Wall clock time and date at job start Sat Mar 6 2021 20:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 116.99883 * 2 1 4 4 O 1.20822 * 120.00197 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99879 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47361 * 34.99871 * 5 3 2 7 7 C 1.34777 * 119.99852 * 300.00660 * 6 5 3 8 8 O 1.21691 * 120.00254 * 354.52736 * 7 6 5 9 9 C 1.46684 * 119.99877 * 174.53366 * 7 6 5 10 10 C 1.37875 * 126.22904 * 4.99028 * 9 7 6 11 11 C 1.39840 * 107.08245 * 180.02562 * 10 9 7 12 12 C 1.35449 * 107.86424 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.56392 * 180.02562 * 12 11 10 14 14 O 1.42907 * 109.47209 * 149.97804 * 13 12 11 15 15 Si 1.86297 * 109.47021 * 29.97930 * 13 12 11 16 16 N 1.35539 * 108.87382 * 359.73565 * 12 11 10 17 17 C 1.46494 * 125.68076 * 180.30330 * 16 12 11 18 18 C 1.53001 * 109.46892 * 275.00156 * 5 3 2 19 19 C 1.52996 * 109.47070 * 179.97438 * 18 5 3 20 20 C 1.53005 * 109.47246 * 60.00438 * 19 18 5 21 21 H 1.08993 * 109.47077 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47069 * 59.99472 * 20 19 18 23 23 C 1.53001 * 109.46406 * 299.99973 * 20 19 18 24 24 C 1.52996 * 109.47396 * 60.00119 * 23 20 19 25 25 H 1.09003 * 109.47122 * 299.99372 * 1 2 3 26 26 H 1.09001 * 109.47241 * 59.99736 * 1 2 3 27 27 H 1.08999 * 109.47134 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99673 * 119.99766 * 6 5 3 29 29 H 1.07996 * 126.46039 * 359.95886 * 10 9 7 30 30 H 1.08000 * 126.06674 * 179.97438 * 11 10 9 31 31 H 1.09000 * 109.47248 * 269.97780 * 13 12 11 32 32 H 0.96703 * 113.99865 * 300.00290 * 14 13 12 33 33 H 1.48503 * 110.00091 * 58.68171 * 15 13 12 34 34 H 1.48501 * 110.00161 * 180.02562 * 15 13 12 35 35 H 1.09003 * 109.47067 * 275.30700 * 17 16 12 36 36 H 1.08999 * 109.47556 * 35.30436 * 17 16 12 37 37 H 1.09004 * 109.47318 * 155.30818 * 17 16 12 38 38 H 1.08999 * 109.47315 * 59.99826 * 18 5 3 39 39 H 1.09001 * 109.46987 * 299.99977 * 18 5 3 40 40 H 1.08991 * 109.47296 * 299.99898 * 19 18 5 41 41 H 1.09008 * 109.47143 * 179.97438 * 19 18 5 42 42 H 1.08998 * 109.47312 * 60.00635 * 22 20 19 43 43 H 1.08999 * 109.46626 * 180.02562 * 22 20 19 44 44 H 1.09001 * 109.47501 * 300.00512 * 22 20 19 45 45 H 1.08999 * 109.46992 * 180.02562 * 23 20 19 46 46 H 1.09001 * 109.47509 * 299.99830 * 23 20 19 47 47 H 1.09001 * 109.47288 * 59.99900 * 24 23 20 48 48 H 1.09008 * 109.47143 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1129 0.1707 -0.7932 7 6 3.8538 -1.1043 -0.4414 8 8 3.2505 -1.3406 0.5887 9 6 4.2989 -2.2070 -1.3001 10 6 5.0702 -2.0940 -2.4374 11 6 5.2545 -3.3863 -2.9388 12 6 4.6076 -4.2471 -2.1171 13 6 4.5479 -5.7433 -2.2865 14 8 4.4355 -6.3639 -1.0042 15 14 6.1006 -6.3352 -3.1289 16 7 4.0280 -3.5437 -1.1139 17 6 3.2412 -4.1111 -0.0161 18 6 4.0827 1.1756 1.4362 19 6 5.6106 1.2550 1.4356 20 6 6.0519 2.5872 0.8260 21 1 7.1403 2.6436 0.8252 22 6 5.4815 3.7407 1.6537 23 6 5.5354 2.6864 -0.6108 24 6 4.0075 2.6070 -0.6102 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6613 0.3573 -1.5713 29 1 5.4578 -1.1797 -2.8616 30 1 5.8135 -3.6511 -3.8241 31 1 3.6821 -6.0059 -2.8944 32 1 5.1734 -6.1733 -0.4090 33 1 7.2905 -5.9554 -2.3258 34 1 6.0539 -7.8093 -3.3025 35 1 2.2083 -4.2418 -0.3392 36 1 3.6580 -5.0773 0.2681 37 1 3.2716 -3.4364 0.8394 38 1 3.7688 0.2264 1.8705 39 1 3.6760 1.9971 2.0260 40 1 6.0169 0.4334 0.8460 41 1 5.9785 1.1848 2.4593 42 1 5.8493 3.6700 2.6773 43 1 5.7955 4.6897 1.2191 44 1 4.3929 3.6841 1.6542 45 1 5.8501 3.6352 -1.0453 46 1 5.9417 1.8646 -1.2005 47 1 3.6012 3.4287 -0.0205 48 1 3.6395 2.6780 -1.6338 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_10803936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:47 Heat of formation + Delta-G solvation = -90.351469 kcal Electronic energy + Delta-G solvation = -32018.285297 eV Core-core repulsion = 27848.309399 eV Total energy + Delta-G solvation = -4169.975897 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.78227 -42.20165 -40.48644 -39.23390 -37.91844 -37.55882 -35.62685 -33.78070 -32.47666 -31.96745 -30.77541 -29.11772 -27.80043 -27.47276 -26.68853 -24.52517 -23.94525 -23.34342 -21.88373 -21.25432 -20.53572 -19.55504 -18.91364 -18.77357 -18.26738 -17.94495 -17.48389 -16.86530 -16.71392 -16.52355 -16.02073 -15.86743 -15.48723 -15.34549 -15.06470 -14.89654 -14.76771 -14.56293 -14.42498 -14.22230 -14.02651 -13.82420 -13.73901 -13.65028 -13.32706 -13.16350 -13.10673 -12.88888 -12.70884 -12.60685 -12.34682 -12.12016 -11.92409 -11.88298 -11.87202 -11.41373 -11.25699 -11.18238 -10.98981 -10.62371 -10.27813 -9.68640 -9.05189 -4.85623 0.42501 0.88462 1.20925 1.55763 1.59312 1.75009 1.82834 2.02278 2.31695 2.44412 3.16889 3.25085 3.51727 3.60326 3.61352 3.76426 3.98886 4.02200 4.03653 4.07382 4.11929 4.16681 4.25601 4.34009 4.40344 4.40974 4.46603 4.52005 4.52961 4.58560 4.60489 4.74627 4.80645 4.84387 4.88405 5.03850 5.06837 5.10478 5.14098 5.19098 5.23500 5.25644 5.28096 5.35254 5.39891 5.55011 5.76762 6.04767 6.18007 6.31650 6.46339 6.54551 7.17476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.452 3.548 4 O -0.532 6.532 5 C 0.208 3.792 6 N -0.698 5.698 7 C 0.592 3.408 8 O -0.543 6.543 9 C -0.077 4.077 10 C -0.130 4.130 11 C -0.201 4.201 12 C 0.004 3.996 13 C -0.066 4.066 14 O -0.547 6.547 15 Si 0.814 3.186 16 N -0.404 5.404 17 C 0.058 3.942 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.092 4.092 21 H 0.087 0.913 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.420 0.580 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.129 0.871 32 H 0.386 0.614 33 H -0.289 1.289 34 H -0.299 1.299 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 0.285 -5.070 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C 0.294 3.706 4 O -0.421 6.421 5 C 0.120 3.880 6 N -0.354 5.354 7 C 0.381 3.619 8 O -0.421 6.421 9 C -0.190 4.190 10 C -0.156 4.156 11 C -0.224 4.224 12 C -0.114 4.114 13 C -0.173 4.173 14 O -0.355 6.355 15 Si 0.717 3.283 16 N -0.077 5.077 17 C -0.082 4.082 18 C -0.167 4.167 19 C -0.138 4.138 20 C -0.110 4.110 21 H 0.105 0.895 22 C -0.213 4.213 23 C -0.146 4.146 24 C -0.151 4.151 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.260 0.740 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.147 0.853 32 H 0.236 0.764 33 H -0.216 1.216 34 H -0.226 1.226 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.352 -0.444 -4.209 6.070 hybrid contribution -0.744 0.088 1.347 1.541 sum 3.608 -0.357 -2.862 4.619 Atomic orbital electron populations 1.23429 0.76269 1.04767 1.02225 1.86801 1.23629 1.32342 1.82515 1.24761 0.93091 0.81454 0.71257 1.90661 1.67512 1.37206 1.46760 1.20189 0.83183 0.89548 0.95095 1.45479 1.54481 1.03228 1.32225 1.17088 0.78183 0.82417 0.84214 1.90749 1.41459 1.84115 1.25818 1.20151 1.12182 0.84118 1.02551 1.21715 1.00057 0.99642 0.94227 1.20984 1.06560 0.91794 1.03058 1.21401 1.02152 0.95221 0.92628 1.25229 1.15651 0.86599 0.89865 1.86564 1.49571 1.74147 1.25226 0.93314 0.70786 0.77281 0.86945 1.43864 1.38183 1.04949 1.20714 1.22491 0.95528 1.01381 0.88842 1.21975 0.98400 1.03548 0.92741 1.21442 0.92547 0.98148 1.01640 1.21151 1.00941 0.93980 0.94932 0.89504 1.21976 1.00879 0.98429 0.99993 1.21614 0.92023 1.04160 0.96767 1.21826 0.98600 0.92565 1.02069 0.92253 0.91894 0.86620 0.73999 0.80855 0.80039 0.85309 0.76424 1.21587 1.22645 0.91616 0.87357 0.89213 0.90783 0.90775 0.91508 0.91414 0.92843 0.91828 0.93132 0.89237 0.89886 0.89388 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 113.37 1.20 1.34 16 2 O -0.34 -3.36 6.94 -43.77 -0.30 -3.67 16 3 C 0.45 4.12 6.71 71.24 0.48 4.59 16 4 O -0.53 -7.12 15.85 21.98 0.35 -6.78 16 5 C 0.21 0.46 0.63 2.86 0.00 0.46 16 6 N -0.70 0.39 4.01 -430.25 -1.73 -1.33 16 7 C 0.59 2.83 6.59 86.45 0.57 3.40 16 8 O -0.54 -5.69 9.99 18.56 0.19 -5.50 16 9 C -0.08 -0.24 6.89 40.35 0.28 0.04 16 10 C -0.13 0.30 10.36 22.57 0.23 0.53 16 11 C -0.20 0.64 9.37 22.01 0.21 0.84 16 12 C 0.00 0.00 6.15 41.34 0.25 0.25 16 13 C -0.07 0.16 2.99 71.24 0.21 0.38 16 14 O -0.55 0.04 10.10 -148.98 -1.50 -1.46 16 15 Si 0.81 -3.88 31.10 68.60 2.13 -1.74 16 16 N -0.40 -1.45 3.16 -519.70 -1.64 -3.09 16 17 C 0.06 0.20 10.30 127.77 1.32 1.52 16 18 C -0.13 -0.40 4.22 30.59 0.13 -0.27 16 19 C -0.10 0.12 5.29 30.59 0.16 0.29 16 20 C -0.09 0.40 3.20 -10.79 -0.03 0.37 16 21 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 22 C -0.16 0.40 8.50 71.98 0.61 1.02 16 23 C -0.11 0.72 5.28 30.59 0.16 0.88 16 24 C -0.11 0.22 4.04 30.59 0.12 0.35 16 25 H 0.06 0.34 8.13 -2.39 -0.02 0.32 16 26 H 0.06 0.28 8.13 -2.39 -0.02 0.27 16 27 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.42 -2.76 6.22 -92.71 -0.58 -3.33 16 29 H 0.17 -1.58 7.45 -2.91 -0.02 -1.60 16 30 H 0.18 -1.81 6.85 -2.91 -0.02 -1.83 16 31 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.39 -1.77 8.30 -74.06 -0.61 -2.38 16 33 H -0.29 -0.20 7.11 99.48 0.71 0.51 16 34 H -0.30 -0.76 7.11 99.48 0.71 -0.05 16 35 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.11 0.07 5.21 -2.39 -0.01 0.06 16 37 H 0.09 0.59 5.96 -2.38 -0.01 0.58 16 38 H 0.07 0.62 5.99 -2.39 -0.01 0.60 16 39 H 0.07 0.29 6.43 -2.39 -0.02 0.27 16 40 H 0.07 -0.07 7.60 -2.39 -0.02 -0.09 16 41 H 0.07 -0.05 8.14 -2.38 -0.02 -0.06 16 42 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.05 -0.01 4.81 -2.39 -0.01 -0.03 16 45 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H 0.08 -0.80 6.86 -2.39 -0.02 -0.82 16 47 H 0.09 0.06 6.16 -2.39 -0.01 0.05 16 48 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 Total: 0.00 -20.44 363.64 3.24 -17.20 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: -0.15 Total: -9.61 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.90 Total: 15.98 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -3.37 Total: -4.42 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.28 Total: -17.41 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.13 Total: -1.74 kcal Total: -20.44 3.24 -17.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_10803936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.149 kcal (2) G-P(sol) polarization free energy of solvation -20.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds