44171 1.47332 1.56589 1.62309 1.72368 1.97040 2.06979 2.34403 2.35239 2.38068 3.12672 3.41765 3.47384 3.65144 3.75379 3.79217 3.83320 3.86000 3.93043 3.99608 4.09858 4.31790 4.32592 4.38285 4.60725 4.64615 4.64971 4.68905 4.69495 4.70357 4.71468 4.72254 4.73619 4.76587 4.81552 4.91398 5.00518 5.12181 5.26923 5.38632 5.47829 5.49403 5.65702 5.81785 5.87489 5.91256 6.10436 6.29583 6.37150 6.72074 6.76127 6.95945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.141 2.859 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.406 4.406 6 C -0.184 4.184 7 C -0.029 4.029 8 C 0.125 3.875 9 N -0.731 5.731 10 C 0.490 3.510 11 O -0.511 6.511 12 C 0.092 3.908 13 N -0.466 5.466 14 C 0.059 3.941 15 C -0.196 4.196 16 C -0.043 4.043 17 O -0.540 6.540 18 Si 0.945 3.055 19 H -0.254 1.254 20 H -0.250 1.250 21 H -0.250 1.250 22 C -0.084 4.084 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.096 4.096 26 C -0.129 4.129 27 C 0.108 3.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.403 0.597 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.165 0.835 45 H 0.114 0.886 46 H 0.375 0.625 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -2.671 0.448 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.327 2.673 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.441 4.441 6 C -0.184 4.184 7 C -0.066 4.066 8 C 0.002 3.998 9 N -0.385 5.385 10 C 0.274 3.726 11 O -0.385 6.385 12 C -0.034 4.034 13 N -0.150 5.150 14 C -0.066 4.066 15 C -0.203 4.203 16 C -0.154 4.154 17 O -0.345 6.345 18 Si 0.767 3.233 19 H -0.178 1.178 20 H -0.174 1.174 21 H -0.174 1.174 22 C -0.088 4.088 23 C -0.082 4.082 24 C -0.165 4.165 25 C -0.115 4.115 26 C -0.149 4.149 27 C 0.004 3.996 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.238 0.762 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.182 0.818 45 H 0.132 0.868 46 H 0.222 0.778 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.539 -3.080 0.220 6.341 hybrid contribution -0.918 -0.084 0.218 0.947 sum -6.457 -3.163 0.438 7.204 Atomic orbital electron populations 1.26117 1.20097 1.04865 1.04901 0.76991 0.65914 0.64716 0.59648 1.26126 1.06729 1.18351 1.04885 1.26122 1.06701 1.08371 1.14858 1.35991 1.00808 1.02152 1.05163 1.23390 0.99820 0.98892 0.96322 1.18882 0.94364 1.00109 0.93209 1.21278 0.92924 0.98047 0.87587 1.45920 1.10341 1.52885 1.29318 1.21028 0.82273 0.82259 0.87043 1.90826 1.55238 1.39021 1.53367 1.21577 0.81244 1.02682 0.97907 1.43182 1.03988 1.19007 1.48785 1.21547 0.86402 0.97096 1.01507 1.20644 0.94314 0.97240 1.08127 1.24254 0.91833 1.05797 0.93509 1.86502 1.50263 1.75380 1.22331 0.85835 0.81438 0.75104 0.80905 1.17809 1.17377 1.17367 1.18915 0.91510 0.95967 1.02440 1.20322 0.99495 0.92488 0.95932 1.20677 0.94773 0.98778 1.02258 1.20825 0.93617 0.98026 0.99073 1.19949 0.99245 0.93391 1.02321 1.18177 0.92658 0.89753 0.99014 0.90965 0.90437 0.90979 0.90919 0.90442 0.90963 0.90987 0.90437 0.90936 0.88974 0.88959 0.90752 0.90768 0.76247 0.85926 0.86295 0.81757 0.86847 0.77835 0.85747 0.85887 0.85739 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.98 8.65 101.05 0.87 1.85 16 2 Si 1.14 -2.98 14.26 -169.99 -2.42 -5.41 16 3 C -0.45 0.79 8.65 101.05 0.87 1.66 16 4 C -0.45 0.86 8.65 101.05 0.87 1.73 16 5 C -0.41 -0.41 12.15 29.55 0.36 -0.05 16 6 C -0.18 -0.27 13.34 -37.13 -0.50 -0.77 16 7 C -0.03 0.05 5.82 -29.52 -0.17 -0.12 16 8 C 0.13 -0.05 5.63 -4.04 -0.02 -0.07 16 9 N -0.73 1.61 5.56 -60.30 -0.33 1.28 16 10 C 0.49 0.29 7.90 -10.99 -0.09 0.20 16 11 O -0.51 -3.02 16.42 5.56 0.09 -2.93 16 12 C 0.09 -0.19 6.48 -5.20 -0.03 -0.22 16 13 N -0.47 -0.85 2.27 -115.71 -0.26 -1.11 16 14 C 0.06 0.10 9.89 -16.73 -0.17 -0.07 16 15 C -0.20 -0.55 5.57 -102.71 -0.57 -1.12 16 16 C -0.04 -0.06 3.06 36.00 0.11 0.05 16 17 O -0.54 -1.35 12.88 -35.23 -0.45 -1.80 16 18 Si 0.94 0.00 26.08 -169.99 -4.43 -4.43 16 19 H -0.25 0.02 7.03 56.52 0.40 0.42 16 20 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 21 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 22 C -0.08 -0.37 6.35 -105.13 -0.67 -1.04 16 23 C -0.06 -0.24 10.05 -39.64 -0.40 -0.64 16 24 C -0.15 -0.40 9.97 -39.95 -0.40 -0.80 16 25 C -0.10 -0.23 10.01 -39.54 -0.40 -0.63 16 26 C -0.13 -0.37 10.00 -39.43 -0.39 -0.76 16 27 C 0.11 0.41 6.80 -83.99 -0.57 -0.16 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.08 -0.21 7.96 -51.92 -0.41 -0.63 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 38 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 39 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.40 -2.35 8.47 -40.82 -0.35 -2.70 16 42 H 0.12 -0.66 8.12 -51.93 -0.42 -1.08 16 43 H 0.12 -0.52 8.14 -51.93 -0.42 -0.94 16 44 H 0.17 -0.18 6.29 -52.49 -0.33 -0.51 16 45 H 0.11 0.07 7.96 -51.93 -0.41 -0.34 16 46 H 0.37 -0.09 8.70 45.56 0.40 0.31 16 47 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 48 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 49 H 0.12 0.03 8.06 -52.48 -0.42 -0.39 16 50 H 0.11 0.11 8.06 -52.49 -0.42 -0.32 16 LS Contribution 431.85 15.07 6.51 6.51 Total: 0.00 -11.48 431.85 -10.03 -21.52 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -7.44 Total: -12.67 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.28 Total: -0.95 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -0.60 Total: 0.17 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.36 Total: -4.74 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: -6.86 Total: -9.84 kcal Total LS contribution 6.51 Total: 6.51 kcal Total: -11.48 -10.03 -21.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11968232_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.090 kcal (2) G-P(sol) polarization free energy of solvation -11.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds