Wall clock time and date at job start Sat Mar 6 2021 20:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99743 * 2 1 4 4 O 1.20823 * 120.00603 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99525 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47106 * 34.99803 * 5 3 2 7 7 C 1.34774 * 120.00233 * 299.99439 * 6 5 3 8 8 O 1.21645 * 119.99682 * 0.02562 * 7 6 5 9 9 C 1.47062 * 120.00074 * 179.97438 * 7 6 5 10 10 C 1.35867 * 125.42572 * 179.69135 * 9 7 6 11 11 C 1.41590 * 107.72711 * 179.88419 * 10 9 7 12 12 C 1.40057 * 133.37843 * 180.08243 * 11 10 9 13 13 C 1.36479 * 119.82989 * 180.33028 * 12 11 10 14 14 C 1.38897 * 120.61409 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.67861 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47386 * 120.00282 * 15 14 13 17 17 Si 1.86299 * 109.46857 * 0.02562 * 15 14 13 18 18 C 1.37714 * 120.64828 * 359.97438 * 14 13 12 19 19 C 1.39189 * 119.81015 * 0.02758 * 18 14 13 20 20 N 1.37478 * 133.18891 * 179.97438 * 19 18 14 21 21 C 1.52997 * 109.47103 * 274.99736 * 5 3 2 22 22 C 1.52996 * 109.46975 * 180.02562 * 21 5 3 23 23 C 1.53002 * 109.47343 * 59.99992 * 22 21 5 24 24 H 1.09002 * 109.47067 * 180.02562 * 23 22 21 25 25 C 1.52997 * 109.47143 * 60.00066 * 23 22 21 26 26 C 1.53005 * 109.46982 * 299.99735 * 23 22 21 27 27 C 1.52996 * 109.46543 * 60.00174 * 26 23 22 28 28 H 1.09001 * 109.47189 * 300.00147 * 1 2 3 29 29 H 1.08999 * 109.46673 * 60.00494 * 1 2 3 30 30 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99916 * 119.99737 * 6 5 3 32 32 H 1.07998 * 126.13383 * 0.03058 * 10 9 7 33 33 H 1.07996 * 120.08979 * 0.35236 * 12 11 10 34 34 H 1.07995 * 119.69341 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.47287 * 240.00317 * 15 14 13 36 36 H 0.96696 * 113.99850 * 299.99930 * 16 15 14 37 37 H 1.48507 * 109.99821 * 180.02562 * 17 15 14 38 38 H 1.48494 * 110.00331 * 301.31829 * 17 15 14 39 39 H 1.08002 * 120.09607 * 179.97438 * 18 14 13 40 40 H 0.97004 * 125.60569 * 0.02804 * 20 19 18 41 41 H 1.09000 * 109.47140 * 300.00046 * 21 5 3 42 42 H 1.08992 * 109.47280 * 59.99899 * 21 5 3 43 43 H 1.09004 * 109.47368 * 299.99783 * 22 21 5 44 44 H 1.09004 * 109.47108 * 179.97438 * 22 21 5 45 45 H 1.09002 * 109.47153 * 299.99965 * 25 23 22 46 46 H 1.08996 * 109.46952 * 60.00137 * 25 23 22 47 47 H 1.09001 * 109.46832 * 180.02562 * 25 23 22 48 48 H 1.09000 * 109.47360 * 300.00293 * 26 23 22 49 49 H 1.09001 * 109.46812 * 179.97438 * 26 23 22 50 50 H 1.09004 * 109.46785 * 179.97438 * 27 26 23 51 51 H 1.09004 * 109.47694 * 60.00013 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1135 0.1703 -0.7911 7 6 3.8542 -1.1045 -0.4389 8 8 3.1655 -1.3379 0.5362 9 6 4.4030 -2.2132 -1.2340 10 6 4.2173 -3.5343 -0.9767 11 6 4.9049 -4.2684 -1.9732 12 6 5.0667 -5.6376 -2.2196 13 6 5.8126 -6.0523 -3.2847 14 6 6.4140 -5.1283 -4.1296 15 6 7.2325 -5.6095 -5.2998 16 8 6.6640 -5.1153 -6.5141 17 14 7.2374 -7.4722 -5.3300 18 6 6.2689 -3.7767 -3.9089 19 6 5.5131 -3.3291 -2.8292 20 7 5.1926 -2.0775 -2.3595 21 6 4.0817 1.1763 1.4378 22 6 5.6095 1.2570 1.4384 23 6 6.0502 2.5893 0.8288 24 1 7.1387 2.6465 0.8289 25 6 5.4783 3.7425 1.6558 26 6 5.5349 2.6878 -0.6085 27 6 4.0071 2.6072 -0.6090 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.6625 0.3565 -1.5689 32 1 3.6456 -3.9498 -0.1601 33 1 4.6023 -6.3635 -1.5687 34 1 5.9356 -7.1086 -3.4729 35 1 8.2551 -5.2447 -5.2025 36 1 5.7529 -5.4009 -6.6666 37 1 8.0419 -7.9594 -6.4793 38 1 7.7967 -7.9994 -4.0595 39 1 6.7408 -3.0661 -4.5713 40 1 5.4754 -1.2371 -2.7529 41 1 3.6746 1.9981 2.0269 42 1 3.7674 0.2274 1.8722 43 1 6.0170 0.4354 0.8492 44 1 5.9766 1.1872 2.4624 45 1 4.3898 3.6851 1.6554 46 1 5.8455 3.6723 2.6797 47 1 5.7919 4.6917 1.2213 48 1 5.9423 1.8662 -1.1976 49 1 5.8485 3.6372 -1.0426 50 1 3.6399 2.6778 -1.6329 51 1 3.5996 3.4288 -0.0198 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13158378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:20 Heat of formation + Delta-G solvation = -81.309142 kcal Electronic energy + Delta-G solvation = -35493.902107 eV Core-core repulsion = 30939.639893 eV Total energy + Delta-G solvation = -4554.262214 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.88201 -42.30180 -40.59919 -39.55923 -38.83076 -37.55374 -36.85106 -35.66419 -33.26461 -32.37053 -32.03316 -30.76901 -30.36410 -29.10059 -27.81544 -26.87285 -24.82200 -24.26266 -23.95134 -23.20318 -22.05436 -21.65453 -21.16182 -19.86021 -19.45292 -18.86875 -18.42474 -18.05134 -17.66998 -17.45083 -16.98524 -16.66610 -16.44200 -16.21988 -15.76352 -15.63042 -15.56862 -15.41437 -15.05803 -14.82004 -14.79502 -14.66819 -14.55457 -14.45034 -14.11949 -14.02564 -13.81980 -13.69879 -13.36671 -13.13985 -13.05785 -12.74298 -12.68193 -12.56015 -12.48786 -12.16581 -12.01042 -11.89987 -11.85308 -11.61858 -11.50184 -11.32270 -11.22547 -11.00521 -10.91929 -10.41505 -10.38756 -9.29944 -8.80007 -4.93098 -0.33193 0.55440 0.86334 1.00196 1.36466 1.59510 1.69675 1.74759 1.89968 2.03557 2.26028 2.80388 3.18684 3.46581 3.51966 3.57526 3.62741 3.72216 3.76109 3.93690 3.95508 4.02483 4.07456 4.16854 4.19859 4.21526 4.28241 4.32517 4.35257 4.40762 4.48496 4.52321 4.52955 4.60058 4.65167 4.73746 4.79719 4.83769 4.92189 4.97186 4.99601 5.01381 5.04681 5.08864 5.20938 5.26552 5.29519 5.33843 5.36812 5.43608 5.51173 5.56097 5.61397 6.00373 6.21891 6.43106 6.54459 6.80874 6.97569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.451 3.549 4 O -0.532 6.532 5 C 0.205 3.795 6 N -0.706 5.706 7 C 0.587 3.413 8 O -0.510 6.510 9 C 0.016 3.984 10 C -0.115 4.115 11 C -0.133 4.133 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.090 4.090 15 C -0.070 4.070 16 O -0.555 6.555 17 Si 0.776 3.224 18 C -0.110 4.110 19 C 0.108 3.892 20 N -0.566 5.566 21 C -0.129 4.129 22 C -0.102 4.102 23 C -0.092 4.092 24 H 0.086 0.914 25 C -0.156 4.156 26 C -0.109 4.109 27 C -0.113 4.113 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.414 0.586 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.396 0.604 37 H -0.303 1.303 38 H -0.286 1.286 39 H 0.134 0.866 40 H 0.430 0.570 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -0.559 -2.666 3.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.293 3.707 4 O -0.421 6.421 5 C 0.117 3.883 6 N -0.362 5.362 7 C 0.374 3.626 8 O -0.384 6.384 9 C -0.093 4.093 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.077 4.077 13 C -0.167 4.167 14 C -0.092 4.092 15 C -0.180 4.180 16 O -0.363 6.363 17 Si 0.683 3.317 18 C -0.130 4.130 19 C -0.003 4.003 20 N -0.172 5.172 21 C -0.167 4.167 22 C -0.139 4.139 23 C -0.111 4.111 24 H 0.104 0.896 25 C -0.213 4.213 26 C -0.146 4.146 27 C -0.151 4.151 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.253 0.747 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.246 0.754 37 H -0.232 1.232 38 H -0.212 1.212 39 H 0.152 0.848 40 H 0.270 0.730 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.234 -0.697 -1.977 3.064 hybrid contribution 0.093 1.162 -0.116 1.172 sum 2.327 0.466 -2.094 3.165 Atomic orbital electron populations 1.23468 0.76263 1.05025 1.02143 1.86870 1.23644 1.31882 1.82350 1.24681 0.92920 0.81647 0.71447 1.90669 1.67465 1.37265 1.46709 1.20230 0.83557 0.89394 0.95162 1.45762 1.54457 1.03968 1.32050 1.17215 0.79734 0.81772 0.83914 1.90870 1.36796 1.83763 1.27000 1.19945 1.02386 0.94793 0.92213 1.21062 1.02120 0.90742 1.00324 1.18424 1.03324 0.94244 0.97799 1.20625 0.96737 0.93319 0.96997 1.20681 1.00156 0.99521 0.96360 1.20135 0.98800 0.92975 0.97276 1.25141 0.98031 1.11630 0.83234 1.86462 1.34580 1.77023 1.38250 0.93581 0.88643 0.73128 0.76386 1.19976 1.00885 0.95894 0.96279 1.18414 1.00132 0.84541 0.97176 1.41803 1.44063 1.07378 1.23912 1.21964 0.98356 1.03810 0.92575 1.21466 0.92580 0.97993 1.01905 1.21155 1.00907 0.94180 0.94832 0.89615 1.21975 1.00957 0.98305 1.00051 1.21616 0.92153 1.03971 0.96862 1.21831 0.98452 0.92747 1.02085 0.92274 0.92000 0.86262 0.74726 0.82638 0.83553 0.83769 0.87348 0.75449 1.23160 1.21247 0.84828 0.72954 0.90323 0.90697 0.91534 0.91060 0.92979 0.92699 0.91933 0.90227 0.89318 0.89913 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.56 113.37 1.20 1.30 16 2 O -0.33 -2.83 6.72 -43.64 -0.29 -3.12 16 3 C 0.45 3.47 6.71 71.24 0.48 3.95 16 4 O -0.53 -6.48 15.84 21.97 0.35 -6.13 16 5 C 0.20 0.15 0.63 2.86 0.00 0.15 16 6 N -0.71 1.82 4.03 -429.90 -1.73 0.09 16 7 C 0.59 1.56 6.73 86.56 0.58 2.14 16 8 O -0.51 -4.68 12.08 19.26 0.23 -4.45 16 9 C 0.02 0.02 6.97 39.91 0.28 0.30 16 10 C -0.12 -0.36 10.53 22.55 0.24 -0.12 16 11 C -0.13 -0.29 6.16 -21.36 -0.13 -0.42 16 12 C -0.06 0.04 10.06 22.30 0.22 0.26 16 13 C -0.15 0.33 8.59 22.02 0.19 0.52 16 14 C -0.09 0.13 5.40 -19.83 -0.11 0.02 16 15 C -0.07 0.16 2.81 71.23 0.20 0.36 16 16 O -0.56 0.93 12.76 -148.98 -1.90 -0.97 16 17 Si 0.78 -2.53 29.75 68.60 2.04 -0.49 16 18 C -0.11 0.08 9.61 22.37 0.22 0.29 16 19 C 0.11 0.05 7.25 39.14 0.28 0.33 16 20 N -0.57 1.73 6.07 -177.19 -1.08 0.66 16 21 C -0.13 -0.19 4.23 30.59 0.13 -0.06 16 22 C -0.10 0.27 5.29 30.59 0.16 0.43 16 23 C -0.09 0.49 3.19 -10.79 -0.03 0.46 16 24 H 0.09 -0.56 8.14 -2.39 -0.02 -0.57 16 25 C -0.16 0.54 8.50 71.98 0.61 1.15 16 26 C -0.11 0.82 5.28 30.59 0.16 0.98 16 27 C -0.11 0.36 4.04 30.59 0.12 0.48 16 28 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 29 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 30 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.41 -3.65 6.37 -92.71 -0.59 -4.24 16 32 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.15 -0.67 8.06 -2.91 -0.02 -0.69 16 34 H 0.15 -0.89 4.82 -2.91 -0.01 -0.90 16 35 H 0.11 -0.14 7.96 -2.39 -0.02 -0.16 16 36 H 0.40 -3.69 8.70 -74.06 -0.64 -4.33 16 37 H -0.30 -1.40 7.11 99.48 0.71 -0.69 16 38 H -0.29 -0.42 7.10 99.48 0.71 0.29 16 39 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.43 -4.10 8.12 -92.71 -0.75 -4.85 16 41 H 0.08 0.18 6.43 -2.39 -0.02 0.16 16 42 H 0.07 0.47 6.16 -2.39 -0.01 0.46 16 43 H 0.07 -0.18 7.61 -2.39 -0.02 -0.20 16 44 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 45 H 0.05 -0.07 4.81 -2.39 -0.01 -0.08 16 46 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.08 -0.86 6.86 -2.39 -0.02 -0.88 16 49 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 50 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 51 H 0.09 -0.03 6.16 -2.39 -0.01 -0.05 16 Total: 0.00 -21.50 395.43 1.48 -20.02 By element: Atomic # 1 Polarization: -17.17 SS G_CDS: -0.94 Total: -18.12 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 4.80 Total: 12.52 kcal Atomic # 7 Polarization: 3.55 SS G_CDS: -2.81 Total: 0.74 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.61 Total: -14.67 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.04 Total: -0.49 kcal Total: -21.50 1.48 -20.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13158378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.291 kcal (2) G-P(sol) polarization free energy of solvation -21.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds