Wall clock time and date at job start Sat Mar 6 2021 20:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00085 * 2 1 4 4 O 1.20827 * 119.99937 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00155 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46995 * 35.00118 * 5 3 2 7 7 C 1.34767 * 120.00203 * 300.00051 * 6 5 3 8 8 O 1.21548 * 120.00395 * 0.02562 * 7 6 5 9 9 C 1.47848 * 120.00062 * 179.97438 * 7 6 5 10 10 C 1.39519 * 120.55453 * 359.72948 * 9 7 6 11 11 N 1.31705 * 120.56078 * 179.67569 * 10 9 7 12 12 C 1.31923 * 121.87625 * 0.63177 * 11 10 9 13 13 C 1.38347 * 121.08312 * 359.65365 * 12 11 10 14 14 C 1.50707 * 120.34671 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.46971 * 119.98040 * 14 13 12 16 16 Si 1.86298 * 109.47221 * 359.97438 * 14 13 12 17 17 C 1.38351 * 119.30593 * 0.02562 * 13 12 11 18 18 C 1.53002 * 109.47303 * 275.00125 * 5 3 2 19 19 C 1.52996 * 109.46972 * 179.97438 * 18 5 3 20 20 C 1.52997 * 109.47131 * 60.00459 * 19 18 5 21 21 H 1.09002 * 109.47153 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47232 * 59.99874 * 20 19 18 23 23 C 1.52999 * 109.46991 * 299.99311 * 20 19 18 24 24 C 1.52997 * 109.47055 * 155.00429 * 5 3 2 25 25 H 1.09001 * 109.46782 * 59.99982 * 1 2 3 26 26 H 1.08999 * 109.46587 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47205 * 299.99828 * 1 2 3 28 28 H 0.97004 * 119.99396 * 119.99825 * 6 5 3 29 29 H 1.07997 * 119.72176 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.45695 * 179.67622 * 12 11 10 31 31 H 1.09004 * 109.46522 * 239.97622 * 14 13 12 32 32 H 0.96702 * 114.00154 * 299.99285 * 15 14 13 33 33 H 1.48497 * 110.00004 * 58.68280 * 16 14 13 34 34 H 1.48500 * 109.99853 * 180.02562 * 16 14 13 35 35 H 1.08002 * 120.85885 * 180.02562 * 17 13 12 36 36 H 1.08996 * 109.47407 * 300.00377 * 18 5 3 37 37 H 1.09000 * 109.46986 * 60.00149 * 18 5 3 38 38 H 1.09001 * 109.46993 * 180.02562 * 19 18 5 39 39 H 1.09000 * 109.47380 * 299.99696 * 19 18 5 40 40 H 1.09002 * 109.47045 * 300.00058 * 22 20 19 41 41 H 1.09001 * 109.47375 * 60.00133 * 22 20 19 42 42 H 1.09000 * 109.47140 * 180.02562 * 22 20 19 43 43 H 1.08993 * 109.47839 * 300.00447 * 23 20 19 44 44 H 1.09000 * 109.47160 * 180.02562 * 23 20 19 45 45 H 1.09001 * 109.47502 * 60.00512 * 24 5 3 46 46 H 1.09001 * 109.47289 * 300.00308 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1135 0.1704 -0.7912 7 6 3.8542 -1.1044 -0.4391 8 8 3.1659 -1.3378 0.5351 9 6 4.4059 -2.2190 -1.2386 10 6 5.1918 -1.9643 -2.3629 11 7 5.6887 -2.9571 -3.0715 12 6 5.4581 -4.2183 -2.7609 13 6 4.6840 -4.5539 -1.6645 14 6 4.4317 -6.0003 -1.3245 15 8 4.9360 -6.2771 -0.0165 16 14 5.2938 -7.0895 -2.5660 17 6 4.1439 -3.5478 -0.8834 18 6 4.0817 1.1763 1.4378 19 6 5.6096 1.2557 1.4383 20 6 6.0512 2.5876 0.8284 21 1 7.1397 2.6444 0.8292 22 6 5.4803 3.7414 1.6553 23 6 5.5359 2.6862 -0.6088 24 6 4.0074 2.6070 -0.6090 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.6625 0.3567 -1.5690 29 1 5.3985 -0.9444 -2.6519 30 1 5.8809 -5.0018 -3.3724 31 1 3.3600 -6.1979 -1.3501 32 1 5.8858 -6.1230 0.0797 33 1 6.7516 -6.8072 -2.5635 34 1 5.0522 -8.5185 -2.2421 35 1 3.5362 -3.7813 -0.0216 36 1 3.6746 1.9979 2.0270 37 1 3.7675 0.2272 1.8722 38 1 5.9768 1.1850 2.4621 39 1 6.0164 0.4337 0.8493 40 1 4.3917 3.6848 1.6550 41 1 5.8474 3.6711 2.6792 42 1 5.7945 4.6903 1.2206 43 1 5.9426 1.8643 -1.1979 44 1 5.8509 3.6349 -1.0434 45 1 3.6004 3.4288 -0.0198 46 1 3.6403 2.6774 -1.6329 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13287814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:55 Heat of formation + Delta-G solvation = -103.765828 kcal Electronic energy + Delta-G solvation = -30899.441610 eV Core-core repulsion = 26756.195501 eV Total energy + Delta-G solvation = -4143.246109 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.65468 -41.60905 -40.45725 -39.34075 -38.05754 -37.53739 -35.63963 -33.74611 -33.49519 -31.99641 -31.46883 -29.08979 -27.77930 -27.26414 -25.87999 -24.42632 -23.95035 -23.79741 -22.11756 -21.34887 -19.73541 -19.29978 -18.86092 -18.20914 -17.99175 -17.77598 -17.59119 -17.39165 -16.72642 -16.47934 -16.16501 -15.93076 -15.53538 -15.37429 -15.14520 -14.91183 -14.56516 -14.46068 -14.35865 -14.20065 -14.04296 -13.79087 -13.66306 -13.42707 -13.30631 -13.08714 -12.77819 -12.71299 -12.62733 -12.12965 -12.10102 -11.87184 -11.84655 -11.47741 -11.28805 -11.21694 -11.05575 -11.03496 -10.67158 -10.48944 -10.36880 -10.21529 -4.93433 -0.52537 0.00988 0.90072 1.23938 1.56355 1.59170 1.80588 1.86471 1.97837 2.67769 3.08208 3.28942 3.34398 3.43825 3.51306 3.61165 3.68737 3.73013 3.77245 3.97691 4.00631 4.06378 4.14531 4.16213 4.20698 4.23607 4.31986 4.39357 4.45138 4.55548 4.56875 4.59287 4.77936 4.83337 4.86439 4.88839 4.95501 5.01387 5.05584 5.08987 5.15056 5.25093 5.28404 5.33730 5.36817 5.38957 5.54353 6.32626 6.42395 6.56541 6.68742 7.07438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.205 3.795 6 N -0.703 5.703 7 C 0.566 3.434 8 O -0.524 6.524 9 C -0.190 4.190 10 C 0.144 3.856 11 N -0.493 5.493 12 C 0.128 3.872 13 C -0.174 4.174 14 C -0.080 4.080 15 O -0.547 6.547 16 Si 0.771 3.229 17 C 0.001 3.999 18 C -0.128 4.128 19 C -0.102 4.102 20 C -0.092 4.092 21 H 0.087 0.913 22 C -0.156 4.156 23 C -0.109 4.109 24 C -0.113 4.113 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.419 0.581 29 H 0.189 0.811 30 H 0.182 0.818 31 H 0.129 0.871 32 H 0.387 0.613 33 H -0.273 1.273 34 H -0.300 1.300 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 0.355 -4.915 6.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.293 3.707 4 O -0.422 6.422 5 C 0.117 3.883 6 N -0.360 5.360 7 C 0.352 3.648 8 O -0.400 6.400 9 C -0.195 4.195 10 C -0.014 4.014 11 N -0.200 5.200 12 C -0.028 4.028 13 C -0.176 4.176 14 C -0.189 4.189 15 O -0.355 6.355 16 Si 0.675 3.325 17 C -0.025 4.025 18 C -0.166 4.166 19 C -0.139 4.139 20 C -0.111 4.111 21 H 0.105 0.895 22 C -0.213 4.213 23 C -0.147 4.147 24 C -0.151 4.151 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.259 0.741 29 H 0.206 0.794 30 H 0.198 0.802 31 H 0.147 0.853 32 H 0.237 0.763 33 H -0.199 1.199 34 H -0.227 1.227 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.729 -0.087 -4.962 6.208 hybrid contribution -0.439 0.152 1.815 1.873 sum 3.290 0.065 -3.148 4.554 Atomic orbital electron populations 1.23451 0.76425 1.04888 1.02144 1.86875 1.23508 1.32013 1.82399 1.24745 0.93020 0.81566 0.71364 1.90667 1.67511 1.37275 1.46751 1.20208 0.83395 0.89646 0.95092 1.45781 1.54333 1.03764 1.32108 1.18125 0.79662 0.82779 0.84199 1.90811 1.37165 1.84206 1.27839 1.20947 1.04517 0.94196 0.99852 1.23433 0.89522 1.00039 0.88435 1.67809 1.21566 1.00355 1.30316 1.23193 0.92182 0.94213 0.93210 1.21342 1.00864 0.97533 0.97851 1.25242 1.06810 0.94766 0.92100 1.86614 1.29708 1.89556 1.29595 0.94113 0.78525 0.75386 0.84501 1.21612 0.93126 0.90714 0.97074 1.21947 0.98448 1.03509 0.92741 1.21464 0.92478 0.98186 1.01800 1.21153 1.00954 0.94008 0.94935 0.89511 1.21980 1.00912 0.98427 1.00005 1.21635 0.92068 1.04199 0.96749 1.21844 0.98525 0.92602 1.02151 0.91874 0.86429 0.92427 0.74085 0.79407 0.80188 0.85315 0.76318 1.19872 1.22746 0.84389 0.90584 0.91020 0.91305 0.91289 0.93081 0.92852 0.91895 0.89814 0.89278 0.89381 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.56 113.37 1.20 1.31 16 2 O -0.33 -2.94 6.72 -43.66 -0.29 -3.23 16 3 C 0.45 3.59 6.71 71.23 0.48 4.06 16 4 O -0.53 -6.65 15.84 21.96 0.35 -6.30 16 5 C 0.20 0.17 0.63 2.86 0.00 0.17 16 6 N -0.70 1.97 3.98 -429.19 -1.71 0.26 16 7 C 0.57 1.26 6.71 86.79 0.58 1.84 16 8 O -0.52 -4.90 11.66 19.57 0.23 -4.67 16 9 C -0.19 0.05 5.89 -19.99 -0.12 -0.06 16 10 C 0.14 -0.54 10.71 85.02 0.91 0.37 16 11 N -0.49 0.58 10.35 -194.76 -2.01 -1.43 16 12 C 0.13 -0.39 9.84 84.71 0.83 0.44 16 13 C -0.17 0.37 5.39 -19.81 -0.11 0.26 16 14 C -0.08 0.25 2.83 71.24 0.20 0.45 16 15 O -0.55 -0.42 12.78 -148.98 -1.90 -2.32 16 16 Si 0.77 -3.99 29.82 68.60 2.05 -1.95 16 17 C 0.00 0.00 9.31 22.73 0.21 0.21 16 18 C -0.13 -0.24 4.23 30.59 0.13 -0.11 16 19 C -0.10 0.26 5.29 30.59 0.16 0.42 16 20 C -0.09 0.49 3.19 -10.80 -0.03 0.46 16 21 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 22 C -0.16 0.51 8.50 71.98 0.61 1.12 16 23 C -0.11 0.84 5.28 30.61 0.16 1.00 16 24 C -0.11 0.36 4.04 30.61 0.12 0.48 16 25 H 0.06 0.22 8.13 -2.39 -0.02 0.20 16 26 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.06 0.29 8.13 -2.39 -0.02 0.28 16 28 H 0.42 -3.92 5.38 -92.71 -0.50 -4.42 16 29 H 0.19 -2.05 6.42 -2.91 -0.02 -2.07 16 30 H 0.18 -1.40 4.88 -2.91 -0.01 -1.41 16 31 H 0.13 -0.55 7.96 -2.38 -0.02 -0.57 16 32 H 0.39 -1.96 8.70 -74.06 -0.64 -2.61 16 33 H -0.27 0.59 7.11 99.48 0.71 1.30 16 34 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 35 H 0.14 0.52 7.74 -2.91 -0.02 0.50 16 36 H 0.08 0.22 6.43 -2.39 -0.02 0.20 16 37 H 0.07 0.50 6.17 -2.39 -0.01 0.49 16 38 H 0.07 -0.13 8.14 -2.39 -0.02 -0.14 16 39 H 0.07 -0.21 7.60 -2.39 -0.02 -0.23 16 40 H 0.05 -0.05 4.81 -2.39 -0.01 -0.06 16 41 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.08 -0.94 6.86 -2.39 -0.02 -0.96 16 44 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.09 -0.02 6.16 -2.39 -0.01 -0.03 16 46 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: 0.00 -21.18 356.86 1.98 -19.20 By element: Atomic # 1 Polarization: -11.92 SS G_CDS: -0.07 Total: -11.99 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.35 Total: 12.43 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -3.72 Total: -1.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.62 Total: -16.52 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.05 Total: -1.95 kcal Total: -21.18 1.98 -19.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13287814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.563 kcal (2) G-P(sol) polarization free energy of solvation -21.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds