Wall clock time and date at job start Sat Mar 6 2021 20:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00331 * 2 1 4 4 O 1.20827 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00115 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47209 * 324.99950 * 5 3 2 7 7 C 1.34777 * 119.99746 * 60.00234 * 6 5 3 8 8 O 1.21609 * 120.00421 * 359.97438 * 7 6 5 9 9 C 1.47383 * 119.99517 * 180.02562 * 7 6 5 10 10 C 1.36411 * 127.19269 * 359.68372 * 9 7 6 11 11 O 1.33655 * 108.39867 * 179.84078 * 10 9 7 12 12 C 1.34223 * 110.90251 * 0.44128 * 11 10 9 13 13 C 1.50699 * 125.43166 * 179.72671 * 12 11 10 14 14 O 1.42899 * 109.47164 * 245.00133 * 13 12 11 15 15 Si 1.86300 * 109.47626 * 5.00568 * 13 12 11 16 16 C 1.34176 * 109.12627 * 359.73305 * 12 11 10 17 17 C 1.52996 * 109.46990 * 204.99677 * 5 3 2 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 5 3 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 5 20 20 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 22 22 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 19 18 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46798 * 300.00490 * 1 2 3 26 26 H 1.09004 * 109.46995 * 60.00139 * 1 2 3 27 27 H 0.97003 * 119.99532 * 240.00341 * 6 5 3 28 28 H 1.08003 * 125.80127 * 359.97438 * 10 9 7 29 29 H 1.09008 * 109.46668 * 125.00518 * 13 12 11 30 30 H 0.96698 * 113.99782 * 180.02562 * 14 13 12 31 31 H 1.48501 * 109.99857 * 299.99961 * 15 13 12 32 32 H 1.48499 * 109.99895 * 61.31466 * 15 13 12 33 33 H 1.07998 * 127.02396 * 180.02562 * 16 12 11 34 34 H 1.09004 * 109.47368 * 60.00232 * 17 5 3 35 35 H 1.09001 * 109.47372 * 300.00388 * 17 5 3 36 36 H 1.09002 * 109.47398 * 180.02562 * 18 17 5 37 37 H 1.09001 * 109.47194 * 300.00476 * 18 17 5 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 19 18 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 19 18 40 40 H 1.09001 * 109.47362 * 300.00732 * 21 19 18 41 41 H 1.09001 * 109.47002 * 299.99574 * 22 19 18 42 42 H 1.09000 * 109.47050 * 179.97438 * 22 19 18 43 43 H 1.09002 * 109.47045 * 180.02562 * 23 22 19 44 44 H 1.09001 * 109.47375 * 59.99966 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1129 0.1706 0.7933 7 6 3.8538 -1.1043 0.4413 8 8 3.1660 -1.3382 -0.5339 9 6 4.4032 -2.2151 1.2392 10 6 5.1905 -2.1225 2.3493 11 8 5.4691 -3.3590 2.7732 12 6 4.9011 -4.2778 1.9765 13 6 5.0086 -5.7709 2.1499 14 8 5.7173 -6.3293 1.0418 15 14 5.9251 -6.1487 3.7272 16 6 4.2224 -3.6546 1.0011 17 6 4.0070 2.6072 0.6100 18 6 5.5349 2.6875 0.6101 19 6 6.0508 2.5886 -0.8269 20 1 7.1393 2.6454 -0.8270 21 6 5.4795 3.7417 -1.6544 22 6 5.6101 1.2562 -1.4364 23 6 4.0822 1.1759 -1.4364 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.6612 0.3572 1.5714 28 1 5.5293 -1.2057 2.8089 29 1 4.0094 -6.2039 2.1976 30 1 5.8239 -7.2893 1.0866 31 1 7.2890 -5.5635 3.6748 32 1 5.1818 -5.6007 4.8902 33 1 3.6582 -4.1161 0.2042 34 1 3.6391 2.6779 1.6337 35 1 3.6003 3.4287 0.0203 36 1 5.8489 3.6366 1.0447 37 1 5.9419 1.8660 1.1996 38 1 5.7935 4.6909 -1.2202 39 1 5.8467 3.6710 -2.6783 40 1 4.3910 3.6845 -1.6544 41 1 6.0172 0.4347 -0.8469 42 1 5.9773 1.1859 -2.4603 43 1 3.7683 0.2265 -1.8703 44 1 3.6752 1.9975 -2.0259 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:28 Heat of formation + Delta-G solvation = -124.927943 kcal Electronic energy + Delta-G solvation = -29449.861225 eV Core-core repulsion = 25336.204936 eV Total energy + Delta-G solvation = -4113.656289 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.82620 -42.52886 -40.59496 -39.37333 -37.87377 -37.56542 -35.58888 -34.16585 -32.53215 -32.02698 -31.23796 -29.11602 -27.80182 -26.65678 -25.28924 -24.36866 -23.92583 -22.33573 -21.75912 -20.95118 -19.74122 -18.97690 -18.77683 -18.63204 -18.12803 -17.53934 -17.39113 -17.13071 -16.77880 -16.34466 -15.92145 -15.75949 -15.54892 -15.22325 -15.01817 -14.81279 -14.56216 -14.25396 -14.20889 -14.05291 -13.86346 -13.73171 -13.62971 -13.35729 -13.11086 -12.73823 -12.70325 -12.64912 -12.16106 -12.15617 -11.89987 -11.87420 -11.45943 -11.29725 -11.21259 -10.98822 -10.90887 -10.46296 -10.32686 -9.85154 -5.02543 0.17943 0.75812 0.88181 1.19699 1.56453 1.60325 1.70423 1.88392 2.02774 2.27608 3.18092 3.34408 3.45571 3.50272 3.58630 3.71695 3.83850 3.95040 3.97150 4.03760 4.12712 4.17426 4.20220 4.27082 4.36053 4.37007 4.45828 4.46958 4.53584 4.55832 4.76010 4.79686 4.81183 4.85064 4.99111 5.02705 5.05945 5.08808 5.13321 5.23371 5.25665 5.31539 5.36025 5.51869 5.75829 6.36167 6.54011 6.83816 7.12034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.205 3.795 6 N -0.704 5.704 7 C 0.590 3.410 8 O -0.530 6.530 9 C -0.254 4.254 10 C 0.049 3.951 11 O -0.186 6.186 12 C -0.031 4.031 13 C -0.047 4.047 14 O -0.563 6.563 15 Si 0.814 3.186 16 C -0.139 4.139 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.092 4.092 20 H 0.087 0.913 21 C -0.156 4.156 22 C -0.102 4.102 23 C -0.128 4.128 24 H 0.116 0.884 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.418 0.582 28 H 0.259 0.741 29 H 0.119 0.881 30 H 0.413 0.587 31 H -0.301 1.301 32 H -0.290 1.290 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -3.269 4.814 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.249 6.249 3 C 0.293 3.707 4 O -0.422 6.422 5 C 0.117 3.883 6 N -0.361 5.361 7 C 0.378 3.622 8 O -0.407 6.407 9 C -0.259 4.259 10 C -0.020 4.020 11 O -0.083 6.083 12 C -0.078 4.078 13 C -0.155 4.155 14 O -0.375 6.375 15 Si 0.718 3.282 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.110 4.110 20 H 0.105 0.895 21 C -0.213 4.213 22 C -0.139 4.139 23 C -0.167 4.167 24 H 0.135 0.865 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.258 0.742 28 H 0.275 0.725 29 H 0.136 0.864 30 H 0.266 0.734 31 H -0.229 1.229 32 H -0.217 1.217 33 H 0.172 0.828 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.992 -2.334 4.856 6.705 hybrid contribution -0.902 0.689 -0.522 1.249 sum 3.090 -1.645 4.334 5.571 Atomic orbital electron populations 1.23452 0.76430 1.04852 1.02191 1.86897 1.23548 1.32076 1.82356 1.24767 0.93076 0.81535 0.71352 1.90659 1.67520 1.37204 1.46810 1.20211 0.83399 0.89651 0.95080 1.45687 1.54686 1.03571 1.32139 1.17292 0.79181 0.82012 0.83667 1.90798 1.37612 1.84262 1.28018 1.21486 1.08838 0.94092 1.01474 1.25300 0.95744 0.87059 0.93924 1.83732 1.60149 1.15698 1.48715 1.21696 1.00511 0.91728 0.93912 1.24117 1.04166 0.85043 1.02199 1.86420 1.77684 1.29189 1.44189 0.94027 0.75260 0.87752 0.71134 1.22574 1.02182 0.91316 0.99787 1.21826 0.98560 0.92500 1.02102 1.21624 0.92040 1.04176 0.96759 1.21151 1.00963 0.93930 0.94950 0.89467 1.21978 1.00900 0.98399 1.00025 1.21466 0.92467 0.98214 1.01803 1.21948 0.98488 1.03402 0.92830 0.86541 0.91835 0.92298 0.74246 0.72535 0.86394 0.73395 1.22860 1.21711 0.82782 0.89729 0.89323 0.89168 0.89879 0.91780 0.92808 0.93100 0.91502 0.91298 0.91277 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.56 113.37 1.20 1.35 16 2 O -0.33 -3.76 6.72 -43.67 -0.29 -4.05 16 3 C 0.45 4.44 6.71 71.24 0.48 4.92 16 4 O -0.53 -7.40 15.84 21.96 0.35 -7.05 16 5 C 0.20 0.56 0.63 2.86 0.00 0.56 16 6 N -0.70 0.34 4.03 -429.60 -1.73 -1.39 16 7 C 0.59 3.58 6.75 86.65 0.58 4.16 16 8 O -0.53 -7.25 12.23 19.38 0.24 -7.02 16 9 C -0.25 -1.09 6.31 -18.99 -0.12 -1.21 16 10 C 0.05 -0.08 11.61 67.39 0.78 0.70 16 11 O -0.19 -0.69 8.90 4.37 0.04 -0.65 16 12 C -0.03 -0.15 6.22 24.76 0.15 0.01 16 13 C -0.05 0.08 2.96 71.24 0.21 0.30 16 14 O -0.56 0.83 12.86 -148.98 -1.92 -1.09 16 15 Si 0.81 -2.93 32.09 68.60 2.20 -0.73 16 16 C -0.14 -0.97 10.90 23.65 0.26 -0.71 16 17 C -0.11 0.22 4.04 30.59 0.12 0.35 16 18 C -0.11 0.73 5.28 30.59 0.16 0.90 16 19 C -0.09 0.38 3.20 -10.79 -0.03 0.35 16 20 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 21 C -0.16 0.37 8.50 71.98 0.61 0.98 16 22 C -0.10 0.07 5.29 30.60 0.16 0.23 16 23 C -0.13 -0.50 4.23 30.59 0.13 -0.37 16 24 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 26 H 0.06 0.39 8.13 -2.38 -0.02 0.37 16 27 H 0.42 -3.36 6.29 -92.71 -0.58 -3.94 16 28 H 0.26 -3.35 7.47 -2.91 -0.02 -3.38 16 29 H 0.12 -0.80 7.96 -2.38 -0.02 -0.82 16 30 H 0.41 -5.39 8.74 -74.06 -0.65 -6.03 16 31 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 32 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.09 0.07 6.16 -2.39 -0.01 0.06 16 36 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.08 -0.86 6.86 -2.39 -0.02 -0.87 16 38 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.05 0.00 4.81 -2.39 -0.01 -0.01 16 41 H 0.07 -0.05 7.61 -2.39 -0.02 -0.06 16 42 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.07 0.67 6.16 -2.39 -0.01 0.65 16 44 H 0.08 0.34 6.43 -2.39 -0.02 0.33 16 Total: 0.00 -27.62 349.86 3.44 -24.18 By element: Atomic # 1 Polarization: -14.56 SS G_CDS: -0.15 Total: -14.71 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 4.70 Total: 12.51 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -1.73 Total: -1.39 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.59 Total: -19.86 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.20 Total: -0.73 kcal Total: -27.62 3.44 -24.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.748 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds