Wall clock time and date at job start Sat Mar 6 2021 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99454 * 2 1 4 4 O 1.20815 * 120.00498 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99422 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47106 * 35.00460 * 5 3 2 7 7 C 1.34774 * 120.00233 * 299.99439 * 6 5 3 8 8 O 1.21586 * 120.00058 * 0.02562 * 7 6 5 9 9 C 1.47579 * 120.00330 * 180.02562 * 7 6 5 10 10 C 1.40199 * 119.82902 * 359.72702 * 9 7 6 11 11 C 1.36237 * 120.38058 * 179.73529 * 10 9 7 12 12 C 1.39877 * 119.95407 * 0.55877 * 11 10 9 13 13 C 1.40932 * 120.16924 * 359.69820 * 12 11 10 14 14 C 1.38642 * 119.49006 * 0.02562 * 13 12 11 15 15 N 1.37821 * 107.13013 * 180.02562 * 13 12 11 16 16 C 1.36572 * 109.85875 * 0.02562 * 15 13 12 17 17 C 1.34448 * 109.98636 * 359.97438 * 16 15 13 18 18 C 1.50694 * 126.48378 * 179.97438 * 17 16 15 19 19 O 1.42906 * 109.47133 * 255.02176 * 18 17 16 20 20 Si 1.86306 * 109.47208 * 15.02165 * 18 17 16 21 21 C 1.52997 * 109.47103 * 275.00394 * 5 3 2 22 22 C 1.53006 * 109.46974 * 180.02562 * 21 5 3 23 23 C 1.52999 * 109.46997 * 59.99987 * 22 21 5 24 24 H 1.09002 * 109.46716 * 180.02562 * 23 22 21 25 25 C 1.52997 * 109.47317 * 60.00177 * 23 22 21 26 26 C 1.52992 * 109.46961 * 299.99715 * 23 22 21 27 27 C 1.52996 * 109.47224 * 60.00654 * 26 23 22 28 28 H 1.08999 * 109.47221 * 59.99551 * 1 2 3 29 29 H 1.09002 * 109.46372 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46826 * 299.99091 * 1 2 3 31 31 H 0.97004 * 119.99916 * 119.99737 * 6 5 3 32 32 H 1.08005 * 119.81181 * 359.97438 * 10 9 7 33 33 H 1.07992 * 120.02713 * 180.27888 * 11 10 9 34 34 H 1.08000 * 120.16940 * 180.02562 * 14 13 12 35 35 H 0.97002 * 125.07625 * 180.02562 * 15 13 12 36 36 H 1.08003 * 125.00488 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.47428 * 135.02119 * 18 17 16 38 38 H 0.96703 * 114.00012 * 179.97438 * 19 18 17 39 39 H 1.48500 * 110.00069 * 300.00305 * 20 18 17 40 40 H 1.48500 * 109.99448 * 61.32018 * 20 18 17 41 41 H 1.09000 * 109.47140 * 300.00046 * 21 5 3 42 42 H 1.09001 * 109.47375 * 60.00064 * 21 5 3 43 43 H 1.09000 * 109.46866 * 299.99774 * 22 21 5 44 44 H 1.09001 * 109.46611 * 179.97438 * 22 21 5 45 45 H 1.09002 * 109.47153 * 299.99641 * 25 23 22 46 46 H 1.09001 * 109.46832 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.47261 * 59.99813 * 25 23 22 48 48 H 1.09001 * 109.47066 * 180.02562 * 26 23 22 49 49 H 1.08996 * 109.47747 * 300.00196 * 26 23 22 50 50 H 1.09004 * 109.47552 * 59.99646 * 27 26 23 51 51 H 1.09004 * 109.47298 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1129 0.1709 -0.7933 7 6 3.8539 -1.1041 -0.4415 8 8 3.1663 -1.3380 0.5335 9 6 4.4049 -2.2164 -1.2398 10 6 5.1927 -1.9426 -2.3668 11 6 5.7115 -2.9607 -3.1086 12 6 5.4490 -4.2879 -2.7534 13 6 4.6541 -4.5753 -1.6257 14 6 4.1349 -3.5330 -0.8731 15 7 4.5716 -5.9474 -1.5262 16 6 5.2787 -6.5294 -2.5393 17 6 5.8329 -5.5822 -3.3161 18 6 6.6886 -5.8108 -4.5352 19 8 8.0559 -5.5477 -4.2137 20 14 6.5116 -7.5787 -5.0956 21 6 4.0828 1.1757 1.4362 22 6 5.6107 1.2564 1.4356 23 6 6.0508 2.5891 0.8264 24 1 7.1393 2.6463 0.8256 25 6 5.4795 3.7418 1.6544 26 6 5.5343 2.6882 -0.6104 27 6 4.0065 2.6076 -0.6098 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 4.6612 0.3575 -1.5714 32 1 5.3926 -0.9186 -2.6463 33 1 6.3212 -2.7433 -3.9730 34 1 3.5247 -3.7407 -0.0065 35 1 4.0840 -6.4282 -0.8391 36 1 5.3781 -7.5937 -2.6938 37 1 6.3682 -5.1425 -5.3346 38 1 8.6655 -5.6753 -4.9534 39 1 6.9452 -8.5000 -4.0147 40 1 5.0998 -7.8559 -5.4633 41 1 3.6761 1.9972 2.0260 42 1 3.7689 0.2265 1.8704 43 1 6.0177 0.4351 0.8457 44 1 5.9786 1.1861 2.4593 45 1 4.3910 3.6844 1.6548 46 1 5.7935 4.6912 1.2206 47 1 5.8475 3.6711 2.6780 48 1 5.8482 3.6375 -1.0446 49 1 5.9413 1.8671 -1.2003 50 1 3.5994 3.4289 -0.0199 51 1 3.6385 2.6787 -1.6334 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:10 Heat of formation + Delta-G solvation = -80.596892 kcal Electronic energy + Delta-G solvation = -35679.617871 eV Core-core repulsion = 31125.386543 eV Total energy + Delta-G solvation = -4554.231329 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.68740 -42.36887 -40.69309 -39.57067 -37.83427 -37.53829 -37.41370 -35.56059 -33.40436 -32.34424 -31.97823 -30.80557 -30.22226 -29.07794 -27.74999 -26.45380 -25.12078 -24.31452 -23.89230 -23.66661 -21.97972 -21.28539 -20.64449 -19.63135 -19.35685 -18.85128 -18.40178 -18.22070 -17.93323 -17.47581 -17.28929 -16.72406 -16.50029 -15.92015 -15.65723 -15.55757 -15.44312 -15.11515 -15.02799 -15.02114 -14.83271 -14.74505 -14.59781 -14.51200 -14.02542 -13.81888 -13.75976 -13.66288 -13.33606 -13.21263 -13.08534 -12.71895 -12.68945 -12.60338 -12.54620 -12.12038 -12.10356 -11.90831 -11.85337 -11.84404 -11.39883 -11.24944 -11.15160 -10.84555 -10.79241 -10.26404 -10.13511 -9.43258 -8.87708 -4.90424 -0.35465 0.34715 0.91162 1.26351 1.38989 1.61146 1.73629 1.80458 1.97079 2.02569 2.12593 2.86215 3.25070 3.51501 3.53823 3.61108 3.62589 3.68842 3.75430 3.98911 4.00572 4.06616 4.07754 4.09332 4.14531 4.19103 4.23920 4.25771 4.33973 4.40313 4.43729 4.48896 4.53579 4.55618 4.59211 4.76900 4.79993 4.84246 4.87946 4.94514 5.02730 5.06680 5.10500 5.17022 5.20252 5.27528 5.28440 5.35160 5.37618 5.39738 5.44243 5.54828 5.55269 5.92203 6.38503 6.42563 6.57347 7.04560 7.16915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.203 3.797 6 N -0.703 5.703 7 C 0.564 3.436 8 O -0.532 6.532 9 C -0.124 4.124 10 C -0.108 4.108 11 C -0.075 4.075 12 C -0.084 4.084 13 C 0.068 3.932 14 C -0.067 4.067 15 N -0.580 5.580 16 C 0.064 3.936 17 C -0.187 4.187 18 C -0.044 4.044 19 O -0.567 6.567 20 Si 0.779 3.221 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.092 4.092 24 H 0.087 0.913 25 C -0.155 4.155 26 C -0.109 4.109 27 C -0.113 4.113 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.419 0.581 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.432 0.568 36 H 0.184 0.816 37 H 0.085 0.915 38 H 0.400 0.600 39 H -0.290 1.290 40 H -0.293 1.293 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -1.935 -6.502 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.294 3.706 4 O -0.423 6.423 5 C 0.115 3.885 6 N -0.360 5.360 7 C 0.353 3.647 8 O -0.409 6.409 9 C -0.128 4.128 10 C -0.127 4.127 11 C -0.094 4.094 12 C -0.089 4.089 13 C -0.039 4.039 14 C -0.088 4.088 15 N -0.183 5.183 16 C -0.065 4.065 17 C -0.195 4.195 18 C -0.153 4.153 19 O -0.376 6.376 20 Si 0.684 3.316 21 C -0.166 4.166 22 C -0.140 4.140 23 C -0.110 4.110 24 H 0.105 0.895 25 C -0.213 4.213 26 C -0.146 4.146 27 C -0.150 4.150 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.259 0.741 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.272 0.728 36 H 0.200 0.800 37 H 0.103 0.897 38 H 0.251 0.749 39 H -0.217 1.217 40 H -0.220 1.220 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.153 -2.539 -4.990 6.971 hybrid contribution -1.077 0.076 0.731 1.304 sum 3.076 -2.463 -4.259 5.802 Atomic orbital electron populations 1.23443 0.76563 1.04785 1.02144 1.86897 1.23407 1.32036 1.82372 1.24774 0.93063 0.81526 0.71283 1.90653 1.67533 1.37249 1.46863 1.20213 0.83398 0.89763 0.95136 1.45778 1.54424 1.03763 1.32059 1.18219 0.79445 0.82941 0.84137 1.90779 1.37641 1.84380 1.28099 1.19460 1.03018 0.91937 0.98403 1.20961 0.97298 1.00591 0.93861 1.20441 0.99058 0.89504 1.00380 1.19538 0.99455 0.94304 0.95641 1.18208 1.02610 0.84287 0.98776 1.20093 0.99694 0.89825 0.99237 1.41721 1.45688 1.04220 1.26703 1.21973 0.96354 0.98841 0.89348 1.20089 1.06871 0.91199 1.01319 1.24156 0.83156 1.12982 0.95057 1.86485 1.16003 1.92744 1.42409 0.94052 0.81001 0.72352 0.84238 1.21947 0.98446 1.03452 0.92779 1.21471 0.92512 0.98228 1.01786 1.21149 1.00965 0.93994 0.94902 0.89473 1.21975 1.00881 0.98393 1.00002 1.21620 0.92071 1.04130 0.96819 1.21824 0.98558 0.92614 1.02053 0.91935 0.86579 0.92323 0.74110 0.82548 0.83413 0.85175 0.72787 0.79967 0.89741 0.74942 1.21714 1.21980 0.90565 0.91070 0.91407 0.91261 0.93110 0.91823 0.92801 0.89205 0.89978 0.89348 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.56 113.37 1.20 1.35 16 2 O -0.33 -3.65 6.72 -43.68 -0.29 -3.94 16 3 C 0.45 4.50 6.71 71.24 0.48 4.98 16 4 O -0.53 -7.53 15.84 22.00 0.35 -7.18 16 5 C 0.20 0.63 0.63 2.86 0.00 0.63 16 6 N -0.70 -0.22 3.98 -429.42 -1.71 -1.93 16 7 C 0.56 3.23 6.69 86.71 0.58 3.81 16 8 O -0.53 -6.48 11.55 19.45 0.22 -6.25 16 9 C -0.12 -0.52 5.87 -20.08 -0.12 -0.64 16 10 C -0.11 0.04 9.46 22.28 0.21 0.25 16 11 C -0.08 -0.12 10.03 22.20 0.22 0.10 16 12 C -0.08 -0.48 6.35 -20.14 -0.13 -0.61 16 13 C 0.07 0.39 7.26 38.96 0.28 0.67 16 14 C -0.07 -0.41 9.61 22.63 0.22 -0.19 16 15 N -0.58 -1.18 6.07 -187.71 -1.14 -2.32 16 16 C 0.06 0.16 10.43 83.09 0.87 1.03 16 17 C -0.19 -0.80 5.60 -18.65 -0.10 -0.90 16 18 C -0.04 0.07 3.05 71.23 0.22 0.28 16 19 O -0.57 0.57 12.86 -148.98 -1.92 -1.34 16 20 Si 0.78 -3.38 30.79 68.60 2.11 -1.27 16 21 C -0.13 -0.50 4.23 30.60 0.13 -0.37 16 22 C -0.10 0.05 5.29 30.60 0.16 0.22 16 23 C -0.09 0.34 3.19 -10.80 -0.03 0.31 16 24 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 25 C -0.16 0.33 8.50 71.98 0.61 0.94 16 26 C -0.11 0.64 5.28 30.59 0.16 0.81 16 27 C -0.11 0.14 4.04 30.59 0.12 0.27 16 28 H 0.06 0.33 8.13 -2.39 -0.02 0.31 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 31 H 0.42 -2.45 5.31 -92.71 -0.49 -2.94 16 32 H 0.16 -1.21 6.36 -2.91 -0.02 -1.23 16 33 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 34 H 0.13 0.84 7.62 -2.91 -0.02 0.81 16 35 H 0.43 -1.56 8.96 -92.71 -0.83 -2.39 16 36 H 0.18 -0.27 6.30 -2.91 -0.02 -0.29 16 37 H 0.08 -0.40 7.96 -2.38 -0.02 -0.41 16 38 H 0.40 -4.67 8.74 -74.06 -0.65 -5.31 16 39 H -0.29 -0.45 7.04 99.48 0.70 0.25 16 40 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 41 H 0.08 0.34 6.43 -2.39 -0.02 0.32 16 42 H 0.07 0.65 6.16 -2.39 -0.01 0.63 16 43 H 0.07 -0.03 7.60 -2.39 -0.02 -0.04 16 44 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.05 0.01 4.81 -2.39 -0.01 0.00 16 46 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 48 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.08 -0.73 6.86 -2.39 -0.02 -0.75 16 50 H 0.09 0.12 6.16 -2.39 -0.01 0.10 16 51 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 Total: 0.00 -25.35 395.35 1.78 -23.58 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: -0.93 Total: -12.27 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.08 Total: 12.93 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -2.85 Total: -4.25 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.64 Total: -18.72 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.11 Total: -1.27 kcal Total: -25.35 1.78 -23.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.021 kcal (2) G-P(sol) polarization free energy of solvation -25.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds