Wall clock time and date at job start Sat Mar 6 2021 20:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00382 * 2 1 4 4 O 1.20822 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00138 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47125 * 325.00218 * 5 3 2 7 7 C 1.34771 * 120.00560 * 59.99508 * 6 5 3 8 8 O 1.21633 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.47295 * 120.00585 * 180.27795 * 7 6 5 10 10 C 1.40363 * 120.04809 * 179.72611 * 9 7 6 11 11 O 1.35679 * 120.14062 * 0.02728 * 10 9 7 12 12 C 1.38316 * 119.72359 * 180.02562 * 10 9 7 13 13 C 1.39564 * 119.81562 * 0.02562 * 12 10 9 14 14 C 1.47570 * 119.95731 * 179.97438 * 13 12 10 15 15 C 1.36104 * 125.94608 * 180.02562 * 14 13 12 16 16 C 1.40797 * 106.73292 * 179.97438 * 15 14 13 17 17 C 1.34832 * 107.05171 * 0.02562 * 16 15 14 18 18 C 1.50695 * 125.65326 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47133 * 65.00038 * 18 17 16 20 20 Si 1.86300 * 109.47363 * 185.00043 * 18 17 16 21 21 O 1.34232 * 108.69545 * 359.77223 * 17 16 15 22 22 C 1.39963 * 120.08716 * 0.02562 * 13 12 10 23 23 C 1.36380 * 120.27897 * 359.66620 * 22 13 12 24 24 C 1.52996 * 109.47482 * 205.00118 * 5 3 2 25 25 C 1.52993 * 109.47598 * 179.97438 * 24 5 3 26 26 C 1.53007 * 109.46904 * 59.99773 * 25 24 5 27 27 H 1.09002 * 109.46630 * 179.97438 * 26 25 24 28 28 C 1.52995 * 109.46927 * 60.00333 * 26 25 24 29 29 C 1.52997 * 109.46909 * 300.00002 * 26 25 24 30 30 C 1.52994 * 109.47034 * 60.00493 * 29 26 25 31 31 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46915 * 299.99962 * 1 2 3 33 33 H 1.08996 * 109.47409 * 59.99685 * 1 2 3 34 34 H 0.97000 * 120.00069 * 240.00238 * 6 5 3 35 35 H 0.96705 * 114.00273 * 89.99506 * 11 10 9 36 36 H 1.08007 * 120.09044 * 180.02562 * 12 10 9 37 37 H 1.07999 * 126.63481 * 359.96215 * 15 14 13 38 38 H 1.08001 * 126.47081 * 179.97438 * 16 15 14 39 39 H 1.08998 * 109.47490 * 305.00206 * 18 17 16 40 40 H 0.96702 * 113.99607 * 60.00068 * 19 18 17 41 41 H 1.48505 * 109.99732 * 58.68094 * 20 18 17 42 42 H 1.48493 * 110.00237 * 180.02562 * 20 18 17 43 43 H 1.08005 * 119.85963 * 179.97438 * 22 13 12 44 44 H 1.08001 * 119.91213 * 180.30246 * 23 22 13 45 45 H 1.09007 * 109.46968 * 300.00277 * 24 5 3 46 46 H 1.09000 * 109.46919 * 59.99184 * 24 5 3 47 47 H 1.09001 * 109.47449 * 179.97438 * 25 24 5 48 48 H 1.08998 * 109.47377 * 299.99945 * 25 24 5 49 49 H 1.09001 * 109.47543 * 60.00192 * 28 26 25 50 50 H 1.09006 * 109.46661 * 179.97438 * 28 26 25 51 51 H 1.09002 * 109.47128 * 299.99281 * 28 26 25 52 52 H 1.09006 * 109.46910 * 180.02562 * 29 26 25 53 53 H 1.08998 * 109.47240 * 299.99747 * 29 26 25 54 54 H 1.09008 * 109.47339 * 179.97438 * 30 29 26 55 55 H 1.08998 * 109.47717 * 59.99546 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 4.1135 0.1702 0.7912 7 6 3.8541 -1.1046 0.4391 8 8 3.1660 -1.3381 -0.5363 9 6 4.3991 -2.2151 1.2387 10 6 4.1247 -3.5430 0.8762 11 8 3.3577 -3.8078 -0.2113 12 6 4.6396 -4.5806 1.6321 13 6 5.4273 -4.3006 2.7496 14 6 5.9777 -5.4053 3.5587 15 6 6.7562 -5.2728 4.6672 16 6 7.0495 -6.5752 5.1146 17 6 6.4431 -7.4304 4.2667 18 6 6.4843 -8.9341 4.3572 19 8 5.8235 -9.3577 5.5513 20 14 5.6239 -9.6691 2.8772 21 8 5.7930 -6.7204 3.3312 22 6 5.6951 -2.9735 3.1047 23 6 5.1946 -1.9477 2.3583 24 6 4.0076 2.6068 0.6091 25 6 5.5355 2.6865 0.6091 26 6 6.0513 2.5876 -0.8280 27 1 7.1398 2.6449 -0.8279 28 6 5.4804 3.7411 -1.6552 29 6 5.6101 1.2555 -1.4376 30 6 4.0822 1.1759 -1.4376 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 4.6625 0.3563 1.5689 35 1 3.8585 -3.8954 -1.0339 36 1 4.4325 -5.6047 1.3583 37 1 7.0855 -4.3476 5.1166 38 1 7.6480 -6.8392 5.9740 39 1 7.5214 -9.2687 4.3777 40 1 4.8944 -9.0941 5.6013 41 1 6.2822 -9.2105 1.6275 42 1 5.6570 -11.1516 2.9548 43 1 6.3048 -2.7611 3.9705 44 1 5.4089 -0.9259 2.6348 45 1 3.6005 3.4286 0.0200 46 1 3.6404 2.6770 1.6330 47 1 5.8498 3.6357 1.0431 48 1 5.9422 1.8648 1.1985 49 1 5.7948 4.6902 -1.2209 50 1 5.8483 3.6709 -2.6789 51 1 4.3919 3.6843 -1.6552 52 1 5.9780 1.1849 -2.4613 53 1 6.0169 0.4338 -0.8482 54 1 3.7678 0.2270 -1.8724 55 1 3.6755 1.9976 -2.0270 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_12807986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:06 Heat of formation + Delta-G solvation = -133.932469 kcal Electronic energy + Delta-G solvation = -41682.574300 eV Core-core repulsion = 36425.865554 eV Total energy + Delta-G solvation = -5256.708746 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.72375 -42.56411 -41.19586 -40.20033 -38.99721 -38.05784 -37.77221 -37.49218 -35.46042 -34.25018 -33.60935 -31.97635 -31.80252 -31.17224 -30.22837 -29.06014 -27.75173 -26.98160 -24.77605 -24.28984 -23.98948 -23.87222 -22.60268 -22.13286 -21.52288 -21.20164 -19.88813 -19.38200 -18.88400 -18.76708 -18.48868 -17.90054 -17.64244 -17.47224 -17.39810 -16.92086 -16.60192 -16.51537 -16.15639 -16.02244 -15.73758 -15.42925 -15.39855 -15.09661 -14.91115 -14.72285 -14.50174 -14.39132 -14.29011 -14.01551 -13.95307 -13.85314 -13.75428 -13.63671 -13.55112 -13.42711 -13.27278 -13.05337 -12.81928 -12.68800 -12.66782 -12.57687 -12.25399 -12.08804 -11.86245 -11.81723 -11.74565 -11.35877 -11.21817 -11.13822 -11.07838 -10.70401 -10.63584 -10.54388 -10.19324 -9.89643 -8.98327 -5.04067 -0.73432 0.20420 0.67756 0.94840 1.14110 1.41744 1.48144 1.66740 1.75338 1.87401 1.96968 2.06255 2.71735 3.06949 3.26944 3.32091 3.44630 3.55354 3.63572 3.66417 3.73344 3.89822 4.00616 4.01092 4.01833 4.06538 4.09743 4.17066 4.21530 4.25991 4.27673 4.32952 4.42756 4.45186 4.48670 4.58595 4.60564 4.67567 4.73228 4.81178 4.83383 4.86703 4.89318 4.91695 5.04822 5.08807 5.12258 5.12629 5.14292 5.20693 5.26196 5.30285 5.32628 5.37531 5.41589 5.44425 5.56516 5.58216 5.98558 6.47170 6.59813 6.60923 6.77108 7.24871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.330 6.330 3 C 0.449 3.551 4 O -0.536 6.536 5 C 0.206 3.794 6 N -0.706 5.706 7 C 0.557 3.443 8 O -0.512 6.512 9 C -0.172 4.172 10 C 0.165 3.835 11 O -0.492 6.492 12 C -0.153 4.153 13 C 0.023 3.977 14 C 0.007 3.993 15 C -0.174 4.174 16 C -0.185 4.185 17 C -0.054 4.054 18 C -0.024 4.024 19 O -0.541 6.541 20 Si 0.768 3.232 21 O -0.174 6.174 22 C -0.110 4.110 23 C -0.055 4.055 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.092 4.092 27 H 0.087 0.913 28 C -0.156 4.156 29 C -0.100 4.100 30 C -0.127 4.127 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.417 0.583 35 H 0.407 0.593 36 H 0.138 0.862 37 H 0.181 0.819 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.399 0.601 41 H -0.294 1.294 42 H -0.278 1.278 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.052 0.948 51 H 0.049 0.951 52 H 0.068 0.932 53 H 0.071 0.929 54 H 0.073 0.927 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 1.697 4.108 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.244 6.244 3 C 0.292 3.708 4 O -0.426 6.426 5 C 0.117 3.883 6 N -0.364 5.364 7 C 0.345 3.655 8 O -0.387 6.387 9 C -0.175 4.175 10 C 0.118 3.882 11 O -0.304 6.304 12 C -0.171 4.171 13 C 0.022 3.978 14 C -0.042 4.042 15 C -0.193 4.193 16 C -0.204 4.204 17 C -0.104 4.104 18 C -0.135 4.135 19 O -0.349 6.349 20 Si 0.672 3.328 21 O -0.072 6.072 22 C -0.128 4.128 23 C -0.073 4.073 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.110 4.110 27 H 0.106 0.894 28 C -0.213 4.213 29 C -0.138 4.138 30 C -0.166 4.166 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.267 0.733 36 H 0.156 0.844 37 H 0.198 0.802 38 H 0.182 0.818 39 H 0.155 0.845 40 H 0.250 0.750 41 H -0.221 1.221 42 H -0.205 1.205 43 H 0.184 0.816 44 H 0.187 0.813 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.091 0.909 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.622 0.938 2.967 5.572 hybrid contribution 0.389 0.161 -0.029 0.422 sum 5.011 1.099 2.939 5.912 Atomic orbital electron populations 1.23410 0.76693 1.04652 1.02032 1.86905 1.23276 1.31968 1.82298 1.24857 0.93202 0.81506 0.71254 1.90657 1.67628 1.37346 1.46960 1.20163 0.83195 0.89736 0.95188 1.45797 1.54627 1.03780 1.32187 1.18127 0.80024 0.82726 0.84642 1.90836 1.36250 1.84073 1.27585 1.20485 1.04037 0.92740 1.00258 1.18417 0.89661 0.90365 0.89734 1.84743 1.35093 1.92835 1.17768 1.21584 0.98922 1.00034 0.96592 1.17928 0.96111 0.90801 0.92931 1.20611 1.03747 0.81037 0.98811 1.22226 1.00890 0.99905 0.96296 1.21831 1.04103 0.92108 1.02326 1.23205 0.99836 0.95769 0.91586 1.24415 1.03527 0.86565 0.98999 1.86531 1.30433 1.78467 1.39478 0.93332 0.89348 0.77324 0.72760 1.83923 1.59148 1.17342 1.46766 1.21023 1.01081 0.89216 1.01463 1.21155 0.93303 1.01270 0.91596 1.21819 0.98627 0.92706 1.01970 1.21619 0.91957 1.04140 0.96820 1.21155 1.00948 0.94048 0.94884 0.89431 1.21981 1.00852 0.98473 1.00036 1.21454 0.92392 0.98161 1.01783 1.21937 0.98483 1.03440 0.92694 0.86791 0.92010 0.92390 0.74252 0.73266 0.84373 0.80154 0.81806 0.84465 0.75022 1.22061 1.20459 0.81589 0.81313 0.89637 0.89954 0.89414 0.89655 0.91984 0.92848 0.93211 0.91317 0.91036 0.90880 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.36 16 2 O -0.33 -3.40 6.72 -43.62 -0.29 -3.70 16 3 C 0.45 3.99 6.71 71.24 0.48 4.47 16 4 O -0.54 -7.21 15.84 21.98 0.35 -6.86 16 5 C 0.21 0.23 0.63 2.86 0.00 0.23 16 6 N -0.71 1.88 3.98 -429.68 -1.71 0.17 16 7 C 0.56 1.45 6.69 86.63 0.58 2.03 16 8 O -0.51 -4.84 10.39 26.39 0.27 -4.57 16 9 C -0.17 0.01 5.89 -19.97 -0.12 -0.10 16 10 C 0.16 0.45 6.71 22.81 0.15 0.60 16 11 O -0.49 -2.42 11.56 -68.97 -0.80 -3.21 16 12 C -0.15 -0.22 9.65 22.61 0.22 0.00 16 13 C 0.02 -0.02 5.87 -20.08 -0.12 -0.14 16 14 C 0.01 0.00 7.02 24.24 0.17 0.17 16 15 C -0.17 0.36 10.26 22.40 0.23 0.59 16 16 C -0.18 0.09 10.78 22.11 0.24 0.33 16 17 C -0.05 -0.03 6.20 24.90 0.15 0.13 16 18 C -0.02 0.04 2.98 71.23 0.21 0.25 16 19 O -0.54 1.00 12.88 -148.98 -1.92 -0.92 16 20 Si 0.77 -0.95 32.11 68.60 2.20 1.25 16 21 O -0.17 -0.39 8.79 -6.10 -0.05 -0.45 16 22 C -0.11 0.69 9.48 22.25 0.21 0.90 16 23 C -0.05 0.37 9.47 22.24 0.21 0.58 16 24 C -0.11 0.33 4.04 30.59 0.12 0.45 16 25 C -0.11 0.87 5.28 30.59 0.16 1.03 16 26 C -0.09 0.53 3.19 -10.79 -0.03 0.50 16 27 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 28 C -0.16 0.53 8.50 71.98 0.61 1.14 16 29 C -0.10 0.32 5.29 30.59 0.16 0.48 16 30 C -0.13 -0.22 4.23 30.59 0.13 -0.09 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.32 8.13 -2.38 -0.02 0.30 16 33 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 34 H 0.42 -3.95 5.32 -92.71 -0.49 -4.44 16 35 H 0.41 -0.76 9.06 -74.05 -0.67 -1.43 16 36 H 0.14 0.18 7.90 -2.91 -0.02 0.16 16 37 H 0.18 -1.47 7.24 -2.91 -0.02 -1.49 16 38 H 0.16 -0.48 8.06 -2.91 -0.02 -0.50 16 39 H 0.14 -0.38 7.96 -2.39 -0.02 -0.40 16 40 H 0.40 -3.68 8.70 -74.06 -0.64 -4.32 16 41 H -0.29 -1.63 7.11 99.48 0.71 -0.92 16 42 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 43 H 0.17 -2.02 6.96 -2.91 -0.02 -2.04 16 44 H 0.17 -2.43 6.38 -2.91 -0.02 -2.45 16 45 H 0.09 0.02 6.16 -2.38 -0.01 0.01 16 46 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.08 -1.02 6.86 -2.39 -0.02 -1.03 16 49 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 50 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 51 H 0.05 -0.04 4.81 -2.39 -0.01 -0.05 16 52 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 53 H 0.07 -0.29 7.60 -2.39 -0.02 -0.31 16 54 H 0.07 0.48 6.16 -2.38 -0.01 0.47 16 55 H 0.07 0.22 6.43 -2.39 -0.02 0.21 16 Total: 0.00 -26.07 434.76 2.24 -23.83 By element: Atomic # 1 Polarization: -19.68 SS G_CDS: -0.79 Total: -20.46 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 4.97 Total: 14.92 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -1.71 Total: 0.17 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -2.44 Total: -19.71 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.20 Total: 1.25 kcal Total: -26.07 2.24 -23.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_12807986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.102 kcal (2) G-P(sol) polarization free energy of solvation -26.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds