Wall clock time and date at job start Sat Mar 6 2021 20:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47354 * 34.99661 * 5 3 2 7 7 C 1.34780 * 120.00120 * 300.00487 * 6 5 3 8 8 O 1.21695 * 120.00206 * 359.97438 * 7 6 5 9 9 C 1.46425 * 119.99825 * 179.97438 * 7 6 5 10 10 C 1.34810 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.47207 * 120.00341 * 180.02562 * 10 9 7 12 12 C 1.39831 * 120.16767 * 359.71826 * 11 10 9 13 13 C 1.37888 * 119.82498 * 179.74782 * 12 11 10 14 14 C 1.38400 * 120.17307 * 0.55416 * 13 12 11 15 15 C 1.50705 * 119.83384 * 179.71952 * 14 13 12 16 16 O 1.42901 * 109.47136 * 244.98027 * 15 14 13 17 17 Si 1.86295 * 109.46749 * 4.98105 * 15 14 13 18 18 C 1.38405 * 120.33985 * 359.70093 * 14 13 12 19 19 C 1.37887 * 120.17312 * 0.02562 * 18 14 13 20 20 C 1.53000 * 109.46977 * 275.00445 * 5 3 2 21 21 C 1.53005 * 109.47254 * 180.02562 * 20 5 3 22 22 C 1.53001 * 109.46991 * 59.99656 * 21 20 5 23 23 H 1.08996 * 109.47265 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47277 * 59.99982 * 22 21 20 25 25 C 1.53001 * 109.47030 * 300.00257 * 22 21 20 26 26 C 1.52990 * 109.47371 * 154.99972 * 5 3 2 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 0.96998 * 119.99948 * 119.99992 * 6 5 3 31 31 H 1.08001 * 120.00266 * 359.97438 * 9 7 6 32 32 H 1.08009 * 119.99731 * 359.97438 * 10 9 7 33 33 H 1.08003 * 120.09060 * 0.02562 * 12 11 10 34 34 H 1.07999 * 119.91775 * 180.27344 * 13 12 11 35 35 H 1.08999 * 109.47088 * 124.97485 * 15 14 13 36 36 H 0.96696 * 113.99422 * 179.97438 * 16 15 14 37 37 H 1.48505 * 110.00141 * 299.99882 * 17 15 14 38 38 H 1.48499 * 110.00402 * 61.31505 * 17 15 14 39 39 H 1.08002 * 119.91206 * 180.02562 * 18 14 13 40 40 H 1.08003 * 120.08643 * 180.02562 * 19 18 14 41 41 H 1.09005 * 109.47164 * 299.99603 * 20 5 3 42 42 H 1.08996 * 109.47906 * 59.99860 * 20 5 3 43 43 H 1.09000 * 109.46777 * 299.99399 * 21 20 5 44 44 H 1.08998 * 109.47396 * 179.97438 * 21 20 5 45 45 H 1.08996 * 109.47001 * 299.99917 * 24 22 21 46 46 H 1.08998 * 109.47008 * 60.00203 * 24 22 21 47 47 H 1.09004 * 109.46703 * 179.97438 * 24 22 21 48 48 H 1.09005 * 109.47347 * 300.00233 * 25 22 21 49 49 H 1.09004 * 109.47157 * 180.02562 * 25 22 21 50 50 H 1.08997 * 109.47512 * 300.00062 * 26 5 3 51 51 H 1.09000 * 109.47240 * 59.99985 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1136 0.1704 -0.7911 7 6 3.8542 -1.1044 -0.4390 8 8 3.1658 -1.3381 0.5370 9 6 4.4008 -2.2083 -1.2306 10 6 4.1409 -3.4834 -0.8787 11 6 4.6909 -4.5932 -1.6743 12 6 5.4783 -4.3288 -2.7991 13 6 5.9942 -5.3738 -3.5362 14 6 5.7249 -6.6815 -3.1719 15 6 6.2874 -7.8177 -3.9867 16 8 5.2172 -8.5414 -4.5975 17 14 7.4109 -7.1376 -5.3080 18 6 4.9419 -6.9513 -2.0630 19 6 4.4235 -5.9172 -1.3125 20 6 4.0816 1.1763 1.4378 21 6 5.6095 1.2570 1.4385 22 6 6.0501 2.5895 0.8291 23 1 7.1385 2.6468 0.8292 24 6 5.4780 3.7426 1.6561 25 6 5.5347 2.6880 -0.6082 26 6 4.0074 2.6070 -0.6091 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.6626 0.3566 -1.5688 31 1 5.0114 -2.0010 -2.0970 32 1 3.5299 -3.6908 -0.0126 33 1 5.6857 -3.3088 -3.0873 34 1 6.6062 -5.1712 -4.4026 35 1 6.8533 -8.4854 -3.3370 36 1 5.5064 -9.2885 -5.1390 37 1 6.6513 -6.2256 -6.2005 38 1 8.5454 -6.4097 -4.6848 39 1 4.7365 -7.9745 -1.7848 40 1 3.8130 -6.1294 -0.4472 41 1 3.6745 1.9981 2.0270 42 1 3.7674 0.2273 1.8722 43 1 6.0170 0.4355 0.8493 44 1 5.9766 1.1872 2.4625 45 1 4.3896 3.6850 1.6556 46 1 5.8451 3.6724 2.6800 47 1 5.7923 4.6918 1.2221 48 1 5.9422 1.8665 -1.1975 49 1 5.8490 3.6371 -1.0425 50 1 3.6404 2.6773 -1.6330 51 1 3.6003 3.4288 -0.0200 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12360594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:40 Heat of formation + Delta-G solvation = -99.642836 kcal Electronic energy + Delta-G solvation = -32994.203981 eV Core-core repulsion = 28632.798810 eV Total energy + Delta-G solvation = -4361.405171 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.182 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.53786 -40.81510 -40.50263 -39.46129 -37.72186 -37.54471 -35.55868 -35.15131 -32.49933 -32.13353 -31.99069 -31.01589 -29.10484 -27.81531 -27.11948 -24.74153 -24.20977 -24.02446 -23.78551 -22.24394 -21.46522 -20.53057 -19.55191 -18.86142 -18.78486 -18.37481 -17.96176 -17.47465 -17.45393 -16.77977 -16.74128 -16.40869 -16.05302 -15.57721 -15.47464 -15.17508 -15.13967 -14.99477 -14.88446 -14.55174 -14.38853 -14.07643 -14.00993 -13.84985 -13.80506 -13.67390 -13.56070 -13.33930 -13.12138 -12.96832 -12.72968 -12.64453 -12.37068 -12.14330 -12.02384 -11.94853 -11.88129 -11.85987 -11.43558 -11.35397 -11.27095 -11.16098 -10.78454 -10.30073 -10.23973 -10.11006 -9.31316 -4.93226 -0.60597 0.25549 0.83032 0.91989 1.30301 1.62440 1.65063 1.96221 2.02993 2.27350 2.71408 3.23986 3.38984 3.50144 3.52244 3.60513 3.65859 3.75997 3.91041 3.96400 3.96799 4.05259 4.13379 4.14609 4.15581 4.18199 4.22564 4.23679 4.32978 4.38106 4.45032 4.50835 4.54602 4.56790 4.73045 4.77619 4.81557 4.84775 4.88010 4.99673 5.00594 5.04376 5.07308 5.09139 5.17292 5.26112 5.27282 5.29432 5.34029 5.36539 5.37602 5.51839 5.52332 5.78545 6.47362 6.56131 6.89258 7.22214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.331 6.331 3 C 0.450 3.550 4 O -0.536 6.536 5 C 0.203 3.797 6 N -0.705 5.705 7 C 0.545 3.455 8 O -0.538 6.538 9 C -0.204 4.204 10 C -0.019 4.019 11 C -0.078 4.078 12 C -0.098 4.098 13 C -0.145 4.145 14 C -0.082 4.082 15 C -0.083 4.083 16 O -0.564 6.564 17 Si 0.772 3.228 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.101 4.101 22 C -0.092 4.092 23 H 0.087 0.913 24 C -0.156 4.156 25 C -0.108 4.108 26 C -0.112 4.112 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.420 0.580 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.404 0.596 37 H -0.295 1.295 38 H -0.287 1.287 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 -3.712 -4.070 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.246 6.246 3 C 0.293 3.707 4 O -0.425 6.425 5 C 0.114 3.886 6 N -0.361 5.361 7 C 0.335 3.665 8 O -0.417 6.417 9 C -0.225 4.225 10 C -0.039 4.039 11 C -0.078 4.078 12 C -0.115 4.115 13 C -0.162 4.162 14 C -0.082 4.082 15 C -0.193 4.193 16 O -0.374 6.374 17 Si 0.678 3.322 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.166 4.166 21 C -0.139 4.139 22 C -0.110 4.110 23 H 0.105 0.895 24 C -0.213 4.213 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.259 0.741 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.255 0.745 37 H -0.223 1.223 38 H -0.214 1.214 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.964 -2.452 -3.423 7.301 hybrid contribution -0.789 0.349 0.333 0.925 sum 5.175 -2.103 -3.090 6.384 Atomic orbital electron populations 1.23446 0.76575 1.04870 1.02065 1.86891 1.23376 1.31951 1.82344 1.24818 0.93129 0.81531 0.71235 1.90655 1.67602 1.37342 1.46945 1.20168 0.83344 0.89892 0.95209 1.45802 1.54316 1.03973 1.32040 1.18563 0.79830 0.83444 0.84685 1.90824 1.37864 1.84529 1.28453 1.22951 1.04950 0.91965 1.02609 1.22312 0.93646 0.91415 0.96478 1.19126 0.99259 0.93402 0.96062 1.21564 0.95945 1.00120 0.93905 1.21011 1.01828 0.93047 1.00342 1.19912 0.98355 0.93717 0.96254 1.24885 0.95645 0.95986 1.02782 1.86443 1.33259 1.48668 1.69054 0.94307 0.75646 0.83541 0.78710 1.21176 0.96342 1.00379 0.94229 1.21720 0.98511 0.91495 0.99844 1.21937 0.98456 1.03416 0.92750 1.21462 0.92476 0.98132 1.01799 1.21153 1.00926 0.94123 0.94832 0.89490 1.21977 1.00854 0.98398 1.00064 1.21600 0.92092 1.03998 0.96862 1.21788 0.98533 0.92821 1.01869 0.86402 0.92397 0.92047 0.74054 0.82767 0.85112 0.82979 0.86149 0.88753 0.74509 1.22305 1.21386 0.84139 0.83530 0.90833 0.90948 0.91186 0.91227 0.93179 0.92714 0.91928 0.89929 0.89493 0.90123 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.56 113.37 1.20 1.34 16 2 O -0.33 -3.50 6.72 -43.71 -0.29 -3.80 16 3 C 0.45 4.45 6.71 71.24 0.48 4.93 16 4 O -0.54 -7.71 15.84 21.98 0.35 -7.36 16 5 C 0.20 0.55 0.63 2.85 0.00 0.56 16 6 N -0.71 0.71 4.03 -430.52 -1.73 -1.02 16 7 C 0.54 1.82 6.67 86.37 0.58 2.40 16 8 O -0.54 -5.67 11.47 19.10 0.22 -5.45 16 9 C -0.20 0.16 9.41 23.62 0.22 0.38 16 10 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 11 C -0.08 -0.15 5.87 -20.15 -0.12 -0.27 16 12 C -0.10 -0.12 9.41 22.57 0.21 0.10 16 13 C -0.14 -0.50 8.65 22.23 0.19 -0.31 16 14 C -0.08 -0.28 5.39 -19.78 -0.11 -0.39 16 15 C -0.08 0.13 2.79 71.24 0.20 0.33 16 16 O -0.56 0.58 12.81 -148.98 -1.91 -1.33 16 17 Si 0.77 -2.47 29.83 68.60 2.05 -0.42 16 18 C -0.10 -0.27 9.66 22.23 0.21 -0.05 16 19 C -0.10 -0.18 9.80 22.57 0.22 0.04 16 20 C -0.13 -0.44 4.23 30.60 0.13 -0.31 16 21 C -0.10 0.13 5.29 30.60 0.16 0.29 16 22 C -0.09 0.36 3.19 -10.79 -0.03 0.33 16 23 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 24 C -0.16 0.32 8.50 71.98 0.61 0.93 16 25 C -0.11 0.63 5.28 30.58 0.16 0.80 16 26 C -0.11 0.12 4.03 30.57 0.12 0.25 16 27 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 28 H 0.06 0.37 8.13 -2.39 -0.02 0.36 16 29 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.42 -3.11 7.30 -92.71 -0.68 -3.79 16 31 H 0.15 -1.06 6.07 -2.91 -0.02 -1.08 16 32 H 0.13 0.37 7.52 -2.91 -0.02 0.35 16 33 H 0.15 -0.67 6.17 -2.91 -0.02 -0.69 16 34 H 0.12 0.30 4.84 -2.91 -0.01 0.29 16 35 H 0.09 -0.52 7.96 -2.39 -0.02 -0.54 16 36 H 0.40 -4.65 8.74 -74.06 -0.65 -5.29 16 37 H -0.30 -1.21 7.04 99.48 0.70 -0.51 16 38 H -0.29 -0.56 7.11 99.48 0.71 0.14 16 39 H 0.14 -0.01 8.06 -2.91 -0.02 -0.04 16 40 H 0.15 -0.27 8.06 -2.91 -0.02 -0.30 16 41 H 0.07 0.33 6.43 -2.38 -0.02 0.31 16 42 H 0.07 0.61 6.16 -2.39 -0.01 0.60 16 43 H 0.07 -0.12 7.60 -2.39 -0.02 -0.14 16 44 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.05 0.02 4.81 -2.39 -0.01 0.01 16 46 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.08 -0.75 6.86 -2.38 -0.02 -0.76 16 49 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 50 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 51 H 0.09 0.15 6.16 -2.39 -0.01 0.14 16 Total: 0.00 -23.02 396.40 3.03 -20.00 By element: Atomic # 1 Polarization: -11.83 SS G_CDS: -0.32 Total: -12.15 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.67 Total: 11.54 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -1.73 Total: -1.02 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.63 Total: -17.94 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.05 Total: -0.42 kcal Total: -23.02 3.03 -20.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12360594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.645 kcal (2) G-P(sol) polarization free energy of solvation -23.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds