Wall clock time and date at job start Sat Mar 6 2021 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99937 * 2 1 4 4 O 1.20826 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00086 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46991 * 324.99861 * 5 3 2 7 7 C 1.34772 * 120.00277 * 60.00197 * 6 5 3 8 8 O 1.21626 * 119.99546 * 0.02562 * 7 6 5 9 9 C 1.47296 * 120.00716 * 180.02562 * 7 6 5 10 10 C 1.40288 * 120.14281 * 179.97438 * 9 7 6 11 11 O 1.35666 * 120.11605 * 359.97438 * 10 9 7 12 12 C 1.42905 * 116.99697 * 179.97438 * 11 10 9 13 13 C 1.38439 * 119.76549 * 180.02562 * 10 9 7 14 14 C 1.38688 * 120.02939 * 0.02562 * 13 10 9 15 15 O 1.35716 * 119.86291 * 180.28234 * 14 13 10 16 16 C 1.42907 * 117.00042 * 359.72613 * 15 14 13 17 17 C 1.39185 * 120.27269 * 0.02562 * 14 13 10 18 18 C 1.50695 * 119.87686 * 179.97438 * 17 14 13 19 19 O 1.42899 * 109.47613 * 75.00175 * 18 17 14 20 20 Si 1.86298 * 109.46993 * 195.00330 * 18 17 14 21 21 C 1.37533 * 120.24126 * 359.97438 * 17 14 13 22 22 C 1.53004 * 109.46750 * 205.00261 * 5 3 2 23 23 C 1.53002 * 109.46728 * 179.97438 * 22 5 3 24 24 C 1.52998 * 109.47563 * 59.99758 * 23 22 5 25 25 H 1.08993 * 109.47634 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.46985 * 59.99797 * 24 23 22 27 27 C 1.53004 * 109.46970 * 300.00089 * 24 23 22 28 28 C 1.52990 * 109.47413 * 84.99963 * 5 3 2 29 29 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46922 * 300.00040 * 1 2 3 31 31 H 1.08995 * 109.47402 * 59.99858 * 1 2 3 32 32 H 0.97006 * 119.99974 * 240.00641 * 6 5 3 33 33 H 1.09002 * 109.46712 * 60.00718 * 12 11 10 34 34 H 1.09003 * 109.46691 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47480 * 300.00132 * 12 11 10 36 36 H 1.08000 * 119.98606 * 180.02562 * 13 10 9 37 37 H 1.08999 * 109.46731 * 300.00462 * 16 15 14 38 38 H 1.09001 * 109.46936 * 59.99969 * 16 15 14 39 39 H 1.08993 * 109.46948 * 180.02562 * 16 15 14 40 40 H 1.09006 * 109.47246 * 314.99946 * 18 17 14 41 41 H 0.96708 * 113.99974 * 300.00235 * 19 18 17 42 42 H 1.48496 * 110.00426 * 60.00254 * 20 18 17 43 43 H 1.48508 * 110.00149 * 181.32079 * 20 18 17 44 44 H 1.08007 * 120.02014 * 179.97438 * 21 17 14 45 45 H 1.08999 * 109.46765 * 299.99448 * 22 5 3 46 46 H 1.08996 * 109.47181 * 59.99764 * 22 5 3 47 47 H 1.08998 * 109.47009 * 179.97438 * 23 22 5 48 48 H 1.08999 * 109.47122 * 299.99321 * 23 22 5 49 49 H 1.08998 * 109.47204 * 60.00385 * 26 24 23 50 50 H 1.09003 * 109.47328 * 180.02562 * 26 24 23 51 51 H 1.08998 * 109.47304 * 300.00183 * 26 24 23 52 52 H 1.08998 * 109.47357 * 179.97438 * 27 24 23 53 53 H 1.08999 * 109.46768 * 299.99857 * 27 24 23 54 54 H 1.08999 * 109.47199 * 300.00437 * 28 5 3 55 55 H 1.08999 * 109.47362 * 59.99780 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1135 0.1705 0.7912 7 6 3.8542 -1.1043 0.4391 8 8 3.1663 -1.3378 -0.5364 9 6 4.4039 -2.2148 1.2355 10 6 4.1354 -3.5429 0.8719 11 8 3.3678 -3.8093 -0.2146 12 6 3.1374 -5.1852 -0.5245 13 6 4.6555 -4.5806 1.6263 14 6 5.4386 -4.3062 2.7375 15 8 5.9515 -5.3262 3.4713 16 6 5.6390 -6.6537 3.0445 17 6 5.7050 -2.9891 3.1002 18 6 6.5565 -2.7011 4.3097 19 8 7.9271 -2.9619 4.0005 20 14 6.3590 -0.9138 4.7968 21 6 5.1940 -1.9496 2.3587 22 6 4.0073 2.6071 0.6092 23 6 5.5353 2.6869 0.6092 24 6 6.0512 2.5881 -0.8278 25 1 7.1396 2.6454 -0.8278 26 6 5.4803 3.7416 -1.6551 27 6 5.6101 1.2560 -1.4375 28 6 4.0817 1.1764 -1.4377 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 4.6624 0.3567 1.5691 33 1 2.6351 -5.6672 0.3142 34 1 2.5110 -5.2573 -1.4137 35 1 4.0904 -5.6803 -0.7107 36 1 4.4514 -5.6044 1.3493 37 1 4.5584 -6.7956 3.0607 38 1 6.0103 -6.8063 2.0311 39 1 6.1096 -7.3715 3.7162 40 1 6.2426 -3.3396 5.1355 41 1 8.1041 -3.8757 3.7379 42 1 4.9380 -0.6297 5.1211 43 1 7.2182 -0.6090 5.9692 44 1 5.4026 -0.9289 2.6436 45 1 3.6002 3.4288 0.0200 46 1 3.6402 2.6773 1.6331 47 1 5.8495 3.6361 1.0432 48 1 5.9420 1.8652 1.1987 49 1 5.7945 4.6906 -1.2207 50 1 5.8474 3.6710 -2.6789 51 1 4.3918 3.6847 -1.6551 52 1 5.9773 1.1857 -2.4614 53 1 6.0169 0.4343 -0.8481 54 1 3.7674 0.2274 -1.8721 55 1 3.6745 1.9981 -2.0269 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12297780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:58 Heat of formation + Delta-G solvation = -184.699262 kcal Electronic energy + Delta-G solvation = -41155.572222 eV Core-core repulsion = 36125.802864 eV Total energy + Delta-G solvation = -5029.769357 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.54672 -41.88393 -40.52163 -40.04450 -39.15117 -38.34475 -37.45455 -36.95418 -35.38350 -32.63960 -32.19289 -31.86947 -30.88106 -29.02039 -28.97181 -28.14576 -27.64224 -26.06940 -24.88293 -24.27732 -23.79363 -22.95131 -21.82845 -21.21171 -20.07739 -19.44948 -18.80489 -18.73726 -18.46414 -17.90627 -17.68288 -17.38971 -17.19029 -17.05997 -16.60994 -16.54095 -16.32815 -15.97663 -15.75769 -15.52575 -15.37235 -15.29266 -14.95674 -14.89911 -14.46235 -14.31670 -14.17472 -14.09924 -13.90565 -13.69588 -13.60639 -13.42304 -13.34649 -13.19962 -13.01434 -12.66346 -12.61757 -12.54900 -12.52070 -12.45802 -12.17550 -12.00431 -11.77806 -11.76395 -11.62458 -11.33699 -11.29117 -11.19374 -11.12787 -11.02978 -10.58092 -10.13968 -9.90458 -9.16460 -4.95096 -0.23453 0.11063 0.99626 1.38138 1.62096 1.68254 1.88639 1.99407 2.06323 2.07410 2.20223 2.68279 3.34222 3.47073 3.55387 3.62371 3.71568 3.74269 3.76442 3.95860 4.07690 4.09435 4.11355 4.17088 4.19385 4.21164 4.23893 4.25328 4.28053 4.29053 4.31097 4.34977 4.39290 4.50751 4.56571 4.60326 4.65754 4.68020 4.68462 4.78222 4.89001 4.92739 4.94855 4.97825 5.02956 5.13390 5.16565 5.21553 5.28314 5.31170 5.36501 5.38431 5.45919 5.50229 5.64315 6.00416 6.29369 6.54892 6.63560 6.65761 7.34405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.331 6.331 3 C 0.450 3.550 4 O -0.536 6.536 5 C 0.205 3.795 6 N -0.712 5.712 7 C 0.564 3.436 8 O -0.512 6.512 9 C -0.217 4.217 10 C 0.218 3.782 11 O -0.298 6.298 12 C 0.011 3.989 13 C -0.307 4.307 14 C 0.203 3.797 15 O -0.319 6.319 16 C 0.014 3.986 17 C -0.199 4.199 18 C -0.074 4.074 19 O -0.545 6.545 20 Si 0.801 3.199 21 C 0.005 3.995 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.091 4.091 25 H 0.089 0.911 26 C -0.156 4.156 27 C -0.102 4.102 28 C -0.126 4.126 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.415 0.585 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.374 0.626 42 H -0.258 1.258 43 H -0.293 1.293 44 H 0.162 0.838 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.049 0.951 52 H 0.067 0.933 53 H 0.071 0.929 54 H 0.070 0.930 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -4.238 1.244 5.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.245 6.245 3 C 0.293 3.707 4 O -0.425 6.425 5 C 0.117 3.883 6 N -0.370 5.370 7 C 0.353 3.647 8 O -0.388 6.388 9 C -0.221 4.221 10 C 0.169 3.831 11 O -0.209 6.209 12 C -0.083 4.083 13 C -0.327 4.327 14 C 0.155 3.845 15 O -0.231 6.231 16 C -0.080 4.080 17 C -0.200 4.200 18 C -0.181 4.181 19 O -0.352 6.352 20 Si 0.702 3.298 21 C -0.013 4.013 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.110 4.110 25 H 0.107 0.893 26 C -0.213 4.213 27 C -0.140 4.140 28 C -0.164 4.164 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.222 0.778 42 H -0.183 1.183 43 H -0.220 1.220 44 H 0.179 0.821 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.086 0.914 53 H 0.089 0.911 54 H 0.089 0.911 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.799 -2.877 1.319 4.225 hybrid contribution -0.829 -2.299 0.365 2.471 sum 1.971 -5.176 1.683 5.789 Atomic orbital electron populations 1.23402 0.76803 1.04609 1.01988 1.86920 1.23198 1.32028 1.82325 1.24849 0.93173 0.81475 0.71184 1.90651 1.67591 1.37292 1.47007 1.20187 0.83230 0.89735 0.95176 1.45820 1.54969 1.03930 1.32275 1.17907 0.79911 0.82497 0.84418 1.90832 1.36678 1.83949 1.27325 1.19130 1.10170 0.91028 1.01762 1.18923 0.86743 0.92308 0.85127 1.86380 1.63743 1.29332 1.41435 1.23440 1.02680 0.79254 1.02910 1.21407 1.09855 1.00684 1.00716 1.18882 0.89212 0.88036 0.88346 1.86033 1.69342 1.15681 1.52044 1.23468 1.02483 0.79259 1.02817 1.19526 1.07404 0.90402 1.02649 1.25434 0.82724 1.15050 0.94912 1.86684 1.23448 1.34677 1.90364 0.92642 0.77973 0.75826 0.83346 1.20841 0.91228 0.98821 0.90404 1.21852 0.98789 0.92563 1.02071 1.21675 0.91902 1.04514 0.96890 1.21150 1.01059 0.93852 0.94907 0.89254 1.21976 1.00829 0.98502 0.99962 1.21479 0.92398 0.98345 1.01730 1.21931 0.98541 1.03273 0.92691 0.86756 0.92094 0.92418 0.74555 0.91302 0.87017 0.91096 0.81944 0.91530 0.91012 0.86032 0.91326 0.77781 1.18297 1.22034 0.82120 0.89484 0.89778 0.89007 0.89357 0.91901 0.92962 0.93244 0.91426 0.91081 0.91148 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 113.37 1.20 1.36 16 2 O -0.33 -3.73 6.72 -43.69 -0.29 -4.02 16 3 C 0.45 4.54 6.71 71.24 0.48 5.02 16 4 O -0.54 -7.62 15.84 21.96 0.35 -7.27 16 5 C 0.21 0.61 0.63 2.86 0.00 0.62 16 6 N -0.71 -0.28 3.98 -429.69 -1.71 -1.99 16 7 C 0.56 3.34 6.69 86.63 0.58 3.92 16 8 O -0.51 -6.41 10.39 26.41 0.27 -6.14 16 9 C -0.22 -0.79 5.89 -20.00 -0.12 -0.91 16 10 C 0.22 0.93 6.69 22.82 0.15 1.08 16 11 O -0.30 -1.81 8.56 -68.86 -0.59 -2.40 16 12 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 13 C -0.31 0.03 8.01 22.43 0.18 0.21 16 14 C 0.20 0.09 6.62 22.61 0.15 0.24 16 15 O -0.32 0.49 9.35 -90.38 -0.84 -0.35 16 16 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 17 C -0.20 -0.09 5.27 -19.80 -0.10 -0.20 16 18 C -0.07 -0.02 2.32 71.23 0.17 0.14 16 19 O -0.55 -0.82 12.65 -148.98 -1.89 -2.70 16 20 Si 0.80 -1.72 30.16 68.60 2.07 0.35 16 21 C 0.01 0.00 8.14 22.50 0.18 0.18 16 22 C -0.12 0.19 4.04 30.60 0.12 0.31 16 23 C -0.11 0.76 5.28 30.59 0.16 0.92 16 24 C -0.09 0.41 3.20 -10.79 -0.03 0.38 16 25 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 26 C -0.16 0.38 8.50 71.98 0.61 0.99 16 27 C -0.10 0.12 5.29 30.61 0.16 0.28 16 28 C -0.13 -0.46 4.23 30.61 0.13 -0.33 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.34 8.13 -2.39 -0.02 0.32 16 31 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 32 H 0.41 -2.54 5.33 -92.70 -0.49 -3.03 16 33 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 34 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 36 H 0.16 -0.83 4.50 -2.91 -0.01 -0.84 16 37 H 0.07 -0.61 7.66 -2.39 -0.02 -0.62 16 38 H 0.07 -0.71 7.64 -2.39 -0.02 -0.73 16 39 H 0.12 -1.33 8.14 -2.39 -0.02 -1.35 16 40 H 0.07 0.08 7.82 -2.38 -0.02 0.06 16 41 H 0.37 -0.80 8.57 -74.05 -0.63 -1.44 16 42 H -0.26 0.06 7.11 99.48 0.71 0.77 16 43 H -0.29 -1.43 7.11 99.48 0.71 -0.73 16 44 H 0.16 -1.15 3.43 -2.91 -0.01 -1.16 16 45 H 0.09 0.09 6.16 -2.39 -0.01 0.08 16 46 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 47 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.09 -0.94 6.86 -2.39 -0.02 -0.95 16 49 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.05 0.00 4.81 -2.39 -0.01 -0.01 16 52 H 0.07 -0.05 8.14 -2.39 -0.02 -0.06 16 53 H 0.07 -0.11 7.60 -2.39 -0.02 -0.12 16 54 H 0.07 0.64 6.16 -2.39 -0.01 0.63 16 55 H 0.07 0.33 6.43 -2.39 -0.02 0.31 16 Total: 0.00 -23.31 417.39 3.48 -19.83 By element: Atomic # 1 Polarization: -11.48 SS G_CDS: -0.14 Total: -11.61 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.24 Total: 16.30 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -1.71 Total: -1.99 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -2.99 Total: -22.88 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.07 Total: 0.35 kcal Total: -23.31 3.48 -19.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12297780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.867 kcal (2) G-P(sol) polarization free energy of solvation -23.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds