Wall clock time and date at job start Sat Mar 6 2021 20:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34241 * 117.00014 * 2 1 4 4 O 1.20821 * 119.99391 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00039 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47269 * 34.99529 * 5 3 2 7 7 C 1.34777 * 119.99884 * 300.00021 * 6 5 3 8 8 O 1.21289 * 120.00181 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.47033 * 300.00454 * 9 7 6 11 11 O 1.42899 * 109.47448 * 180.02562 * 9 7 6 12 12 C 1.35899 * 116.99760 * 204.95021 * 11 9 7 13 13 C 1.38736 * 120.05341 * 174.27154 * 12 11 9 14 14 C 1.38149 * 119.94327 * 179.74167 * 13 12 11 15 15 C 1.38271 * 120.05286 * 0.51354 * 14 13 12 16 16 C 1.50704 * 119.94066 * 179.74665 * 15 14 13 17 17 O 1.42902 * 109.46610 * 245.02188 * 16 15 14 18 18 Si 1.86297 * 109.47198 * 5.01808 * 16 15 14 19 19 C 1.38262 * 120.11381 * 359.76168 * 15 14 13 20 20 C 1.38149 * 120.05438 * 359.97438 * 19 15 14 21 21 C 1.53007 * 109.46696 * 274.99649 * 5 3 2 22 22 C 1.52996 * 109.46752 * 180.02562 * 21 5 3 23 23 C 1.52995 * 109.47458 * 60.00027 * 22 21 5 24 24 H 1.08999 * 109.47681 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.47308 * 59.99379 * 23 22 21 26 26 C 1.53007 * 109.47117 * 299.99750 * 23 22 21 27 27 C 1.52998 * 109.47072 * 154.99551 * 5 3 2 28 28 H 1.09000 * 109.47385 * 300.00553 * 1 2 3 29 29 H 1.09002 * 109.47352 * 60.00239 * 1 2 3 30 30 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 31 31 H 0.96997 * 120.00131 * 120.00423 * 6 5 3 32 32 H 1.09005 * 109.47049 * 59.99865 * 9 7 6 33 33 H 1.09004 * 109.47635 * 59.99326 * 10 9 7 34 34 H 1.08996 * 109.47613 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.46721 * 299.99611 * 10 9 7 36 36 H 1.07999 * 120.02507 * 359.97438 * 13 12 11 37 37 H 1.07991 * 119.97161 * 180.23474 * 14 13 12 38 38 H 1.08999 * 109.46909 * 125.02084 * 16 15 14 39 39 H 0.96691 * 114.00376 * 59.99832 * 17 16 15 40 40 H 1.48497 * 109.99986 * 58.68357 * 18 16 15 41 41 H 1.48502 * 109.99757 * 180.02562 * 18 16 15 42 42 H 1.07995 * 119.97292 * 180.02562 * 19 15 14 43 43 H 1.07998 * 120.02621 * 179.97438 * 20 19 15 44 44 H 1.09000 * 109.47194 * 60.00116 * 21 5 3 45 45 H 1.08996 * 109.46967 * 300.00134 * 21 5 3 46 46 H 1.08996 * 109.47362 * 299.99731 * 22 21 5 47 47 H 1.09006 * 109.47095 * 179.97438 * 22 21 5 48 48 H 1.09006 * 109.46755 * 60.00568 * 25 23 22 49 49 H 1.09000 * 109.47381 * 180.02562 * 25 23 22 50 50 H 1.08997 * 109.47459 * 300.00227 * 25 23 22 51 51 H 1.09000 * 109.47194 * 179.97438 * 26 23 22 52 52 H 1.08996 * 109.46967 * 299.99845 * 26 23 22 53 53 H 1.09006 * 109.46883 * 60.00136 * 27 5 3 54 54 H 1.08997 * 109.47054 * 299.99630 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1129 0.1708 -0.7931 7 6 3.8538 -1.1042 -0.4412 8 8 3.1678 -1.3373 0.5315 9 6 4.4166 -2.2401 -1.2561 10 6 3.9008 -2.1412 -2.6931 11 8 4.0045 -3.4845 -0.6871 12 6 4.7910 -4.5653 -0.9318 13 6 4.5178 -5.7775 -0.3147 14 6 5.3157 -6.8761 -0.5693 15 6 6.3922 -6.7656 -1.4300 16 6 7.2644 -7.9643 -1.7014 17 8 8.5796 -7.7199 -1.1989 18 14 6.5447 -9.4602 -0.8558 19 6 6.6700 -5.5573 -2.0418 20 6 5.8719 -4.4570 -1.7948 21 6 4.0827 1.1759 1.4363 22 6 5.6105 1.2566 1.4358 23 6 6.0507 2.5892 0.8264 24 1 7.1392 2.6465 0.8256 25 6 5.4793 3.7420 1.6542 26 6 5.5343 2.6882 -0.6105 27 6 4.0069 2.6073 -0.6102 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.6613 0.3572 -1.5712 32 1 5.5051 -2.1829 -1.2560 33 1 4.2148 -1.1920 -3.1274 34 1 4.3081 -2.9625 -3.2827 35 1 2.8123 -2.1984 -2.6932 36 1 3.6798 -5.8630 0.3611 37 1 5.1012 -7.8209 -0.0921 38 1 7.3131 -8.1424 -2.7756 39 1 8.6123 -7.5529 -0.2471 40 1 5.1649 -9.7062 -1.3465 41 1 7.3960 -10.6490 -1.1153 42 1 7.5111 -5.4736 -2.7140 43 1 6.0895 -3.5133 -2.2726 44 1 3.7688 0.2267 1.8706 45 1 3.6760 1.9974 2.0260 46 1 6.0176 0.4353 0.8460 47 1 5.9784 1.1865 2.4595 48 1 5.8472 3.6715 2.6779 49 1 5.7925 4.6914 1.2198 50 1 4.3908 3.6846 1.6545 51 1 5.8475 3.6378 -1.0444 52 1 5.9414 1.8670 -1.2002 53 1 3.6003 3.4289 -0.0204 54 1 3.6391 2.6778 -1.6338 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_10157680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:37 Heat of formation + Delta-G solvation = -149.492059 kcal Electronic energy + Delta-G solvation = -37108.027117 eV Core-core repulsion = 32398.466651 eV Total energy + Delta-G solvation = -4709.560466 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.61632 -41.54328 -40.57145 -39.68158 -38.81040 -37.53761 -37.11387 -35.58860 -33.64145 -32.08273 -31.98470 -31.75230 -30.94130 -29.09216 -27.76071 -26.67202 -25.53056 -24.50651 -24.09366 -23.88445 -22.62459 -21.76924 -21.23120 -19.75078 -19.34160 -18.86577 -18.58418 -18.14128 -17.97804 -17.47141 -16.93095 -16.79444 -16.62192 -16.33342 -16.00867 -15.89188 -15.61311 -15.49448 -15.24757 -14.98849 -14.88808 -14.69511 -14.53363 -14.29019 -14.22093 -14.04222 -13.78448 -13.68169 -13.64981 -13.39247 -13.28473 -13.24328 -13.09813 -12.84319 -12.70716 -12.60258 -12.16179 -12.14672 -12.10591 -12.00186 -11.85478 -11.83965 -11.66123 -11.37937 -11.24013 -11.13439 -10.65894 -10.38948 -10.28167 -10.01510 -9.19065 -4.98595 0.27650 0.35273 0.88141 1.34686 1.45260 1.49923 1.64842 1.74353 1.97604 2.45987 2.68108 3.22391 3.49400 3.52824 3.59181 3.61649 3.69920 3.75952 3.85663 3.89655 3.95669 3.99110 4.01279 4.07205 4.14885 4.19396 4.25353 4.29480 4.37716 4.40307 4.46085 4.53368 4.56593 4.58435 4.59988 4.65684 4.69515 4.79713 4.84985 4.87784 5.01917 5.02763 5.06401 5.10138 5.10526 5.17305 5.21610 5.26710 5.29121 5.31847 5.35234 5.40113 5.51245 5.55098 5.70352 6.27515 6.44250 6.57063 6.80825 7.14564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.206 3.794 6 N -0.702 5.702 7 C 0.517 3.483 8 O -0.517 6.517 9 C 0.068 3.932 10 C -0.174 4.174 11 O -0.307 6.307 12 C 0.123 3.877 13 C -0.159 4.159 14 C -0.076 4.076 15 C -0.162 4.162 16 C -0.063 4.063 17 O -0.556 6.556 18 Si 0.764 3.236 19 C -0.058 4.058 20 C -0.208 4.208 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.092 4.092 24 H 0.088 0.912 25 C -0.157 4.157 26 C -0.108 4.108 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.422 0.578 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.395 0.605 40 H -0.289 1.289 41 H -0.301 1.301 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.085 0.915 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 1.877 -2.259 6.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.292 3.708 4 O -0.424 6.424 5 C 0.118 3.882 6 N -0.361 5.361 7 C 0.302 3.698 8 O -0.390 6.390 9 C 0.009 3.991 10 C -0.232 4.232 11 O -0.220 6.220 12 C 0.078 3.922 13 C -0.178 4.178 14 C -0.093 4.093 15 C -0.163 4.163 16 C -0.174 4.174 17 O -0.364 6.364 18 Si 0.672 3.328 19 C -0.076 4.076 20 C -0.226 4.226 21 C -0.168 4.168 22 C -0.139 4.139 23 C -0.110 4.110 24 H 0.107 0.893 25 C -0.214 4.214 26 C -0.146 4.146 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.262 0.738 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.125 0.875 39 H 0.245 0.755 40 H -0.216 1.216 41 H -0.229 1.229 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.106 0.894 52 H 0.104 0.896 53 H 0.104 0.896 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.130 1.103 -2.151 4.785 hybrid contribution -0.554 0.471 -0.718 1.022 sum 3.575 1.574 -2.869 4.847 Atomic orbital electron populations 1.23429 0.76548 1.04747 1.02130 1.86890 1.23413 1.32043 1.82379 1.24818 0.93143 0.81515 0.71322 1.90663 1.67568 1.37317 1.46815 1.20187 0.83252 0.89722 0.95082 1.45736 1.54737 1.03309 1.32287 1.20403 0.80370 0.83918 0.85101 1.90766 1.36352 1.84039 1.27893 1.22337 1.01761 0.81418 0.93576 1.22376 1.02707 1.05600 0.92475 1.86191 1.48591 1.15473 1.71786 1.19239 0.90742 0.87367 0.94901 1.20586 1.03012 0.90882 1.03312 1.20962 0.93725 0.98067 0.96571 1.20320 0.98283 0.96781 1.00919 1.24985 0.86353 1.02729 1.03302 1.86458 1.25726 1.93994 1.30181 0.93830 0.75411 0.73941 0.89663 1.20987 0.97977 0.91298 0.97312 1.21518 0.97096 1.01446 1.02543 1.21954 0.98644 1.03350 0.92821 1.21468 0.92273 0.98247 1.01891 1.21158 1.01014 0.93959 0.94900 0.89349 1.21984 1.00840 0.98502 1.00059 1.21616 0.91967 1.04212 0.96771 1.21812 0.98634 0.92516 1.02056 0.92462 0.91808 0.86677 0.73768 0.85566 0.87494 0.89784 0.92324 0.84682 0.83446 0.87526 0.75540 1.21590 1.22876 0.84450 0.82823 0.91199 0.90797 0.90951 0.91294 0.92844 0.91942 0.93225 0.89415 0.89552 0.89628 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.33 16 2 O -0.33 -3.12 6.73 -43.76 -0.29 -3.41 16 3 C 0.45 3.62 6.71 71.24 0.48 4.10 16 4 O -0.53 -6.77 15.84 21.98 0.35 -6.42 16 5 C 0.21 0.08 0.63 2.86 0.00 0.08 16 6 N -0.70 2.91 3.93 -426.31 -1.67 1.24 16 7 C 0.52 0.74 6.17 87.66 0.54 1.28 16 8 O -0.52 -5.49 11.75 26.90 0.32 -5.18 16 9 C 0.07 -0.19 2.65 29.85 0.08 -0.11 16 10 C -0.17 1.13 9.07 71.98 0.65 1.79 16 11 O -0.31 -1.39 9.33 -73.37 -0.68 -2.08 16 12 C 0.12 0.28 6.60 22.51 0.15 0.43 16 13 C -0.16 -0.34 9.99 22.37 0.22 -0.12 16 14 C -0.08 0.05 8.66 22.26 0.19 0.24 16 15 C -0.16 0.11 5.35 -19.85 -0.11 0.00 16 16 C -0.06 0.08 2.80 71.24 0.20 0.28 16 17 O -0.56 0.41 12.83 -148.98 -1.91 -1.50 16 18 Si 0.76 -1.44 29.80 68.60 2.04 0.61 16 19 C -0.06 0.07 9.68 22.25 0.22 0.28 16 20 C -0.21 0.39 8.24 22.37 0.18 0.58 16 21 C -0.13 -0.22 4.23 30.60 0.13 -0.09 16 22 C -0.10 0.34 5.29 30.59 0.16 0.50 16 23 C -0.09 0.57 3.19 -10.79 -0.03 0.53 16 24 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 25 C -0.16 0.57 8.50 71.98 0.61 1.18 16 26 C -0.11 0.93 5.28 30.58 0.16 1.09 16 27 C -0.11 0.42 4.03 30.58 0.12 0.54 16 28 H 0.06 0.34 8.13 -2.39 -0.02 0.32 16 29 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.42 -4.88 6.74 -92.71 -0.62 -5.50 16 32 H 0.13 -1.08 6.31 -2.38 -0.02 -1.09 16 33 H 0.11 -1.34 7.56 -2.39 -0.02 -1.36 16 34 H 0.08 -0.60 6.91 -2.39 -0.02 -0.62 16 35 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.15 -0.71 4.90 -2.92 -0.01 -0.73 16 38 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 39 H 0.39 -3.33 8.70 -74.06 -0.64 -3.97 16 40 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 41 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 42 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 43 H 0.15 -1.15 5.43 -2.91 -0.02 -1.17 16 44 H 0.07 0.51 6.17 -2.39 -0.01 0.50 16 45 H 0.07 0.22 6.43 -2.39 -0.02 0.21 16 46 H 0.07 -0.34 7.60 -2.39 -0.02 -0.36 16 47 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 48 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 49 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.05 -0.05 4.81 -2.39 -0.01 -0.06 16 51 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 52 H 0.09 -1.09 6.86 -2.39 -0.02 -1.10 16 53 H 0.09 -0.03 6.16 -2.38 -0.01 -0.04 16 54 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -24.84 412.11 3.02 -21.82 By element: Atomic # 1 Polarization: -18.70 SS G_CDS: -0.29 Total: -18.99 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.16 Total: 13.91 kcal Atomic # 7 Polarization: 2.91 SS G_CDS: -1.67 Total: 1.24 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -2.23 Total: -18.59 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.04 Total: 0.61 kcal Total: -24.84 3.02 -21.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_10157680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.671 kcal (2) G-P(sol) polarization free energy of solvation -24.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds