Wall clock time and date at job start Sat Mar 6 2021 20:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00279 * 2 1 4 4 O 1.20831 * 119.99653 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00372 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47081 * 325.00273 * 5 3 2 7 7 C 1.34779 * 120.00488 * 59.99615 * 6 5 3 8 8 O 1.21613 * 119.99322 * 0.02562 * 7 6 5 9 9 C 1.47374 * 120.00481 * 180.02562 * 7 6 5 10 10 C 1.36413 * 127.19693 * 179.97438 * 9 7 6 11 11 C 1.50708 * 125.79699 * 0.02562 * 10 9 7 12 12 O 1.33654 * 108.40197 * 179.97438 * 10 9 7 13 13 C 1.34216 * 110.90602 * 0.02562 * 12 10 9 14 14 C 1.50692 * 125.43519 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.47319 * 120.02359 * 14 13 12 16 16 Si 1.86295 * 109.47545 * 0.02562 * 14 13 12 17 17 C 1.34178 * 109.12368 * 359.70090 * 13 12 10 18 18 C 1.52997 * 109.47466 * 205.00006 * 5 3 2 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 5 3 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 5 21 21 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 22 22 C 1.52993 * 109.47473 * 60.00001 * 20 19 18 23 23 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 20 19 25 25 H 1.08997 * 109.47605 * 300.00203 * 1 2 3 26 26 H 1.09005 * 109.47304 * 60.00280 * 1 2 3 27 27 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99956 * 240.00404 * 6 5 3 29 29 H 1.09005 * 109.47092 * 90.00082 * 11 10 9 30 30 H 1.09004 * 109.46892 * 209.99515 * 11 10 9 31 31 H 1.08997 * 109.47244 * 329.99976 * 11 10 9 32 32 H 1.09002 * 109.47229 * 240.02225 * 14 13 12 33 33 H 0.96699 * 114.00341 * 180.02562 * 15 14 13 34 34 H 1.48504 * 110.00120 * 60.00099 * 16 14 13 35 35 H 1.48502 * 110.00514 * 181.31956 * 16 14 13 36 36 H 1.07998 * 127.02205 * 180.27006 * 17 13 12 37 37 H 1.09002 * 109.47153 * 59.99773 * 18 5 3 38 38 H 1.09001 * 109.46832 * 299.99964 * 18 5 3 39 39 H 1.09004 * 109.46724 * 180.02562 * 19 18 5 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 5 41 41 H 1.09004 * 109.46998 * 59.99561 * 22 20 19 42 42 H 1.09002 * 109.47722 * 180.02562 * 22 20 19 43 43 H 1.09004 * 109.46862 * 300.00038 * 22 20 19 44 44 H 1.09002 * 109.47097 * 180.02562 * 23 20 19 45 45 H 1.09001 * 109.47142 * 300.00176 * 23 20 19 46 46 H 1.09001 * 109.47375 * 59.99908 * 24 23 20 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1128 0.1706 0.7932 7 6 3.8538 -1.1044 0.4414 8 8 3.1666 -1.3381 -0.5344 9 6 4.4031 -2.2151 1.2391 10 6 4.2350 -3.5508 1.0186 11 6 3.4405 -4.1657 -0.1048 12 8 4.8956 -4.2215 1.9674 13 6 5.5008 -3.3773 2.8174 14 6 6.3324 -3.7823 4.0070 15 8 7.6582 -3.2703 3.8579 16 14 6.3935 -5.6409 4.1183 17 6 5.2521 -2.1153 2.4353 18 6 4.0070 2.6071 0.6101 19 6 5.5349 2.6874 0.6101 20 6 6.0508 2.5886 -0.8269 21 1 7.1393 2.6462 -0.8269 22 6 5.4796 3.7417 -1.6544 23 6 5.6101 1.2561 -1.4364 24 6 4.0823 1.1759 -1.4364 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.6612 0.3572 1.5713 29 1 4.0902 -4.3223 -0.9660 30 1 3.0316 -5.1223 0.2206 31 1 2.6253 -3.4972 -0.3815 32 1 5.8870 -3.3783 4.9161 33 1 8.2506 -3.4934 4.5890 34 1 6.9989 -6.2040 2.8847 35 1 7.1843 -6.0530 5.3058 36 1 5.6019 -1.2110 2.9109 37 1 3.6390 2.6778 1.6337 38 1 3.6003 3.4287 0.0203 39 1 5.8488 3.6365 1.0447 40 1 5.9419 1.8659 1.1996 41 1 5.7935 4.6909 -1.2201 42 1 5.8467 3.6710 -2.6783 43 1 4.3910 3.6845 -1.6544 44 1 5.9781 1.1855 -2.4600 45 1 6.0172 0.4346 -0.8468 46 1 3.6752 1.9974 -2.0260 47 1 3.7683 0.2268 -1.8711 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13308374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:58 Heat of formation + Delta-G solvation = -126.826108 kcal Electronic energy + Delta-G solvation = -31923.778128 eV Core-core repulsion = 27654.501910 eV Total energy + Delta-G solvation = -4269.276219 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.72854 -42.45412 -40.51558 -39.33021 -38.05296 -37.49688 -35.52237 -34.18599 -33.18708 -32.00358 -31.76613 -29.36734 -29.04223 -27.75337 -25.86056 -24.65616 -24.10809 -23.87216 -22.45898 -21.40813 -20.72170 -19.45028 -18.85845 -18.79501 -18.48094 -17.93681 -17.42796 -17.27476 -16.99975 -16.70250 -16.24604 -15.91959 -15.69952 -15.46269 -15.13825 -14.94262 -14.77533 -14.51829 -14.21610 -14.12995 -14.00862 -13.93745 -13.78299 -13.71500 -13.62034 -13.32256 -13.08269 -13.03982 -12.70642 -12.61920 -12.60470 -12.13789 -12.12621 -11.84879 -11.80086 -11.41002 -11.26230 -11.16995 -10.87677 -10.80598 -10.57229 -10.21171 -9.51863 -4.93619 0.29270 0.84925 0.94905 1.19422 1.39022 1.66589 1.69902 1.94747 2.05947 2.36964 3.23533 3.29356 3.53019 3.54157 3.63314 3.76518 3.79304 3.98085 4.00969 4.07311 4.18021 4.20848 4.24210 4.24816 4.32300 4.39619 4.44430 4.52767 4.56750 4.62872 4.64441 4.71033 4.78694 4.82079 4.86546 4.87468 5.01274 5.05457 5.08651 5.15785 5.20979 5.27192 5.29095 5.31721 5.35021 5.37547 5.53670 5.95622 6.46129 6.53542 6.60870 7.21820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C 0.452 3.548 4 O -0.535 6.535 5 C 0.204 3.796 6 N -0.704 5.704 7 C 0.593 3.407 8 O -0.525 6.525 9 C -0.261 4.261 10 C 0.084 3.916 11 C -0.083 4.083 12 O -0.176 6.176 13 C -0.024 4.024 14 C -0.036 4.036 15 O -0.552 6.552 16 Si 0.760 3.240 17 C -0.148 4.148 18 C -0.112 4.112 19 C -0.109 4.109 20 C -0.092 4.092 21 H 0.084 0.916 22 C -0.155 4.155 23 C -0.102 4.102 24 C -0.126 4.126 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.121 0.879 28 H 0.416 0.584 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.406 0.594 34 H -0.312 1.312 35 H -0.264 1.264 36 H 0.177 0.823 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -1.309 5.033 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.244 6.244 3 C 0.295 3.705 4 O -0.424 6.424 5 C 0.116 3.884 6 N -0.360 5.360 7 C 0.382 3.618 8 O -0.403 6.403 9 C -0.266 4.266 10 C 0.031 3.969 11 C -0.139 4.139 12 O -0.073 6.073 13 C -0.071 4.071 14 C -0.145 4.145 15 O -0.364 6.364 16 Si 0.664 3.336 17 C -0.167 4.167 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.110 4.110 21 H 0.102 0.898 22 C -0.212 4.212 23 C -0.139 4.139 24 C -0.165 4.165 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.254 0.746 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.258 0.742 34 H -0.240 1.240 35 H -0.189 1.189 36 H 0.194 0.806 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.613 -1.985 3.860 4.630 hybrid contribution 0.822 0.833 0.437 1.249 sum 2.435 -1.152 4.296 5.071 Atomic orbital electron populations 1.23459 0.76448 1.05012 1.02005 1.86883 1.23454 1.31792 1.82300 1.24700 0.92918 0.81618 0.71272 1.90660 1.67518 1.37326 1.46937 1.20177 0.83601 0.89543 0.95081 1.45689 1.54521 1.03817 1.32014 1.17211 0.79025 0.82087 0.83525 1.90761 1.37801 1.84123 1.27618 1.21146 1.09896 0.93410 1.02127 1.23224 0.93639 0.90034 0.89971 1.20712 0.98903 1.02598 0.91677 1.83649 1.52758 1.38223 1.32713 1.21429 1.01594 0.88458 0.95654 1.23909 0.83773 1.12490 0.94308 1.86502 1.21004 1.77282 1.51625 0.93685 0.89990 0.72779 0.77131 1.22768 0.99596 0.98347 0.95987 1.21802 0.98300 0.92912 1.01974 1.21600 0.92339 1.03813 0.96840 1.21141 1.00795 0.94225 0.94868 0.89799 1.21969 1.00969 0.98245 0.99989 1.21448 0.92844 0.97949 1.01673 1.21937 0.98109 1.03677 0.92750 0.92162 0.92425 0.86125 0.74589 0.88810 0.88330 0.87843 0.85279 0.74162 1.23990 1.18890 0.80602 0.90093 0.89261 0.89389 0.90478 0.91896 0.92688 0.92953 0.91178 0.91840 0.90505 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.56 113.37 1.20 1.30 16 2 O -0.33 -3.07 6.72 -43.61 -0.29 -3.36 16 3 C 0.45 4.15 6.71 71.23 0.48 4.63 16 4 O -0.53 -7.23 15.84 21.95 0.35 -6.88 16 5 C 0.20 0.61 0.63 2.86 0.00 0.61 16 6 N -0.70 -0.57 4.03 -429.61 -1.73 -2.30 16 7 C 0.59 3.09 6.75 86.65 0.58 3.67 16 8 O -0.53 -5.05 10.09 19.36 0.20 -4.86 16 9 C -0.26 -1.06 6.31 -18.99 -0.12 -1.18 16 10 C 0.08 0.34 7.37 25.26 0.19 0.53 16 11 C -0.08 -0.02 9.89 71.24 0.70 0.69 16 12 O -0.18 -0.68 8.89 4.44 0.04 -0.64 16 13 C -0.02 -0.04 6.24 24.76 0.15 0.11 16 14 C -0.04 0.13 2.97 71.23 0.21 0.34 16 15 O -0.55 1.10 12.84 -148.98 -1.91 -0.81 16 16 Si 0.76 -1.97 32.08 68.60 2.20 0.23 16 17 C -0.15 -0.13 10.46 23.65 0.25 0.12 16 18 C -0.11 0.09 4.04 30.59 0.12 0.21 16 19 C -0.11 0.52 5.28 30.59 0.16 0.68 16 20 C -0.09 0.28 3.19 -10.80 -0.03 0.24 16 21 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 22 C -0.15 0.29 8.50 71.98 0.61 0.90 16 23 C -0.10 0.02 5.29 30.59 0.16 0.18 16 24 C -0.13 -0.44 4.23 30.60 0.13 -0.31 16 25 H 0.06 0.24 8.13 -2.39 -0.02 0.22 16 26 H 0.06 0.29 8.13 -2.38 -0.02 0.27 16 27 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.42 -1.68 6.49 -92.71 -0.60 -2.28 16 29 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.10 0.26 6.48 -2.39 -0.02 0.24 16 32 H 0.13 -1.27 7.96 -2.39 -0.02 -1.29 16 33 H 0.41 -4.36 8.74 -74.06 -0.65 -5.01 16 34 H -0.31 -2.37 7.11 99.48 0.71 -1.66 16 35 H -0.26 0.22 7.11 99.48 0.71 0.93 16 36 H 0.18 -0.76 7.74 -2.91 -0.02 -0.78 16 37 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.09 0.14 6.16 -2.39 -0.01 0.12 16 39 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.08 -0.53 6.86 -2.39 -0.02 -0.55 16 41 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.05 0.01 4.81 -2.38 -0.01 0.00 16 44 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.06 0.05 7.61 -2.39 -0.02 0.03 16 46 H 0.08 0.30 6.43 -2.39 -0.02 0.29 16 47 H 0.07 0.60 6.16 -2.39 -0.01 0.58 16 Total: 0.00 -20.19 368.10 3.45 -16.75 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: -0.20 Total: -10.84 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.80 Total: 12.72 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -1.73 Total: -2.30 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.62 Total: -16.56 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.20 Total: 0.23 kcal Total: -20.19 3.45 -16.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13308374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.081 kcal (2) G-P(sol) polarization free energy of solvation -20.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds