Wall clock time and date at job start Sat Mar 6 2021 20:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99701 * 2 1 4 4 O 1.20816 * 120.00234 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99481 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47152 * 35.00722 * 5 3 2 7 7 C 1.34777 * 119.99828 * 299.71771 * 6 5 3 8 8 O 1.21583 * 119.99943 * 0.28074 * 7 6 5 9 9 C 1.47659 * 120.00027 * 180.27877 * 7 6 5 10 10 C 1.40164 * 119.97079 * 0.02562 * 9 7 6 11 11 C 1.36356 * 120.66539 * 179.97438 * 10 9 7 12 12 C 1.39323 * 120.23794 * 0.02562 * 11 10 9 13 13 N 1.37402 * 133.25321 * 180.02562 * 12 11 10 14 14 C 1.36860 * 109.98253 * 179.97438 * 13 12 11 15 15 C 1.34192 * 109.96899 * 359.97438 * 14 13 12 16 16 C 1.50694 * 126.53693 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47219 * 105.02654 * 16 15 14 18 18 Si 1.86296 * 109.47422 * 345.02421 * 16 15 14 19 19 C 1.40913 * 119.64148 * 359.97438 * 12 11 10 20 20 C 1.39190 * 119.97171 * 179.72607 * 9 7 6 21 21 C 1.53000 * 109.47333 * 275.00298 * 5 3 2 22 22 C 1.52996 * 109.47253 * 180.02562 * 21 5 3 23 23 C 1.53003 * 109.47532 * 59.99836 * 22 21 5 24 24 H 1.08990 * 109.47421 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.46507 * 60.00067 * 23 22 21 26 26 C 1.53000 * 109.46985 * 300.00328 * 23 22 21 27 27 C 1.52996 * 109.46675 * 155.00389 * 5 3 2 28 28 H 1.08995 * 109.47109 * 59.99601 * 1 2 3 29 29 H 1.08994 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46873 * 299.99671 * 1 2 3 31 31 H 0.97001 * 120.00384 * 120.00218 * 6 5 3 32 32 H 1.07998 * 119.66728 * 359.95575 * 10 9 7 33 33 H 1.08002 * 119.88030 * 180.02562 * 11 10 9 34 34 H 0.97004 * 125.00465 * 359.97438 * 13 12 11 35 35 H 1.08004 * 125.01358 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.46811 * 225.02606 * 16 15 14 37 37 H 0.96699 * 114.00155 * 299.99391 * 17 16 15 38 38 H 1.48501 * 109.99892 * 180.02562 * 18 16 15 39 39 H 1.48495 * 109.99958 * 301.32033 * 18 16 15 40 40 H 1.08004 * 120.30398 * 0.02562 * 20 9 7 41 41 H 1.09003 * 109.47049 * 300.00136 * 21 5 3 42 42 H 1.09001 * 109.47192 * 60.00344 * 21 5 3 43 43 H 1.09003 * 109.46851 * 299.99825 * 22 21 5 44 44 H 1.09002 * 109.47575 * 180.02562 * 22 21 5 45 45 H 1.08998 * 109.47127 * 299.99806 * 25 23 22 46 46 H 1.08994 * 109.47504 * 60.00545 * 25 23 22 47 47 H 1.09001 * 109.46739 * 180.02562 * 25 23 22 48 48 H 1.09003 * 109.47049 * 299.99797 * 26 23 22 49 49 H 1.09001 * 109.47192 * 179.97438 * 26 23 22 50 50 H 1.09000 * 109.47665 * 299.99816 * 27 5 3 51 51 H 1.09003 * 109.47345 * 60.00086 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1135 0.1705 -0.7913 7 6 3.8588 -1.1044 -0.4360 8 8 3.1707 -1.3378 0.5388 9 6 4.4153 -2.2176 -1.2306 10 6 5.2089 -1.9477 -2.3540 11 6 5.7305 -2.9647 -3.0975 12 6 5.4791 -4.2898 -2.7481 13 7 5.8579 -5.4944 -3.2897 14 6 5.3351 -6.5231 -2.5538 15 6 4.6153 -6.0357 -1.5315 16 6 3.8775 -6.8380 -0.4908 17 8 4.6008 -6.8000 0.7410 18 14 3.7198 -8.6034 -1.0643 19 6 4.6828 -4.5742 -1.6209 20 6 4.1566 -3.5340 -0.8597 21 6 4.0817 1.1762 1.4378 22 6 5.6095 1.2569 1.4384 23 6 6.0503 2.5893 0.8289 24 1 7.1387 2.6465 0.8290 25 6 5.4784 3.7423 1.6561 26 6 5.5349 2.6879 -0.6083 27 6 4.0074 2.6070 -0.6091 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.6625 0.3567 -1.5690 32 1 5.4091 -0.9239 -2.6336 33 1 6.3406 -2.7423 -3.9605 34 1 6.4139 -5.6001 -4.0775 35 1 5.4810 -7.5724 -2.7643 36 1 2.8843 -6.4142 -0.3422 37 1 5.4955 -7.1622 0.6831 38 1 2.9934 -9.4049 -0.0468 39 1 2.9971 -8.6538 -2.3605 40 1 3.5493 -3.7465 0.0077 41 1 3.6746 1.9980 2.0270 42 1 3.7675 0.2272 1.8721 43 1 6.0170 0.4354 0.8491 44 1 5.9768 1.1862 2.4623 45 1 4.3899 3.6849 1.6556 46 1 5.8455 3.6721 2.6800 47 1 5.7919 4.6916 1.2217 48 1 5.9423 1.8664 -1.1975 49 1 5.8485 3.6373 -1.0423 50 1 3.6403 2.6774 -1.6330 51 1 3.6003 3.4288 -0.0199 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:35 Heat of formation + Delta-G solvation = -84.517627 kcal Electronic energy + Delta-G solvation = -35903.890389 eV Core-core repulsion = 31349.489045 eV Total energy + Delta-G solvation = -4554.401344 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.63430 -42.29183 -40.66978 -39.53936 -37.91078 -37.56930 -37.32871 -35.53777 -33.22808 -32.34208 -31.97621 -30.65101 -30.10956 -29.08850 -27.75243 -26.44522 -25.12900 -24.31682 -23.88748 -23.41585 -22.01762 -21.31333 -20.73607 -19.61894 -19.29987 -18.85551 -18.51034 -17.95340 -17.48836 -17.47360 -17.06693 -16.69061 -16.42194 -16.17254 -15.68518 -15.52331 -15.45255 -15.28622 -15.03859 -14.92894 -14.77751 -14.71579 -14.53477 -14.07996 -14.06874 -13.78976 -13.75214 -13.63875 -13.53143 -13.30975 -13.08008 -12.70946 -12.63251 -12.56565 -12.34459 -12.16479 -12.09685 -11.90097 -11.86104 -11.84697 -11.39336 -11.24534 -11.14730 -10.76673 -10.75260 -10.30917 -10.24476 -9.28935 -8.76540 -5.00325 -0.09552 0.24723 0.90973 1.36832 1.56024 1.61369 1.72118 1.96505 2.01351 2.04617 2.16549 2.94071 3.26624 3.52793 3.61964 3.64428 3.67776 3.76206 3.88912 3.95972 3.99335 4.02360 4.07516 4.12357 4.17035 4.18045 4.25477 4.40075 4.41034 4.45647 4.48834 4.53540 4.56846 4.60214 4.64294 4.80444 4.82055 4.84322 4.88205 5.02843 5.04427 5.06986 5.10519 5.19044 5.27904 5.28673 5.30861 5.34876 5.38925 5.40449 5.53163 5.55149 5.61974 6.02613 6.47947 6.56960 6.63459 6.89429 7.24242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C 0.450 3.550 4 O -0.534 6.534 5 C 0.204 3.796 6 N -0.704 5.704 7 C 0.562 3.438 8 O -0.539 6.539 9 C -0.172 4.172 10 C -0.070 4.070 11 C -0.125 4.125 12 C 0.109 3.891 13 N -0.572 5.572 14 C 0.085 3.915 15 C -0.227 4.227 16 C -0.051 4.051 17 O -0.564 6.564 18 Si 0.809 3.191 19 C -0.129 4.129 20 C -0.021 4.021 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.091 4.091 24 H 0.089 0.911 25 C -0.156 4.156 26 C -0.108 4.108 27 C -0.112 4.112 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.418 0.582 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.439 0.561 35 H 0.219 0.781 36 H 0.083 0.917 37 H 0.393 0.607 38 H -0.309 1.309 39 H -0.280 1.280 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 -3.164 -8.179 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.293 3.707 4 O -0.424 6.424 5 C 0.115 3.885 6 N -0.361 5.361 7 C 0.351 3.649 8 O -0.417 6.417 9 C -0.177 4.177 10 C -0.090 4.090 11 C -0.145 4.145 12 C 0.000 4.000 13 N -0.176 5.176 14 C -0.042 4.042 15 C -0.234 4.234 16 C -0.160 4.160 17 O -0.372 6.372 18 Si 0.714 3.286 19 C -0.133 4.133 20 C -0.041 4.041 21 C -0.167 4.167 22 C -0.139 4.139 23 C -0.109 4.109 24 H 0.107 0.893 25 C -0.213 4.213 26 C -0.145 4.145 27 C -0.150 4.150 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.280 0.720 35 H 0.235 0.765 36 H 0.101 0.899 37 H 0.243 0.757 38 H -0.237 1.237 39 H -0.207 1.207 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.101 0.899 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.033 -3.462 -7.610 11.594 hybrid contribution -0.964 0.768 0.053 1.234 sum 7.069 -2.694 -7.557 10.692 Atomic orbital electron populations 1.23430 0.76623 1.04688 1.02180 1.86910 1.23388 1.32175 1.82355 1.24837 0.93194 0.81452 0.71234 1.90646 1.67581 1.37207 1.46939 1.20192 0.83266 0.89894 0.95123 1.45765 1.54621 1.03715 1.32040 1.18391 0.79355 0.83024 0.84088 1.90779 1.38018 1.84436 1.28432 1.19532 1.05920 0.92189 1.00019 1.20875 0.95030 1.00475 0.92598 1.20050 1.03850 0.87964 1.02666 1.18624 0.98263 0.88535 0.94620 1.41781 1.45241 1.02996 1.27586 1.22221 0.95768 0.94731 0.91490 1.20835 1.08928 0.91647 1.01956 1.24710 0.95446 1.10528 0.85321 1.86486 1.32516 1.86970 1.31248 0.94072 0.87110 0.71632 0.75786 1.19215 1.02884 0.93632 0.97602 1.20558 0.95594 0.90925 0.97022 1.21941 0.98611 1.03240 0.92879 1.21462 0.92358 0.98305 1.01779 1.21148 1.01018 0.93862 0.94896 0.89296 1.21976 1.00831 0.98446 1.00036 1.21617 0.91950 1.04169 0.96806 1.21817 0.98681 0.92539 1.01984 0.91800 0.86798 0.92308 0.74179 0.82440 0.82202 0.72004 0.76476 0.89907 0.75707 1.23691 1.20717 0.87596 0.90689 0.91401 0.91376 0.91334 0.93245 0.92809 0.91741 0.89860 0.89121 0.89870 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.56 113.37 1.20 1.40 16 2 O -0.33 -4.43 6.74 -43.73 -0.29 -4.72 16 3 C 0.45 5.22 6.71 71.24 0.48 5.70 16 4 O -0.53 -8.24 15.84 21.99 0.35 -7.90 16 5 C 0.20 0.88 0.63 2.86 0.00 0.88 16 6 N -0.70 -0.94 3.98 -429.34 -1.71 -2.65 16 7 C 0.56 4.36 6.70 86.73 0.58 4.94 16 8 O -0.54 -8.40 11.58 19.43 0.22 -8.17 16 9 C -0.17 -0.92 5.87 -20.09 -0.12 -1.03 16 10 C -0.07 0.16 9.46 22.30 0.21 0.37 16 11 C -0.13 0.49 10.00 22.09 0.22 0.71 16 12 C 0.11 -0.07 7.27 39.19 0.28 0.22 16 13 N -0.57 3.99 6.05 -187.48 -1.13 2.86 16 14 C 0.09 -0.55 10.43 82.98 0.87 0.31 16 15 C -0.23 -0.25 5.58 -18.61 -0.10 -0.36 16 16 C -0.05 -0.11 3.06 71.23 0.22 0.11 16 17 O -0.56 -2.24 12.88 -148.98 -1.92 -4.16 16 18 Si 0.81 -2.74 30.76 68.60 2.11 -0.63 16 19 C -0.13 -0.69 6.34 -20.21 -0.13 -0.82 16 20 C -0.02 -0.20 9.64 22.74 0.22 0.02 16 21 C -0.13 -0.69 4.22 30.59 0.13 -0.56 16 22 C -0.10 -0.03 5.29 30.59 0.16 0.13 16 23 C -0.09 0.32 3.20 -10.79 -0.03 0.28 16 24 H 0.09 -0.48 8.14 -2.39 -0.02 -0.49 16 25 C -0.16 0.26 8.50 71.98 0.61 0.87 16 26 C -0.11 0.63 5.28 30.58 0.16 0.79 16 27 C -0.11 0.08 4.04 30.58 0.12 0.20 16 28 H 0.06 0.43 8.13 -2.39 -0.02 0.41 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 31 H 0.42 -2.34 5.32 -92.71 -0.49 -2.83 16 32 H 0.16 -1.52 6.36 -2.91 -0.02 -1.54 16 33 H 0.16 -1.70 8.06 -2.91 -0.02 -1.73 16 34 H 0.44 -6.16 8.96 -92.70 -0.83 -6.99 16 35 H 0.22 -3.37 6.35 -2.91 -0.02 -3.39 16 36 H 0.08 0.56 7.96 -2.39 -0.02 0.54 16 37 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 38 H -0.31 -1.72 7.11 99.48 0.71 -1.01 16 39 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 40 H 0.11 1.51 7.64 -2.91 -0.02 1.49 16 41 H 0.07 0.44 6.43 -2.39 -0.02 0.43 16 42 H 0.07 0.78 6.15 -2.39 -0.01 0.76 16 43 H 0.07 0.02 7.61 -2.39 -0.02 0.00 16 44 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.05 0.05 4.81 -2.39 -0.01 0.03 16 46 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.08 -0.77 6.86 -2.39 -0.02 -0.78 16 49 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 50 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 51 H 0.09 0.18 6.16 -2.39 -0.01 0.16 16 Total: 0.00 -30.41 395.45 1.78 -28.63 By element: Atomic # 1 Polarization: -16.50 SS G_CDS: -0.92 Total: -17.42 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 5.08 Total: 14.16 kcal Atomic # 7 Polarization: 3.05 SS G_CDS: -2.84 Total: 0.21 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.64 Total: -24.95 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.11 Total: -0.63 kcal Total: -30.41 1.78 -28.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.888 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds