Wall clock time and date at job start Sat Mar 6 2021 20:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00279 * 2 1 4 4 O 1.20831 * 119.99653 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00372 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47081 * 325.00273 * 5 3 2 7 7 C 1.34779 * 120.00488 * 59.99615 * 6 5 3 8 8 O 1.21613 * 119.99322 * 0.02562 * 7 6 5 9 9 C 1.47374 * 120.00481 * 180.02562 * 7 6 5 10 10 C 1.36413 * 127.19693 * 179.97438 * 9 7 6 11 11 C 1.50708 * 125.79699 * 0.02562 * 10 9 7 12 12 O 1.33654 * 108.40197 * 179.97438 * 10 9 7 13 13 C 1.34216 * 110.90602 * 0.02562 * 12 10 9 14 14 C 1.50692 * 125.43519 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.47319 * 120.02359 * 14 13 12 16 16 Si 1.86295 * 109.47545 * 0.02562 * 14 13 12 17 17 C 1.34178 * 109.12368 * 359.70090 * 13 12 10 18 18 C 1.52997 * 109.47466 * 205.00006 * 5 3 2 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 5 3 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 5 21 21 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 22 22 C 1.52993 * 109.47473 * 60.00001 * 20 19 18 23 23 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 20 19 25 25 H 1.08997 * 109.47605 * 300.00203 * 1 2 3 26 26 H 1.09005 * 109.47304 * 60.00280 * 1 2 3 27 27 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99956 * 240.00404 * 6 5 3 29 29 H 1.09005 * 109.47092 * 90.00082 * 11 10 9 30 30 H 1.09004 * 109.46892 * 209.99515 * 11 10 9 31 31 H 1.08997 * 109.47244 * 329.99976 * 11 10 9 32 32 H 1.09002 * 109.47229 * 240.02225 * 14 13 12 33 33 H 0.96699 * 114.00341 * 180.02562 * 15 14 13 34 34 H 1.48504 * 110.00120 * 60.00099 * 16 14 13 35 35 H 1.48502 * 110.00514 * 181.31956 * 16 14 13 36 36 H 1.07998 * 127.02205 * 180.27006 * 17 13 12 37 37 H 1.09002 * 109.47153 * 59.99773 * 18 5 3 38 38 H 1.09001 * 109.46832 * 299.99964 * 18 5 3 39 39 H 1.09004 * 109.46724 * 180.02562 * 19 18 5 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 5 41 41 H 1.09004 * 109.46998 * 59.99561 * 22 20 19 42 42 H 1.09002 * 109.47722 * 180.02562 * 22 20 19 43 43 H 1.09004 * 109.46862 * 300.00038 * 22 20 19 44 44 H 1.09002 * 109.47097 * 180.02562 * 23 20 19 45 45 H 1.09001 * 109.47142 * 300.00176 * 23 20 19 46 46 H 1.09001 * 109.47375 * 59.99908 * 24 23 20 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1128 0.1706 0.7932 7 6 3.8538 -1.1044 0.4414 8 8 3.1666 -1.3381 -0.5344 9 6 4.4031 -2.2151 1.2391 10 6 4.2350 -3.5508 1.0186 11 6 3.4405 -4.1657 -0.1048 12 8 4.8956 -4.2215 1.9674 13 6 5.5008 -3.3773 2.8174 14 6 6.3324 -3.7823 4.0070 15 8 7.6582 -3.2703 3.8579 16 14 6.3935 -5.6409 4.1183 17 6 5.2521 -2.1153 2.4353 18 6 4.0070 2.6071 0.6101 19 6 5.5349 2.6874 0.6101 20 6 6.0508 2.5886 -0.8269 21 1 7.1393 2.6462 -0.8269 22 6 5.4796 3.7417 -1.6544 23 6 5.6101 1.2561 -1.4364 24 6 4.0823 1.1759 -1.4364 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.6612 0.3572 1.5713 29 1 4.0902 -4.3223 -0.9660 30 1 3.0316 -5.1223 0.2206 31 1 2.6253 -3.4972 -0.3815 32 1 5.8870 -3.3783 4.9161 33 1 8.2506 -3.4934 4.5890 34 1 6.9989 -6.2040 2.8847 35 1 7.1843 -6.0530 5.3058 36 1 5.6019 -1.2110 2.9109 37 1 3.6390 2.6778 1.6337 38 1 3.6003 3.4287 0.0203 39 1 5.8488 3.6365 1.0447 40 1 5.9419 1.8659 1.1996 41 1 5.7935 4.6909 -1.2201 42 1 5.8467 3.6710 -2.6783 43 1 4.3910 3.6845 -1.6544 44 1 5.9781 1.1855 -2.4600 45 1 6.0172 0.4346 -0.8468 46 1 3.6752 1.9974 -2.0260 47 1 3.7683 0.2268 -1.8711 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11976204_13308374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:00 Heat of formation + Delta-G solvation = -130.329592 kcal Electronic energy + Delta-G solvation = -31923.930051 eV Core-core repulsion = 27654.501910 eV Total energy + Delta-G solvation = -4269.428141 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.67798 -42.28783 -40.30026 -39.24325 -38.15276 -37.19948 -35.43463 -34.11479 -33.18658 -31.99742 -31.70384 -29.40086 -28.91704 -27.73983 -25.85011 -24.59271 -24.02564 -23.84787 -22.38098 -21.27896 -20.63600 -19.41277 -18.93110 -18.59990 -18.44591 -17.74519 -17.24320 -17.18228 -16.93387 -16.65716 -16.17818 -15.97545 -15.66766 -15.49494 -15.02866 -14.83147 -14.69651 -14.36592 -14.20261 -14.13995 -13.98980 -13.89442 -13.81135 -13.65661 -13.53495 -13.29030 -13.11679 -12.90057 -12.69051 -12.60907 -12.57842 -12.14629 -12.10325 -11.71355 -11.53863 -11.41622 -11.28927 -11.11119 -10.87426 -10.70658 -10.55596 -10.08177 -9.47852 -5.03164 0.38037 0.86747 1.11187 1.21629 1.37231 1.66826 1.82910 1.90736 2.15458 2.49668 3.18166 3.33122 3.42360 3.57712 3.68556 3.77446 3.81916 3.96149 4.01829 4.09872 4.10544 4.21622 4.23865 4.32760 4.39223 4.40519 4.42983 4.48595 4.56737 4.60710 4.70591 4.73345 4.74740 4.79610 4.84897 4.87481 4.95518 5.04377 5.08394 5.12675 5.19445 5.24461 5.28021 5.31997 5.41232 5.47878 5.57996 5.99994 6.21106 6.50701 6.88622 7.32955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.457 3.543 4 O -0.508 6.508 5 C 0.201 3.799 6 N -0.716 5.716 7 C 0.594 3.406 8 O -0.503 6.503 9 C -0.248 4.248 10 C 0.096 3.904 11 C -0.086 4.086 12 O -0.168 6.168 13 C -0.009 4.009 14 C -0.037 4.037 15 O -0.533 6.533 16 Si 0.698 3.302 17 C -0.147 4.147 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.095 4.095 21 H 0.075 0.925 22 C -0.155 4.155 23 C -0.107 4.107 24 C -0.131 4.131 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.405 0.595 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.388 0.612 34 H -0.252 1.252 35 H -0.252 1.252 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -1.693 3.615 4.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.299 3.701 4 O -0.396 6.396 5 C 0.113 3.887 6 N -0.372 5.372 7 C 0.383 3.617 8 O -0.379 6.379 9 C -0.253 4.253 10 C 0.043 3.957 11 C -0.142 4.142 12 O -0.065 6.065 13 C -0.057 4.057 14 C -0.146 4.146 15 O -0.342 6.342 16 Si 0.597 3.403 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.113 4.113 21 H 0.093 0.907 22 C -0.212 4.212 23 C -0.145 4.145 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.241 0.759 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.238 0.762 34 H -0.175 1.175 35 H -0.177 1.177 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.789 -2.374 2.394 3.462 hybrid contribution 1.070 1.013 0.932 1.744 sum 1.860 -1.361 3.325 4.046 Atomic orbital electron populations 1.23287 0.77348 1.03660 1.02127 1.86874 1.22345 1.31638 1.82564 1.24098 0.91824 0.82031 0.72186 1.90684 1.66699 1.36630 1.45570 1.20142 0.85250 0.88548 0.94799 1.45819 1.54886 1.04558 1.31901 1.17078 0.79313 0.81536 0.83777 1.90770 1.36732 1.83728 1.26621 1.21051 1.09284 0.93458 1.01468 1.22876 0.93494 0.89707 0.89628 1.20705 0.99328 1.02124 0.92004 1.83643 1.52579 1.37785 1.32510 1.20908 1.01369 0.88232 0.95188 1.23764 0.83904 1.12817 0.94090 1.86550 1.20406 1.77151 1.50109 0.94426 0.91051 0.73777 0.81078 1.22516 1.00101 0.97569 0.96484 1.21806 0.97134 0.94370 1.02094 1.21593 0.93757 1.02623 0.97105 1.21149 1.00357 0.95229 0.94592 0.90668 1.21975 1.01544 0.97777 0.99893 1.21491 0.94139 0.97296 1.01551 1.22013 0.97048 1.05006 0.92865 0.92313 0.92038 0.88151 0.75911 0.89098 0.90031 0.86858 0.88562 0.76217 1.17527 1.17670 0.82647 0.90604 0.88342 0.90619 0.91703 0.92490 0.92505 0.92058 0.91137 0.91549 0.90136 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 101.05 1.07 1.12 16 2 O -0.32 -1.29 6.72 -47.35 -0.32 -1.61 16 3 C 0.46 1.82 6.71 36.00 0.24 2.07 16 4 O -0.51 -3.08 15.84 -18.75 -0.30 -3.38 16 5 C 0.20 0.24 0.63 -132.97 -0.08 0.16 16 6 N -0.72 -0.27 4.03 -49.76 -0.20 -0.47 16 7 C 0.59 1.36 6.75 -12.54 -0.08 1.27 16 8 O -0.50 -2.07 10.09 -19.24 -0.19 -2.26 16 9 C -0.25 -0.47 6.31 -103.28 -0.65 -1.12 16 10 C 0.10 0.16 7.37 -34.96 -0.26 -0.09 16 11 C -0.09 0.03 9.89 36.01 0.36 0.38 16 12 O -0.17 -0.30 8.89 7.65 0.07 -0.23 16 13 C -0.01 -0.01 6.24 -35.74 -0.22 -0.23 16 14 C -0.04 0.04 2.97 36.00 0.11 0.15 16 15 O -0.53 0.20 12.84 -35.23 -0.45 -0.26 16 16 Si 0.70 -0.88 32.08 -169.99 -5.45 -6.34 16 17 C -0.15 -0.12 10.46 -37.45 -0.39 -0.51 16 18 C -0.12 0.04 4.04 -26.73 -0.11 -0.07 16 19 C -0.11 0.20 5.28 -26.73 -0.14 0.06 16 20 C -0.09 0.11 3.19 -90.62 -0.29 -0.18 16 21 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 22 C -0.15 0.13 8.50 37.15 0.32 0.45 16 23 C -0.11 0.02 5.29 -26.73 -0.14 -0.12 16 24 C -0.13 -0.15 4.23 -26.73 -0.11 -0.27 16 25 H 0.06 0.09 8.13 -51.93 -0.42 -0.33 16 26 H 0.06 0.11 8.13 -51.93 -0.42 -0.31 16 27 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.40 -0.64 6.49 -40.82 -0.26 -0.91 16 29 H 0.09 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 31 H 0.11 0.06 6.48 -51.93 -0.34 -0.27 16 32 H 0.10 -0.34 7.96 -51.93 -0.41 -0.76 16 33 H 0.39 -1.81 8.74 45.56 0.40 -1.41 16 34 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 35 H -0.25 0.03 7.11 56.52 0.40 0.43 16 36 H 0.16 -0.20 7.74 -52.49 -0.41 -0.61 16 37 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.10 0.05 6.16 -51.93 -0.32 -0.27 16 39 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 40 H 0.06 -0.16 6.86 -51.93 -0.36 -0.52 16 41 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 43 H 0.06 -0.01 4.81 -51.93 -0.25 -0.26 16 44 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 45 H 0.07 0.03 7.61 -51.93 -0.39 -0.37 16 46 H 0.08 0.10 6.43 -51.93 -0.33 -0.24 16 47 H 0.10 0.29 6.16 -51.93 -0.32 -0.03 16 LS Contribution 368.10 15.07 5.55 5.55 Total: 0.00 -8.04 368.10 -8.55 -16.59 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: -6.84 Total: -10.64 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.40 Total: 3.04 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -0.20 Total: -0.47 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.19 Total: -7.74 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.45 Total: -6.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -8.04 -8.55 -16.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13308374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.740 kcal (2) G-P(sol) polarization free energy of solvation -8.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds