Wall clock time and date at job start Sat Mar 6 2021 20:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47430 * 34.99471 * 5 3 2 7 7 C 1.34780 * 120.00096 * 300.00869 * 6 5 3 8 8 O 1.21288 * 119.99951 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00003 * 179.97438 * 7 6 5 10 10 C 1.50704 * 109.46876 * 179.97438 * 9 7 6 11 11 C 1.38241 * 119.99938 * 269.72163 * 10 9 7 12 12 C 1.38227 * 119.99765 * 179.76850 * 11 10 9 13 13 C 1.38235 * 120.00542 * 0.50740 * 12 11 10 14 14 C 1.50696 * 120.00427 * 179.72696 * 13 12 11 15 15 O 1.42897 * 109.47226 * 120.02016 * 14 13 12 16 16 Si 1.86295 * 109.47024 * 0.02562 * 14 13 12 17 17 C 1.38237 * 119.99468 * 359.74566 * 13 12 11 18 18 C 1.38230 * 120.00327 * 0.02562 * 17 13 12 19 19 C 1.53005 * 109.46770 * 274.99933 * 5 3 2 20 20 C 1.53007 * 109.47204 * 180.02562 * 19 5 3 21 21 C 1.52997 * 109.46902 * 59.99672 * 20 19 5 22 22 H 1.09004 * 109.47007 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47325 * 60.00492 * 21 20 19 24 24 C 1.53001 * 109.47286 * 299.99667 * 21 20 19 25 25 C 1.52996 * 109.47482 * 155.00122 * 5 3 2 26 26 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 0.96995 * 120.00152 * 119.99872 * 6 5 3 30 30 H 1.09002 * 109.47104 * 299.98922 * 9 7 6 31 31 H 1.08993 * 109.47880 * 59.99576 * 9 7 6 32 32 H 1.08000 * 119.99514 * 0.02562 * 11 10 9 33 33 H 1.08002 * 119.99932 * 180.23190 * 12 11 10 34 34 H 1.09001 * 109.47068 * 240.02164 * 14 13 12 35 35 H 0.96695 * 114.00164 * 299.99889 * 15 14 13 36 36 H 1.48499 * 110.00107 * 58.68482 * 16 14 13 37 37 H 1.48505 * 109.99892 * 180.02562 * 16 14 13 38 38 H 1.08008 * 119.99711 * 179.97438 * 17 13 12 39 39 H 1.08001 * 119.99957 * 179.97438 * 18 17 13 40 40 H 1.09004 * 109.46769 * 299.99453 * 19 5 3 41 41 H 1.08991 * 109.47381 * 59.99839 * 19 5 3 42 42 H 1.09003 * 109.46828 * 300.00177 * 20 19 5 43 43 H 1.08999 * 109.47150 * 179.97438 * 20 19 5 44 44 H 1.09003 * 109.46757 * 299.99494 * 23 21 20 45 45 H 1.08999 * 109.47152 * 59.99426 * 23 21 20 46 46 H 1.09007 * 109.46800 * 179.97438 * 23 21 20 47 47 H 1.08993 * 109.47708 * 300.00947 * 24 21 20 48 48 H 1.09000 * 109.47091 * 179.97438 * 24 21 20 49 49 H 1.08999 * 109.46979 * 299.99636 * 25 5 3 50 50 H 1.08997 * 109.47375 * 59.99543 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1130 0.1707 -0.7931 7 6 3.8539 -1.1043 -0.4413 8 8 3.1684 -1.3375 0.5318 9 6 4.4157 -2.2401 -1.2569 10 6 3.9822 -3.5524 -0.6560 11 6 4.7663 -4.1661 0.3030 12 6 4.3663 -5.3674 0.8575 13 6 3.1875 -5.9604 0.4456 14 6 2.7545 -7.2732 1.0457 15 8 1.4859 -7.1102 1.6831 16 14 4.0138 -7.8271 2.3018 17 6 2.4060 -5.3493 -0.5171 18 6 2.8036 -4.1456 -1.0683 19 6 4.0827 1.1757 1.4363 20 6 5.6106 1.2565 1.4359 21 6 6.0507 2.5891 0.8265 22 1 7.1392 2.6465 0.8258 23 6 5.4794 3.7419 1.6544 24 6 5.5344 2.6881 -0.6104 25 6 4.0070 2.6072 -0.6101 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.6613 0.3572 -1.5712 30 1 4.0474 -2.1694 -2.2803 31 1 5.5042 -2.1832 -1.2577 32 1 5.6893 -3.7048 0.6218 33 1 4.9769 -5.8450 1.6094 34 1 2.6720 -8.0228 0.2588 35 1 1.4849 -6.4566 2.3957 36 1 4.1586 -6.7989 3.3635 37 1 3.5986 -9.1211 2.9006 38 1 1.4852 -5.8128 -0.8393 39 1 2.1933 -3.6685 -1.8208 40 1 3.6760 1.9974 2.0260 41 1 3.7688 0.2266 1.8705 42 1 6.0177 0.4352 0.8460 43 1 5.9785 1.1863 2.4595 44 1 4.3908 3.6844 1.6547 45 1 5.8472 3.6713 2.6780 46 1 5.7933 4.6913 1.2204 47 1 5.9413 1.8669 -1.2002 48 1 5.8475 3.6377 -1.0443 49 1 3.6391 2.6778 -1.6337 50 1 3.6003 3.4287 -0.0204 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:06 Heat of formation + Delta-G solvation = -121.620103 kcal Electronic energy + Delta-G solvation = -32708.245850 eV Core-core repulsion = 28474.113813 eV Total energy + Delta-G solvation = -4234.132037 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.182 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.49891 -40.90408 -40.30456 -39.29827 -37.76617 -37.50491 -35.41180 -34.05233 -32.02892 -31.93886 -31.84542 -29.45673 -29.04889 -27.73686 -25.78494 -24.46000 -23.89304 -23.75121 -22.58633 -21.59762 -21.14530 -19.54145 -18.81898 -18.54508 -18.36104 -17.71960 -17.45386 -17.08056 -16.79800 -16.47145 -16.30629 -16.13452 -15.78846 -15.47454 -15.16447 -15.01842 -14.85238 -14.68851 -14.54776 -14.39772 -14.04658 -13.94361 -13.76660 -13.65680 -13.31255 -13.27060 -13.05254 -13.00621 -12.76814 -12.69431 -12.60283 -12.25084 -12.07039 -11.98043 -11.84522 -11.82134 -11.59274 -11.36827 -11.22087 -11.12095 -10.67853 -10.58452 -10.14596 -9.81155 -9.55295 -4.94836 0.29476 0.51925 0.94609 1.30765 1.59311 1.59629 1.87438 1.93921 2.11418 2.82153 3.31386 3.40164 3.54797 3.64446 3.67295 3.85514 3.94525 3.96767 4.01044 4.08707 4.11071 4.13526 4.16748 4.17993 4.28256 4.42248 4.43097 4.49673 4.53572 4.55457 4.57495 4.59354 4.70158 4.78413 4.81818 4.86196 4.88156 5.04431 5.07232 5.09395 5.12585 5.14951 5.23019 5.30142 5.32669 5.38762 5.40911 5.44274 5.54849 5.58813 5.66374 6.07784 6.43674 6.57171 6.60042 7.37055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.328 6.328 3 C 0.449 3.551 4 O -0.540 6.540 5 C 0.205 3.795 6 N -0.711 5.711 7 C 0.512 3.488 8 O -0.531 6.531 9 C -0.096 4.096 10 C -0.065 4.065 11 C -0.107 4.107 12 C -0.124 4.124 13 C -0.126 4.126 14 C -0.085 4.085 15 O -0.550 6.550 16 Si 0.771 3.229 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.099 4.099 21 C -0.092 4.092 22 H 0.088 0.912 23 C -0.157 4.157 24 C -0.107 4.107 25 C -0.113 4.113 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.421 0.579 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.384 0.616 36 H -0.289 1.289 37 H -0.304 1.304 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 0.860 -5.177 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.243 6.243 3 C 0.292 3.708 4 O -0.429 6.429 5 C 0.116 3.884 6 N -0.368 5.368 7 C 0.299 3.701 8 O -0.406 6.406 9 C -0.135 4.135 10 C -0.065 4.065 11 C -0.125 4.125 12 C -0.141 4.141 13 C -0.126 4.126 14 C -0.194 4.194 15 O -0.358 6.358 16 Si 0.677 3.323 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.165 4.165 20 C -0.137 4.137 21 C -0.110 4.110 22 H 0.107 0.893 23 C -0.214 4.214 24 C -0.144 4.144 25 C -0.151 4.151 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.261 0.739 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.233 0.767 36 H -0.216 1.216 37 H -0.232 1.232 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.606 0.307 -4.093 8.643 hybrid contribution -1.801 0.865 0.479 2.055 sum 5.805 1.172 -3.615 6.938 Atomic orbital electron populations 1.23401 0.76852 1.04631 1.01931 1.86893 1.23087 1.31934 1.82347 1.24943 0.93318 0.81462 0.71118 1.90661 1.67738 1.37483 1.47061 1.20083 0.83027 0.90122 0.95120 1.45955 1.54782 1.03940 1.32164 1.20984 0.79852 0.83865 0.85389 1.90756 1.37170 1.84200 1.28442 1.20734 1.04558 0.87983 1.00231 1.19522 0.94819 0.95370 0.96829 1.21212 1.00554 0.94951 0.95740 1.21141 0.96136 0.96392 1.00448 1.20295 0.96240 0.97559 0.98538 1.25267 0.92539 0.97546 1.04012 1.86548 1.31166 1.64745 1.53384 0.94125 0.84254 0.75846 0.78077 1.21040 0.99422 0.95811 0.96324 1.21183 0.96231 0.95276 1.00361 1.21918 0.98623 1.03070 0.92880 1.21454 0.92248 0.98219 1.01753 1.21159 1.00974 0.94065 0.94849 0.89341 1.21987 1.00749 0.98599 1.00078 1.21596 0.91939 1.04094 0.96796 1.21784 0.98648 0.92869 1.01773 0.91935 0.86667 0.92795 0.73933 0.85806 0.84626 0.83884 0.84413 0.85860 0.76726 1.21555 1.23232 0.86265 0.85429 0.91523 0.91080 0.90462 0.91494 0.93403 0.92866 0.92056 0.89374 0.89751 0.90126 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 113.37 1.20 1.33 16 2 O -0.33 -2.94 6.73 -43.60 -0.29 -3.24 16 3 C 0.45 3.76 6.71 71.23 0.48 4.24 16 4 O -0.54 -7.33 15.84 21.94 0.35 -6.99 16 5 C 0.21 0.10 0.63 2.86 0.00 0.10 16 6 N -0.71 3.50 4.03 -426.33 -1.72 1.78 16 7 C 0.51 -0.63 6.76 87.65 0.59 -0.04 16 8 O -0.53 -4.05 11.28 20.38 0.23 -3.82 16 9 C -0.10 0.69 5.83 29.10 0.17 0.86 16 10 C -0.06 0.06 4.37 -19.86 -0.09 -0.03 16 11 C -0.11 0.10 9.70 22.27 0.22 0.32 16 12 C -0.12 -0.04 8.67 22.27 0.19 0.15 16 13 C -0.13 -0.30 5.39 -19.87 -0.11 -0.40 16 14 C -0.08 -0.15 2.82 71.23 0.20 0.05 16 15 O -0.55 -3.09 12.77 -148.98 -1.90 -5.00 16 16 Si 0.77 -0.07 29.79 68.60 2.04 1.97 16 17 C -0.11 -0.37 9.61 22.27 0.21 -0.15 16 18 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 19 C -0.13 -0.22 4.23 30.60 0.13 -0.09 16 20 C -0.10 0.36 5.29 30.60 0.16 0.52 16 21 C -0.09 0.53 3.19 -10.79 -0.03 0.50 16 22 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 23 C -0.16 0.45 8.50 71.98 0.61 1.06 16 24 C -0.11 0.85 5.28 30.58 0.16 1.01 16 25 C -0.11 0.31 4.03 30.58 0.12 0.44 16 26 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 27 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.05 0.35 8.13 -2.39 -0.02 0.33 16 29 H 0.42 -4.97 7.32 -92.71 -0.68 -5.65 16 30 H 0.12 -1.36 8.09 -2.39 -0.02 -1.38 16 31 H 0.14 -1.79 8.08 -2.39 -0.02 -1.81 16 32 H 0.14 -0.78 8.06 -2.91 -0.02 -0.81 16 33 H 0.14 -0.44 4.88 -2.91 -0.01 -0.45 16 34 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 35 H 0.38 0.39 8.70 -74.06 -0.64 -0.25 16 36 H -0.29 -1.28 7.11 99.48 0.71 -0.58 16 37 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 38 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 39 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.07 0.26 6.43 -2.38 -0.02 0.24 16 41 H 0.07 0.49 6.17 -2.39 -0.01 0.48 16 42 H 0.08 -0.43 7.61 -2.39 -0.02 -0.45 16 43 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.05 0.00 4.81 -2.39 -0.01 -0.01 16 45 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 47 H 0.09 -1.06 6.86 -2.39 -0.02 -1.08 16 48 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 49 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.08 0.08 6.16 -2.39 -0.01 0.07 16 Total: 0.00 -22.79 386.44 2.83 -19.96 By element: Atomic # 1 Polarization: -14.29 SS G_CDS: -0.32 Total: -14.61 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.44 Total: 9.93 kcal Atomic # 7 Polarization: 3.50 SS G_CDS: -1.72 Total: 1.78 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.62 Total: -19.04 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.04 Total: 1.97 kcal Total: -22.79 2.83 -19.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.656 kcal (2) G-P(sol) polarization free energy of solvation -22.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds