Wall clock time and date at job start Sat Mar 6 2021 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99569 * 2 1 4 4 O 1.20818 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99609 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47182 * 324.99560 * 5 3 2 7 7 C 1.34774 * 119.99947 * 60.00302 * 6 5 3 8 8 O 1.21593 * 120.00300 * 359.97438 * 7 6 5 9 9 C 1.47562 * 120.00214 * 180.02562 * 7 6 5 10 10 C 1.39835 * 120.00161 * 179.97438 * 9 7 6 11 11 C 1.36565 * 119.99586 * 180.02562 * 10 9 7 12 12 C 1.39819 * 120.00044 * 0.27809 * 11 10 9 13 13 C 1.47563 * 119.99845 * 179.72185 * 12 11 10 14 14 C 1.34980 * 125.28019 * 179.72074 * 13 12 11 15 15 C 1.37799 * 114.70323 * 179.79334 * 14 13 12 16 16 C 1.33742 * 115.07772 * 0.49944 * 15 14 13 17 17 C 1.50703 * 125.12020 * 179.73471 * 16 15 14 18 18 O 1.42901 * 109.47189 * 64.97031 * 17 16 15 19 19 Si 1.86291 * 109.47420 * 184.97761 * 17 16 15 20 20 S 1.75858 * 109.76445 * 359.73008 * 16 15 14 21 21 C 1.39819 * 120.00405 * 359.44739 * 12 11 10 22 22 C 1.36562 * 119.99895 * 0.55267 * 21 12 11 23 23 C 1.53004 * 109.46869 * 204.99887 * 5 3 2 24 24 C 1.52999 * 109.46940 * 179.97438 * 23 5 3 25 25 C 1.52997 * 109.47199 * 60.00051 * 24 23 5 26 26 H 1.08997 * 109.47301 * 179.97438 * 25 24 23 27 27 C 1.52997 * 109.47323 * 60.00000 * 25 24 23 28 28 C 1.53004 * 109.47133 * 299.99831 * 25 24 23 29 29 C 1.52997 * 109.47421 * 84.99846 * 5 3 2 30 30 H 1.08996 * 109.47348 * 299.99957 * 1 2 3 31 31 H 1.09002 * 109.47235 * 60.00439 * 1 2 3 32 32 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 33 33 H 0.97008 * 120.00291 * 240.00675 * 6 5 3 34 34 H 1.08000 * 120.00109 * 359.97438 * 10 9 7 35 35 H 1.08002 * 119.99449 * 179.97438 * 11 10 9 36 36 H 1.07999 * 122.64659 * 0.02562 * 14 13 12 37 37 H 1.07991 * 122.46122 * 180.23116 * 15 14 13 38 38 H 1.09007 * 109.46707 * 304.97583 * 17 16 15 39 39 H 0.96703 * 113.99597 * 180.02562 * 18 17 16 40 40 H 1.48504 * 110.00226 * 178.67902 * 19 17 16 41 41 H 1.48500 * 109.99748 * 299.99481 * 19 17 16 42 42 H 1.08008 * 120.00057 * 180.27332 * 21 12 11 43 43 H 1.08002 * 120.00008 * 179.74713 * 22 21 12 44 44 H 1.08997 * 109.47053 * 299.99681 * 23 5 3 45 45 H 1.08994 * 109.46944 * 59.99918 * 23 5 3 46 46 H 1.08998 * 109.47188 * 179.97438 * 24 23 5 47 47 H 1.09005 * 109.47302 * 299.99585 * 24 23 5 48 48 H 1.08998 * 109.47245 * 59.99643 * 27 25 24 49 49 H 1.08997 * 109.47198 * 180.02562 * 27 25 24 50 50 H 1.09005 * 109.46931 * 299.99526 * 27 25 24 51 51 H 1.09005 * 109.47292 * 180.02562 * 28 25 24 52 52 H 1.09005 * 109.46784 * 300.00107 * 28 25 24 53 53 H 1.08998 * 109.47252 * 299.99696 * 29 5 3 54 54 H 1.08997 * 109.47234 * 59.99870 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 4.1134 0.1705 0.7913 7 6 3.8541 -1.1043 0.4392 8 8 3.1657 -1.3379 -0.5355 9 6 4.4048 -2.2168 1.2371 10 6 4.1353 -3.5394 0.8720 11 6 4.6446 -4.5689 1.6109 12 6 5.4306 -4.3003 2.7356 13 6 5.9758 -5.4126 3.5374 14 6 6.7484 -5.2764 4.6358 15 6 7.1339 -6.4636 5.2196 16 6 6.6938 -7.5668 4.6047 17 6 6.9838 -8.9787 5.0447 18 8 6.3797 -9.2144 6.3181 19 14 6.2877 -10.1735 3.7963 20 16 5.7257 -7.1218 3.2057 21 6 5.7048 -2.9778 3.0973 22 6 5.1956 -1.9483 2.3586 23 6 4.0073 2.6071 0.6091 24 6 5.5352 2.6869 0.6091 25 6 6.0511 2.5881 -0.8278 26 1 7.1395 2.6454 -0.8279 27 6 5.4802 3.7415 -1.6552 28 6 5.6100 1.2559 -1.4376 29 6 4.0816 1.1763 -1.4378 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.6624 0.3568 1.5691 34 1 3.5238 -3.7468 0.0063 35 1 4.4361 -5.5905 1.3291 36 1 7.0383 -4.3130 5.0283 37 1 7.7499 -6.5006 6.1058 38 1 8.0618 -9.1210 5.1220 39 1 6.5262 -10.1056 6.6639 40 1 6.5947 -11.5686 4.2023 41 1 4.8186 -9.9896 3.6817 42 1 6.3157 -2.7705 3.9636 43 1 5.4041 -0.9267 2.6403 44 1 3.6002 3.4288 0.0200 45 1 3.6402 2.6773 1.6330 46 1 5.8494 3.6362 1.0431 47 1 5.9420 1.8652 1.1986 48 1 5.7943 4.6906 -1.2208 49 1 5.8473 3.6708 -2.6790 50 1 4.3916 3.6846 -1.6553 51 1 5.9779 1.1853 -2.4612 52 1 6.0168 0.4342 -0.8481 53 1 3.7674 0.2273 -1.8721 54 1 3.6745 1.9980 -2.0269 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13308390.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:02 Heat of formation + Delta-G solvation = -77.669088 kcal Electronic energy + Delta-G solvation = -38041.308659 eV Core-core repulsion = 33229.792547 eV Total energy + Delta-G solvation = -4811.516112 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.154 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.57296 -41.02986 -40.17927 -39.37216 -38.79708 -37.55827 -37.47171 -35.57052 -33.72675 -32.45072 -31.97854 -31.63992 -30.33495 -29.07299 -27.76898 -27.14117 -24.88274 -24.36340 -23.98982 -23.81629 -23.31464 -22.06266 -21.31059 -20.06100 -19.70572 -19.04502 -18.78960 -18.68098 -18.35759 -17.91466 -17.45199 -16.99514 -16.75006 -16.49349 -16.21231 -15.94050 -15.71470 -15.50538 -15.30399 -15.19254 -15.02415 -14.88642 -14.53943 -14.47652 -14.43343 -14.17281 -14.09660 -13.96708 -13.76248 -13.64455 -13.35026 -13.29222 -13.26439 -13.08968 -12.97329 -12.73017 -12.69091 -12.59845 -12.39048 -12.13207 -12.09016 -11.84169 -11.83168 -11.56264 -11.38571 -11.23416 -11.13782 -10.79415 -10.72947 -10.50096 -10.23851 -10.13318 -9.54612 -8.99256 -5.08337 -0.84244 0.28244 0.39402 0.40369 0.77820 0.92858 1.18818 1.52222 1.56821 1.69287 1.84844 1.97288 2.06975 2.89667 3.25943 3.32519 3.47435 3.54246 3.63547 3.72539 3.76362 3.79842 3.89460 4.00950 4.02700 4.09110 4.16191 4.20549 4.24838 4.26847 4.35653 4.39261 4.41961 4.48165 4.48893 4.57121 4.58898 4.60986 4.66853 4.81671 4.86180 4.89221 4.97451 5.03626 5.04866 5.08091 5.12041 5.13830 5.19340 5.27587 5.29171 5.30188 5.32386 5.36434 5.37452 5.41293 5.51521 5.56481 5.78264 6.44192 6.52431 6.58700 7.19183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.450 3.550 4 O -0.535 6.535 5 C 0.204 3.796 6 N -0.704 5.704 7 C 0.559 3.441 8 O -0.530 6.530 9 C -0.143 4.143 10 C -0.060 4.060 11 C -0.130 4.130 12 C 0.005 3.995 13 C -0.158 4.158 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.185 4.185 17 C -0.037 4.037 18 O -0.553 6.553 19 Si 0.702 3.298 20 S 0.116 5.884 21 C -0.107 4.107 22 C -0.070 4.070 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.092 4.092 26 H 0.088 0.912 27 C -0.156 4.156 28 C -0.101 4.101 29 C -0.128 4.128 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.398 0.602 40 H -0.253 1.253 41 H -0.283 1.283 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.071 0.929 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -0.369 3.231 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.293 3.707 4 O -0.424 6.424 5 C 0.115 3.885 6 N -0.361 5.361 7 C 0.347 3.653 8 O -0.407 6.407 9 C -0.146 4.146 10 C -0.079 4.079 11 C -0.148 4.148 12 C 0.003 3.997 13 C -0.275 4.275 14 C -0.147 4.147 15 C -0.142 4.142 16 C -0.302 4.302 17 C -0.149 4.149 18 O -0.364 6.364 19 Si 0.604 3.396 20 S 0.383 5.617 21 C -0.127 4.127 22 C -0.089 4.089 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.110 4.110 26 H 0.106 0.894 27 C -0.213 4.213 28 C -0.139 4.139 29 C -0.166 4.166 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.259 0.741 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.130 0.870 39 H 0.250 0.750 40 H -0.178 1.178 41 H -0.210 1.210 42 H 0.177 0.823 43 H 0.179 0.821 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.087 0.913 52 H 0.088 0.912 53 H 0.090 0.910 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.948 -1.195 1.202 6.184 hybrid contribution -0.074 0.185 2.192 2.201 sum 5.873 -1.010 3.393 6.858 Atomic orbital electron populations 1.23440 0.76580 1.04820 1.02091 1.86892 1.23379 1.32026 1.82362 1.24807 0.93123 0.81516 0.71270 1.90657 1.67576 1.37302 1.46889 1.20200 0.83308 0.89784 0.95195 1.45801 1.54408 1.03829 1.32095 1.18371 0.79589 0.82994 0.84312 1.90795 1.37459 1.84351 1.28120 1.19978 1.03010 0.93116 0.98514 1.20910 0.96895 0.91280 0.98846 1.21014 0.98756 0.99775 0.95288 1.18438 0.95805 0.92032 0.93447 1.23184 1.06744 0.95722 1.01861 1.20634 0.98346 1.00780 0.94894 1.20227 1.01914 0.90620 1.01403 1.24056 1.05963 0.98782 1.01374 1.24119 1.02436 0.96620 0.91755 1.86562 1.78256 1.38153 1.33435 0.94538 0.80478 0.78568 0.85994 1.84241 1.50289 0.99579 1.27546 1.21174 1.00379 0.90108 1.01030 1.21257 0.94199 1.01018 0.92379 1.21822 0.98628 0.92651 1.01984 1.21621 0.91977 1.04137 0.96839 1.21152 1.00984 0.94002 0.94864 0.89393 1.21978 1.00852 0.98440 1.00039 1.21474 0.92384 0.98204 1.01834 1.21952 0.98534 1.03427 0.92715 0.91987 0.92378 0.86523 0.74120 0.85144 0.85192 0.81295 0.82620 0.86993 0.75032 1.17778 1.20986 0.82261 0.82097 0.89513 0.89922 0.89318 0.89782 0.91910 0.92810 0.93203 0.91261 0.91162 0.91026 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.56 113.37 1.20 1.34 16 2 O -0.33 -3.39 6.72 -43.67 -0.29 -3.68 16 3 C 0.45 4.13 6.71 71.24 0.48 4.61 16 4 O -0.53 -7.27 15.84 21.99 0.35 -6.92 16 5 C 0.20 0.38 0.63 2.86 0.00 0.38 16 6 N -0.70 1.16 3.98 -429.43 -1.71 -0.55 16 7 C 0.56 2.02 6.70 86.70 0.58 2.60 16 8 O -0.53 -5.70 11.57 19.43 0.22 -5.48 16 9 C -0.14 -0.14 5.88 -20.05 -0.12 -0.25 16 10 C -0.06 -0.18 9.53 22.27 0.21 0.03 16 11 C -0.13 -0.24 9.54 22.26 0.21 -0.03 16 12 C 0.00 0.00 5.88 -20.05 -0.12 -0.12 16 13 C -0.16 -0.16 6.37 23.98 0.15 -0.01 16 14 C -0.12 0.16 9.64 21.42 0.21 0.37 16 15 C -0.11 0.00 10.03 21.14 0.21 0.21 16 16 C -0.18 -0.27 5.74 24.67 0.14 -0.13 16 17 C -0.04 0.05 2.95 71.24 0.21 0.26 16 18 O -0.55 -0.48 12.86 -148.98 -1.92 -2.40 16 19 Si 0.70 -0.81 30.97 68.60 2.12 1.31 16 20 S 0.12 0.24 19.48 -56.49 -1.10 -0.86 16 21 C -0.11 0.45 9.48 22.26 0.21 0.66 16 22 C -0.07 0.35 9.48 22.26 0.21 0.56 16 23 C -0.11 0.27 4.04 30.60 0.12 0.39 16 24 C -0.11 0.79 5.28 30.59 0.16 0.96 16 25 C -0.09 0.47 3.19 -10.79 -0.03 0.43 16 26 H 0.09 -0.59 8.14 -2.39 -0.02 -0.60 16 27 C -0.16 0.46 8.50 71.98 0.61 1.07 16 28 C -0.10 0.21 5.29 30.61 0.16 0.37 16 29 C -0.13 -0.34 4.23 30.61 0.13 -0.21 16 30 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 31 H 0.06 0.36 8.13 -2.39 -0.02 0.34 16 32 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.42 -3.48 5.33 -92.70 -0.49 -3.97 16 34 H 0.13 0.58 7.64 -2.91 -0.02 0.56 16 35 H 0.13 0.09 7.26 -2.91 -0.02 0.07 16 36 H 0.17 -1.20 6.88 -2.91 -0.02 -1.22 16 37 H 0.16 -0.44 8.06 -2.91 -0.02 -0.46 16 38 H 0.11 -0.73 7.96 -2.38 -0.02 -0.74 16 39 H 0.40 -2.98 8.74 -74.06 -0.65 -3.63 16 40 H -0.25 -0.28 7.11 99.48 0.71 0.42 16 41 H -0.28 -1.89 7.11 99.48 0.71 -1.18 16 42 H 0.16 -1.54 6.74 -2.91 -0.02 -1.56 16 43 H 0.16 -1.97 6.38 -2.91 -0.02 -1.99 16 44 H 0.09 0.05 6.16 -2.39 -0.01 0.04 16 45 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.08 -0.92 6.86 -2.38 -0.02 -0.93 16 48 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.05 -0.02 4.81 -2.38 -0.01 -0.03 16 51 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 52 H 0.07 -0.18 7.60 -2.38 -0.02 -0.20 16 53 H 0.07 0.57 6.16 -2.39 -0.01 0.55 16 54 H 0.07 0.27 6.43 -2.39 -0.02 0.26 16 Total: 0.00 -23.03 431.55 2.49 -20.54 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.14 Total: -15.45 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 4.94 Total: 13.49 kcal Atomic # 7 Polarization: 1.16 SS G_CDS: -1.71 Total: -0.55 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.64 Total: -18.48 kcal Atomic # 14 Polarization: -0.81 SS G_CDS: 2.12 Total: 1.31 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.10 Total: -0.86 kcal Total: -23.03 2.49 -20.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13308390.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.131 kcal (2) G-P(sol) polarization free energy of solvation -23.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds