Wall clock time and date at job start Sat Mar 6 2021 20:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99863 * 2 1 4 4 O 1.20825 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00170 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47044 * 324.99957 * 5 3 2 7 7 C 1.34776 * 119.99938 * 59.99998 * 6 5 3 8 8 O 1.21697 * 120.00323 * 0.02562 * 7 6 5 9 9 C 1.46680 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.37873 * 126.23326 * 180.30939 * 9 7 6 11 11 C 1.50697 * 126.45820 * 0.02562 * 10 9 7 12 12 C 1.39839 * 107.08392 * 180.14641 * 10 9 7 13 13 C 1.50696 * 126.06398 * 179.87877 * 12 10 9 14 14 O 1.42897 * 109.47487 * 67.81828 * 13 12 10 15 15 Si 1.86296 * 109.47255 * 307.81063 * 13 12 10 16 16 C 1.35455 * 107.86399 * 359.61239 * 12 10 9 17 17 C 1.50697 * 125.56064 * 180.22073 * 16 12 10 18 18 N 1.35529 * 108.87128 * 0.24193 * 16 12 10 19 19 C 1.53003 * 109.47376 * 205.00408 * 5 3 2 20 20 C 1.53000 * 109.47096 * 180.02562 * 19 5 3 21 21 C 1.52998 * 109.47529 * 59.99642 * 20 19 5 22 22 H 1.08996 * 109.47315 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47017 * 59.99758 * 21 20 19 24 24 C 1.53003 * 109.47224 * 300.00280 * 21 20 19 25 25 C 1.52998 * 109.47372 * 84.99975 * 5 3 2 26 26 H 1.08996 * 109.47489 * 59.99659 * 1 2 3 27 27 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47263 * 299.99331 * 1 2 3 29 29 H 0.96999 * 120.00422 * 239.99573 * 6 5 3 30 30 H 1.08998 * 109.47446 * 270.17232 * 11 10 9 31 31 H 1.09003 * 109.47366 * 30.17379 * 11 10 9 32 32 H 1.08999 * 109.47285 * 150.17108 * 11 10 9 33 33 H 1.09005 * 109.47145 * 187.81529 * 13 12 10 34 34 H 0.96709 * 113.99869 * 299.99751 * 14 13 12 35 35 H 1.48501 * 109.99952 * 174.81974 * 15 13 12 36 36 H 1.48497 * 110.00216 * 296.14293 * 15 13 12 37 37 H 1.08999 * 109.47361 * 84.70084 * 17 16 12 38 38 H 1.09001 * 109.47048 * 204.69968 * 17 16 12 39 39 H 1.08995 * 109.47409 * 324.70166 * 17 16 12 40 40 H 0.96999 * 125.68047 * 180.02562 * 18 16 12 41 41 H 1.09002 * 109.46888 * 299.99529 * 19 5 3 42 42 H 1.08994 * 109.47292 * 59.99442 * 19 5 3 43 43 H 1.09000 * 109.46800 * 180.02562 * 20 19 5 44 44 H 1.09002 * 109.46851 * 299.99531 * 20 19 5 45 45 H 1.09009 * 109.46779 * 60.00109 * 23 21 20 46 46 H 1.09001 * 109.47300 * 180.02562 * 23 21 20 47 47 H 1.08997 * 109.47202 * 300.00655 * 23 21 20 48 48 H 1.08994 * 109.47292 * 180.02562 * 24 21 20 49 49 H 1.08999 * 109.46438 * 299.99720 * 24 21 20 50 50 H 1.08998 * 109.47074 * 299.99913 * 25 5 3 51 51 H 1.09002 * 109.47145 * 60.00316 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 4.1134 0.1705 0.7912 7 6 3.8541 -1.1043 0.4390 8 8 3.1658 -1.3380 -0.5370 9 6 4.4025 -2.2102 1.2315 10 6 4.2249 -3.5552 0.9858 11 6 3.4339 -4.1624 -0.1441 12 6 4.9149 -4.2498 1.9843 13 6 5.0016 -5.7476 2.1249 14 8 5.7637 -6.2844 1.0418 15 14 3.2864 -6.4743 2.0975 16 6 5.4962 -3.3372 2.7993 17 6 6.3421 -3.6528 4.0059 18 7 5.1925 -2.0942 2.3527 19 6 4.0073 2.6071 0.6092 20 6 5.5352 2.6874 0.6080 21 6 6.0501 2.5892 -0.8294 22 1 7.1385 2.6469 -0.8302 23 6 5.4780 3.7426 -1.6559 24 6 5.6089 1.2570 -1.4392 25 6 4.0816 1.1764 -1.4378 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 4.6625 0.3567 1.5689 30 1 2.3997 -4.3021 0.1704 31 1 3.4645 -3.4976 -1.0074 32 1 3.8654 -5.1266 -0.4126 33 1 5.4866 -5.9965 3.0688 34 1 5.3900 -6.1009 0.1689 35 1 3.3629 -7.9573 2.1095 36 1 2.5134 -5.9961 3.2718 37 1 7.3710 -3.8291 3.6922 38 1 6.3128 -2.8128 4.6999 39 1 5.9545 -4.5446 4.4982 40 1 5.4838 -1.2614 2.7558 41 1 3.6002 3.4288 0.0201 42 1 3.6402 2.6773 1.6331 43 1 5.8494 3.6362 1.0429 44 1 5.9427 1.8656 1.1969 45 1 5.7923 4.6917 -1.2215 46 1 5.8444 3.6724 -2.6801 47 1 4.3895 3.6854 -1.6551 48 1 5.9761 1.1868 -2.4630 49 1 6.0165 0.4353 -0.8503 50 1 3.7674 0.2274 -1.8721 51 1 3.6745 1.9982 -2.0269 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:54 Heat of formation + Delta-G solvation = -108.288769 kcal Electronic energy + Delta-G solvation = -34265.575207 eV Core-core repulsion = 29939.283871 eV Total energy + Delta-G solvation = -4326.291336 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.80651 -42.19645 -40.43358 -39.21915 -37.71901 -37.49319 -35.59210 -33.68400 -33.15162 -32.01156 -31.66860 -29.18516 -29.05745 -27.81917 -27.25382 -26.29706 -24.48109 -23.94164 -22.80223 -21.52343 -20.85849 -20.23599 -19.50024 -19.32188 -18.80305 -17.97182 -17.63890 -17.42210 -16.87843 -16.61392 -16.42828 -15.89169 -15.74252 -15.46336 -15.21380 -15.02367 -14.80869 -14.72830 -14.50283 -14.23454 -14.13681 -13.96428 -13.87024 -13.75373 -13.65800 -13.53889 -13.33019 -13.11870 -13.04728 -13.02567 -12.71094 -12.67745 -12.57086 -12.24137 -12.12684 -11.99510 -11.84118 -11.79425 -11.40446 -11.27248 -11.15054 -10.73686 -10.50618 -10.27309 -9.49638 -8.93095 -4.90487 0.46504 0.94159 1.27201 1.55639 1.65987 1.77085 1.93888 1.99736 2.14495 2.41775 3.26271 3.52498 3.62370 3.70052 3.81149 3.88010 3.97282 4.02133 4.05780 4.06678 4.19331 4.20930 4.23869 4.25122 4.38639 4.39320 4.45783 4.52832 4.55945 4.63954 4.66595 4.73085 4.77904 4.82409 4.86605 4.98077 5.01455 5.03145 5.05501 5.07988 5.09953 5.14095 5.25132 5.27516 5.31256 5.34074 5.37335 5.43831 5.53273 5.76388 5.95815 6.37674 6.56101 6.60684 6.81238 7.19067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.328 6.328 3 C 0.450 3.550 4 O -0.536 6.536 5 C 0.207 3.793 6 N -0.713 5.713 7 C 0.591 3.409 8 O -0.511 6.511 9 C -0.069 4.069 10 C -0.068 4.068 11 C -0.100 4.100 12 C -0.228 4.228 13 C -0.025 4.025 14 O -0.557 6.557 15 Si 0.739 3.261 16 C 0.081 3.919 17 C -0.096 4.096 18 N -0.525 5.525 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.092 4.092 22 H 0.085 0.915 23 C -0.156 4.156 24 C -0.100 4.100 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.411 0.589 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.387 0.613 35 H -0.290 1.290 36 H -0.295 1.295 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.428 0.572 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 1.874 2.471 5.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.243 6.243 3 C 0.293 3.707 4 O -0.426 6.426 5 C 0.118 3.882 6 N -0.369 5.369 7 C 0.380 3.620 8 O -0.386 6.386 9 C -0.181 4.181 10 C -0.077 4.077 11 C -0.156 4.156 12 C -0.234 4.234 13 C -0.137 4.137 14 O -0.365 6.365 15 Si 0.646 3.354 16 C -0.038 4.038 17 C -0.154 4.154 18 N -0.123 5.123 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.110 4.110 22 H 0.103 0.897 23 C -0.213 4.213 24 C -0.138 4.138 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.248 0.752 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.237 0.763 35 H -0.218 1.218 36 H -0.222 1.222 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.268 0.732 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.192 1.464 2.677 4.416 hybrid contribution 0.146 0.814 0.834 1.174 sum 3.338 2.278 3.511 5.353 Atomic orbital electron populations 1.23450 0.76482 1.05024 1.01915 1.86887 1.23402 1.31708 1.82256 1.24734 0.92998 0.81638 0.71314 1.90665 1.67558 1.37401 1.46931 1.20145 0.83477 0.89395 0.95141 1.45772 1.54888 1.04128 1.32082 1.17042 0.79605 0.81427 0.83916 1.90826 1.37132 1.83528 1.27107 1.19951 1.08319 0.94522 0.95293 1.19955 0.99388 0.90648 0.97712 1.20452 0.99164 1.00654 0.95344 1.19525 1.07902 0.95533 1.00430 1.24238 1.06170 0.90708 0.92582 1.86466 1.53885 1.78364 1.17755 0.93869 0.77046 0.76460 0.88014 1.20635 1.00621 0.83562 0.99012 1.20574 0.98617 1.03788 0.92386 1.41777 1.39831 1.08270 1.22436 1.21811 0.98414 0.92994 1.01892 1.21597 0.92177 1.03826 0.96881 1.21149 1.00838 0.94259 0.94797 0.89678 1.21977 1.00936 0.98306 1.00066 1.21430 0.92701 0.97854 1.01784 1.21935 0.98221 1.03758 0.92607 0.92388 0.86117 0.92344 0.75164 0.90010 0.90426 0.89691 0.87162 0.76313 1.21776 1.22169 0.89496 0.89383 0.89705 0.73161 0.89416 0.90192 0.89506 0.90258 0.92019 0.92692 0.93037 0.91161 0.91542 0.90480 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.56 113.37 1.20 1.29 16 2 O -0.33 -2.63 6.72 -43.64 -0.29 -2.93 16 3 C 0.45 3.44 6.71 71.23 0.48 3.92 16 4 O -0.54 -6.66 15.84 21.97 0.35 -6.31 16 5 C 0.21 0.14 0.63 2.85 0.00 0.14 16 6 N -0.71 1.91 4.03 -430.26 -1.73 0.18 16 7 C 0.59 1.25 6.72 86.45 0.58 1.83 16 8 O -0.51 -3.84 10.05 19.10 0.19 -3.65 16 9 C -0.07 -0.04 7.06 40.35 0.28 0.24 16 10 C -0.07 -0.10 5.84 -19.56 -0.11 -0.22 16 11 C -0.10 0.10 7.97 71.24 0.57 0.67 16 12 C -0.23 -0.18 4.71 -20.12 -0.09 -0.28 16 13 C -0.03 -0.02 2.86 71.23 0.20 0.18 16 14 O -0.56 -1.24 12.88 -148.98 -1.92 -3.16 16 15 Si 0.74 1.08 29.59 68.60 2.03 3.11 16 16 C 0.08 -0.17 7.13 41.34 0.29 0.12 16 17 C -0.10 0.66 10.00 71.24 0.71 1.38 16 18 N -0.52 2.38 5.99 -171.93 -1.03 1.35 16 19 C -0.11 0.33 4.04 30.60 0.12 0.45 16 20 C -0.11 0.80 5.28 30.59 0.16 0.96 16 21 C -0.09 0.49 3.20 -10.79 -0.03 0.46 16 22 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 23 C -0.16 0.52 8.50 71.98 0.61 1.13 16 24 C -0.10 0.28 5.29 30.58 0.16 0.44 16 25 C -0.13 -0.16 4.22 30.58 0.13 -0.04 16 26 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 27 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 29 H 0.41 -3.56 6.45 -92.71 -0.60 -4.16 16 30 H 0.08 -0.16 7.66 -2.39 -0.02 -0.18 16 31 H 0.08 0.18 6.50 -2.39 -0.02 0.16 16 32 H 0.08 -0.52 5.29 -2.39 -0.01 -0.53 16 33 H 0.11 0.01 6.65 -2.38 -0.02 0.00 16 34 H 0.39 -1.58 6.88 -74.05 -0.51 -2.09 16 35 H -0.29 -2.19 7.11 99.48 0.71 -1.48 16 36 H -0.29 -2.20 7.11 99.48 0.71 -1.49 16 37 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.09 -0.93 8.14 -2.39 -0.02 -0.94 16 39 H 0.08 -0.57 7.23 -2.39 -0.02 -0.59 16 40 H 0.43 -4.77 8.19 -92.71 -0.76 -5.53 16 41 H 0.09 0.01 6.16 -2.39 -0.01 -0.01 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 44 H 0.08 -0.85 6.86 -2.39 -0.02 -0.87 16 45 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.05 -0.06 4.81 -2.39 -0.01 -0.07 16 48 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.07 -0.18 7.61 -2.39 -0.02 -0.20 16 50 H 0.08 0.45 6.16 -2.39 -0.01 0.43 16 51 H 0.07 0.18 6.43 -2.39 -0.02 0.16 16 Total: 0.00 -20.72 382.42 2.02 -18.70 By element: Atomic # 1 Polarization: -19.15 SS G_CDS: -0.84 Total: -19.98 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.26 Total: 12.69 kcal Atomic # 7 Polarization: 4.29 SS G_CDS: -2.76 Total: 1.52 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.67 Total: -16.04 kcal Atomic # 14 Polarization: 1.08 SS G_CDS: 2.03 Total: 3.11 kcal Total: -20.72 2.02 -18.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.593 kcal (2) G-P(sol) polarization free energy of solvation -20.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds