Wall clock time and date at job start Sat Mar 6 2021 20:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34226 * 117.00301 * 2 1 4 4 O 1.20822 * 120.00033 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00138 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47294 * 324.99904 * 5 3 2 7 7 C 1.34777 * 119.99854 * 59.99616 * 6 5 3 8 8 O 1.21593 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.47537 * 120.00133 * 180.27865 * 7 6 5 10 10 C 1.40135 * 120.19429 * 179.45067 * 9 7 6 11 11 O 1.35650 * 120.14877 * 359.97438 * 10 9 7 12 12 C 1.38710 * 119.70308 * 179.72357 * 10 9 7 13 13 C 1.38055 * 120.07969 * 0.57437 * 12 10 9 14 14 C 1.50698 * 119.80695 * 179.71845 * 13 12 10 15 15 O 1.42898 * 109.47035 * 299.98216 * 14 13 12 16 16 Si 1.86301 * 109.47527 * 179.97438 * 14 13 12 17 17 C 1.38556 * 120.39276 * 359.69944 * 13 12 10 18 18 C 1.37787 * 120.29809 * 359.97438 * 17 13 12 19 19 C 1.53004 * 109.47362 * 204.99889 * 5 3 2 20 20 C 1.52994 * 109.47172 * 179.97438 * 19 5 3 21 21 C 1.53001 * 109.47173 * 60.00252 * 20 19 5 22 22 H 1.08997 * 109.47361 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46975 * 59.99525 * 21 20 19 24 24 C 1.53004 * 109.46866 * 299.99936 * 21 20 19 25 25 C 1.52994 * 109.47172 * 60.00063 * 24 21 20 26 26 H 1.09001 * 109.47647 * 300.00279 * 1 2 3 27 27 H 1.09003 * 109.47349 * 60.00250 * 1 2 3 28 28 H 1.09002 * 109.47451 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00410 * 240.00342 * 6 5 3 30 30 H 0.96699 * 114.00678 * 89.99941 * 11 10 9 31 31 H 1.07989 * 119.96171 * 180.31313 * 12 10 9 32 32 H 1.09005 * 109.47115 * 59.97733 * 14 13 12 33 33 H 0.96710 * 113.99872 * 299.99284 * 15 14 13 34 34 H 1.48498 * 110.00001 * 180.02562 * 16 14 13 35 35 H 1.48503 * 109.99452 * 301.31782 * 16 14 13 36 36 H 1.07995 * 119.84949 * 180.02562 * 17 13 12 37 37 H 1.08001 * 120.04550 * 180.02562 * 18 17 13 38 38 H 1.08998 * 109.46959 * 300.00360 * 19 5 3 39 39 H 1.09007 * 109.46621 * 60.00012 * 19 5 3 40 40 H 1.09001 * 109.47144 * 179.97438 * 20 19 5 41 41 H 1.08998 * 109.47717 * 300.00195 * 20 19 5 42 42 H 1.09001 * 109.47216 * 60.00590 * 23 21 20 43 43 H 1.09006 * 109.46826 * 180.02562 * 23 21 20 44 44 H 1.08997 * 109.47123 * 300.00203 * 23 21 20 45 45 H 1.09007 * 109.46621 * 179.97438 * 24 21 20 46 46 H 1.08998 * 109.46959 * 299.99404 * 24 21 20 47 47 H 1.09001 * 109.47144 * 180.02562 * 25 24 21 48 48 H 1.08998 * 109.47717 * 59.99805 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1129 0.1706 0.7933 7 6 3.8537 -1.1044 0.4415 8 8 3.1666 -1.3382 -0.5341 9 6 4.3990 -2.2163 1.2433 10 6 4.1225 -3.5434 0.8878 11 8 3.3515 -3.8120 -0.1954 12 6 4.6452 -4.5810 1.6455 13 6 5.4243 -4.3059 2.7515 14 6 5.9838 -5.4379 3.5740 15 8 4.9103 -6.2259 4.0925 16 14 6.9838 -4.7454 4.9851 17 6 5.6952 -2.9951 3.1097 18 6 5.1897 -1.9523 2.3644 19 6 4.0070 2.6071 0.6101 20 6 5.5349 2.6869 0.6113 21 6 6.0519 2.5874 -0.8253 22 1 7.1403 2.6447 -0.8246 23 6 5.4815 3.7406 -1.6535 24 6 5.6111 1.2550 -1.4348 25 6 4.0833 1.1753 -1.4360 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.6612 0.3571 1.5714 30 1 3.8490 -3.9036 -1.0195 31 1 4.4390 -5.6053 1.3724 32 1 6.6223 -6.0611 2.9478 33 1 4.3006 -5.7349 4.6603 34 1 7.5415 -5.8518 5.8035 35 1 8.0844 -3.8981 4.4596 36 1 6.3061 -2.7900 3.9763 37 1 5.4038 -0.9321 2.6470 38 1 3.6004 3.4286 0.0203 39 1 3.6391 2.6777 1.6337 40 1 5.8489 3.6363 1.0451 41 1 5.9412 1.8654 1.2012 42 1 5.7955 4.6898 -1.2193 43 1 5.8495 3.6695 -2.6771 44 1 4.3931 3.6837 -1.6543 45 1 5.9791 1.1844 -2.4585 46 1 6.0175 0.4335 -0.8449 47 1 3.7693 0.2259 -1.8698 48 1 3.6769 1.9968 -2.0260 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:07 Heat of formation + Delta-G solvation = -156.041922 kcal Electronic energy + Delta-G solvation = -33367.147864 eV Core-core repulsion = 28968.378612 eV Total energy + Delta-G solvation = -4398.769252 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.57475 -41.30407 -40.28906 -39.19146 -38.32989 -37.50117 -37.09681 -35.44783 -33.22965 -31.97155 -31.32573 -31.05317 -29.07609 -27.80255 -27.32087 -24.58273 -23.96341 -23.81279 -23.54741 -21.98708 -21.28130 -19.79376 -19.22365 -18.79402 -18.77435 -18.14791 -17.90281 -17.44468 -16.99551 -16.60828 -16.46636 -16.19353 -16.11761 -15.78203 -15.41930 -15.22175 -15.09771 -14.89606 -14.77752 -14.50920 -14.39494 -14.01243 -13.78058 -13.74873 -13.64128 -13.30939 -13.19583 -13.06240 -12.81772 -12.69267 -12.60196 -12.25046 -12.13135 -12.09073 -11.83720 -11.82129 -11.59623 -11.36216 -11.22531 -11.12452 -10.69963 -10.45425 -10.22854 -9.99517 -9.72054 -4.95644 -0.34364 0.19923 0.93946 1.31337 1.61980 1.67074 1.86653 1.98722 2.02039 2.65440 3.17830 3.26688 3.49107 3.54634 3.58692 3.63975 3.73931 3.83143 4.00449 4.01123 4.08973 4.14000 4.16341 4.20815 4.26999 4.32087 4.41856 4.42845 4.48197 4.57750 4.59805 4.64500 4.79257 4.82451 4.85945 4.89194 5.03835 5.07489 5.09295 5.11840 5.17349 5.21460 5.29262 5.29579 5.31895 5.36722 5.40882 5.55823 5.64499 6.46911 6.60180 6.74621 6.77019 7.24524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.331 6.331 3 C 0.449 3.551 4 O -0.536 6.536 5 C 0.206 3.794 6 N -0.706 5.706 7 C 0.557 3.443 8 O -0.514 6.514 9 C -0.173 4.173 10 C 0.156 3.844 11 O -0.495 6.495 12 C -0.142 4.142 13 C -0.074 4.074 14 C -0.085 4.085 15 O -0.557 6.557 16 Si 0.786 3.214 17 C -0.132 4.132 18 C -0.056 4.056 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.092 4.092 22 H 0.087 0.913 23 C -0.156 4.156 24 C -0.100 4.100 25 C -0.127 4.127 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.418 0.582 30 H 0.406 0.594 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.396 0.604 34 H -0.305 1.305 35 H -0.272 1.272 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 2.432 4.909 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.245 6.245 3 C 0.292 3.708 4 O -0.425 6.425 5 C 0.117 3.883 6 N -0.364 5.364 7 C 0.344 3.656 8 O -0.389 6.389 9 C -0.176 4.176 10 C 0.110 3.890 11 O -0.308 6.308 12 C -0.160 4.160 13 C -0.075 4.075 14 C -0.194 4.194 15 O -0.365 6.365 16 Si 0.691 3.309 17 C -0.149 4.149 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.110 4.110 22 H 0.106 0.894 23 C -0.214 4.214 24 C -0.138 4.138 25 C -0.166 4.166 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.258 0.742 30 H 0.265 0.735 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.246 0.754 34 H -0.234 1.234 35 H -0.198 1.198 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.694 2.146 4.609 7.634 hybrid contribution -0.304 -0.446 -1.096 1.222 sum 5.390 1.700 3.513 6.655 Atomic orbital electron populations 1.23409 0.76673 1.04627 1.02075 1.86906 1.23307 1.32017 1.82311 1.24857 0.93205 0.81493 0.71263 1.90656 1.67620 1.37321 1.46940 1.20164 0.83188 0.89777 0.95134 1.45798 1.54683 1.03761 1.32142 1.18214 0.79946 0.82763 0.84632 1.90823 1.36345 1.84071 1.27651 1.20401 1.04256 0.92695 1.00282 1.18690 0.89758 0.90736 0.89821 1.84732 1.35242 1.92801 1.18019 1.21318 0.98748 0.99323 0.96634 1.20542 0.96407 0.95584 0.94965 1.25423 0.95443 0.94505 1.04054 1.86496 1.41186 1.39361 1.69436 0.93608 0.79700 0.79577 0.77993 1.21220 1.01474 0.91047 1.01168 1.21498 0.93063 1.01300 0.91547 1.21822 0.98607 0.92645 1.02027 1.21619 0.91974 1.04171 0.96776 1.21154 1.00943 0.94001 0.94930 0.89443 1.21983 1.00865 0.98490 1.00019 1.21455 0.92403 0.98186 1.01747 1.21935 0.98474 1.03374 0.92773 0.91906 0.92401 0.86857 0.74223 0.73483 0.85140 0.87300 0.75364 1.23372 1.19801 0.82103 0.81543 0.89628 0.89845 0.89341 0.89669 0.91924 0.92870 0.93203 0.91356 0.91119 0.91002 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 113.37 1.20 1.36 16 2 O -0.33 -3.49 6.72 -43.62 -0.29 -3.79 16 3 C 0.45 4.04 6.71 71.24 0.48 4.51 16 4 O -0.54 -7.21 15.84 21.98 0.35 -6.86 16 5 C 0.21 0.25 0.63 2.86 0.00 0.26 16 6 N -0.71 1.76 3.98 -429.44 -1.71 0.05 16 7 C 0.56 1.64 6.70 86.70 0.58 2.22 16 8 O -0.51 -5.14 10.40 26.50 0.28 -4.86 16 9 C -0.17 -0.02 5.89 -20.01 -0.12 -0.14 16 10 C 0.16 0.48 6.72 22.84 0.15 0.63 16 11 O -0.50 -2.90 11.58 -68.73 -0.80 -3.70 16 12 C -0.14 -0.12 9.53 22.34 0.21 0.09 16 13 C -0.07 0.24 5.39 -19.83 -0.11 0.13 16 14 C -0.09 0.30 2.81 71.24 0.20 0.50 16 15 O -0.56 0.80 12.76 -148.98 -1.90 -1.10 16 16 Si 0.79 -5.01 29.77 68.60 2.04 -2.97 16 17 C -0.13 0.95 8.65 22.24 0.19 1.14 16 18 C -0.06 0.38 9.54 22.52 0.21 0.60 16 19 C -0.11 0.34 4.04 30.59 0.12 0.46 16 20 C -0.11 0.87 5.28 30.59 0.16 1.03 16 21 C -0.09 0.52 3.20 -10.79 -0.03 0.49 16 22 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 23 C -0.16 0.52 8.50 71.98 0.61 1.13 16 24 C -0.10 0.30 5.29 30.59 0.16 0.46 16 25 C -0.13 -0.25 4.23 30.59 0.13 -0.12 16 26 H 0.06 0.33 8.13 -2.39 -0.02 0.31 16 27 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.42 -3.93 5.35 -92.71 -0.50 -4.42 16 30 H 0.41 -0.32 9.06 -74.06 -0.67 -0.99 16 31 H 0.13 0.25 8.06 -2.92 -0.02 0.23 16 32 H 0.11 -0.24 7.96 -2.38 -0.02 -0.26 16 33 H 0.40 -3.74 8.70 -74.05 -0.64 -4.38 16 34 H -0.31 -0.76 7.11 99.48 0.71 -0.05 16 35 H -0.27 0.96 7.11 99.48 0.71 1.66 16 36 H 0.16 -2.04 4.85 -2.91 -0.01 -2.05 16 37 H 0.17 -2.40 6.40 -2.91 -0.02 -2.41 16 38 H 0.09 0.02 6.16 -2.39 -0.01 0.00 16 39 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 40 H 0.09 -0.84 8.14 -2.39 -0.02 -0.85 16 41 H 0.08 -1.01 6.86 -2.39 -0.02 -1.03 16 42 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 44 H 0.05 -0.04 4.81 -2.39 -0.01 -0.05 16 45 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 46 H 0.07 -0.26 7.60 -2.39 -0.02 -0.28 16 47 H 0.07 0.51 6.16 -2.39 -0.01 0.49 16 48 H 0.07 0.24 6.43 -2.39 -0.02 0.22 16 Total: 0.00 -24.64 370.58 1.39 -23.26 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: -0.74 Total: -14.79 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 4.16 Total: 14.76 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -1.71 Total: 0.05 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -2.37 Total: -20.31 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.04 Total: -2.97 kcal Total: -24.64 1.39 -23.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.786 kcal (2) G-P(sol) polarization free energy of solvation -24.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds