Wall clock time and date at job start Sat Mar 6 2021 20:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00150 * 2 1 4 4 O 1.20823 * 119.99846 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99791 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47497 * 34.99875 * 5 3 2 7 7 C 1.34776 * 119.99932 * 300.00206 * 6 5 3 8 8 O 1.21697 * 119.99687 * 359.97438 * 7 6 5 9 9 C 1.46669 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.37877 * 126.23315 * 179.97438 * 9 7 6 11 11 C 1.50703 * 126.45461 * 359.97438 * 10 9 7 12 12 C 1.39832 * 107.08698 * 180.25077 * 10 9 7 13 13 C 1.35453 * 107.86731 * 359.62562 * 12 10 9 14 14 C 1.50699 * 125.56716 * 180.11916 * 13 12 10 15 15 O 1.42907 * 109.46714 * 120.30250 * 14 13 12 16 16 Si 1.86294 * 109.46913 * 0.30502 * 14 13 12 17 17 N 1.35536 * 108.86889 * 0.38027 * 13 12 10 18 18 C 1.53001 * 109.47509 * 274.99890 * 5 3 2 19 19 C 1.53001 * 109.47498 * 180.02562 * 18 5 3 20 20 C 1.53001 * 109.46999 * 59.99962 * 19 18 5 21 21 H 1.09001 * 109.46788 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47038 * 60.00279 * 20 19 18 23 23 C 1.53000 * 109.47082 * 299.99768 * 20 19 18 24 24 C 1.53003 * 109.47049 * 155.00148 * 5 3 2 25 25 H 1.09004 * 109.47594 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47371 * 300.00055 * 1 2 3 27 27 H 1.09004 * 109.47319 * 60.00262 * 1 2 3 28 28 H 0.96998 * 119.99895 * 120.00046 * 6 5 3 29 29 H 1.09002 * 109.47152 * 89.99958 * 11 10 9 30 30 H 1.09001 * 109.46980 * 330.00059 * 11 10 9 31 31 H 1.09004 * 109.47113 * 210.00040 * 11 10 9 32 32 H 1.08006 * 126.06737 * 179.77601 * 12 10 9 33 33 H 1.08997 * 109.46952 * 240.29921 * 14 13 12 34 34 H 0.96702 * 113.99222 * 180.02562 * 15 14 13 35 35 H 1.48499 * 109.99986 * 298.67508 * 16 14 13 36 36 H 1.48500 * 110.00342 * 59.99729 * 16 14 13 37 37 H 0.97001 * 125.68073 * 179.76134 * 17 13 12 38 38 H 1.09008 * 109.46754 * 300.00571 * 18 5 3 39 39 H 1.09001 * 109.46933 * 59.99859 * 18 5 3 40 40 H 1.08998 * 109.46805 * 299.99868 * 19 18 5 41 41 H 1.08997 * 109.46747 * 180.02562 * 19 18 5 42 42 H 1.09001 * 109.47090 * 299.99520 * 22 20 19 43 43 H 1.08997 * 109.47582 * 60.00206 * 22 20 19 44 44 H 1.08998 * 109.46800 * 180.02562 * 22 20 19 45 45 H 1.08998 * 109.47414 * 300.00517 * 23 20 19 46 46 H 1.09003 * 109.46662 * 180.02562 * 23 20 19 47 47 H 1.09003 * 109.46914 * 299.99895 * 24 5 3 48 48 H 1.08998 * 109.47349 * 59.99950 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1135 0.1702 -0.7912 7 6 3.8541 -1.1046 -0.4390 8 8 3.1656 -1.3381 0.5370 9 6 4.4015 -2.2103 -1.2320 10 6 4.2192 -3.5554 -0.9897 11 6 3.4230 -4.1625 0.1367 12 6 4.9176 -4.2500 -1.9822 13 6 5.4945 -3.3375 -2.8004 14 6 6.3407 -3.6531 -4.0068 15 8 5.7390 -3.0855 -5.1722 16 14 6.4673 -5.5005 -4.2104 17 7 5.1912 -2.0944 -2.3535 18 6 4.0817 1.1762 1.4378 19 6 5.6095 1.2568 1.4384 20 6 6.0502 2.5892 0.8289 21 1 7.1387 2.6468 0.8298 22 6 5.4783 3.7423 1.6560 23 6 5.5349 2.6877 -0.6084 24 6 4.0075 2.6069 -0.6091 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.6625 0.3564 -1.5689 29 1 2.3900 -4.3012 -0.1822 30 1 3.4505 -3.4980 1.0003 31 1 3.8527 -5.1272 0.4066 32 1 4.9832 -5.3235 -2.0805 33 1 7.3374 -3.2332 -3.8713 34 1 6.2309 -3.2499 -5.9883 35 1 7.1203 -6.0993 -3.0186 36 1 5.1148 -6.0850 -4.3959 37 1 5.4822 -1.2616 -2.7569 38 1 3.6745 1.9980 2.0269 39 1 3.7673 0.2272 1.8722 40 1 6.0169 0.4352 0.8493 41 1 5.9766 1.1861 2.4623 42 1 4.3898 3.6849 1.6555 43 1 5.8455 3.6721 2.6798 44 1 5.7919 4.6914 1.2214 45 1 5.9423 1.8661 -1.1976 46 1 5.8493 3.6367 -1.0427 47 1 3.6403 2.6771 -1.6331 48 1 3.6004 3.4287 -0.0200 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_13940406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:31 Heat of formation + Delta-G solvation = -104.951588 kcal Electronic energy + Delta-G solvation = -31901.698417 eV Core-core repulsion = 27731.089411 eV Total energy + Delta-G solvation = -4170.609006 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.89401 -42.25204 -40.51036 -39.31860 -37.65514 -37.55008 -35.70534 -33.69036 -32.61133 -32.04202 -31.20779 -29.12519 -28.29142 -27.82411 -26.79010 -24.57546 -23.99938 -23.03881 -21.71245 -21.48221 -20.56014 -19.62017 -19.50103 -18.87605 -18.42720 -18.05818 -17.50515 -17.00796 -16.71735 -16.49666 -15.82448 -15.73812 -15.56290 -15.27131 -15.08947 -14.98424 -14.65539 -14.58548 -14.47440 -14.07754 -13.90161 -13.81184 -13.69345 -13.67125 -13.38754 -13.32757 -13.12360 -13.06748 -12.75035 -12.66901 -12.53616 -12.17314 -12.00679 -11.90604 -11.87378 -11.45784 -11.31867 -11.20546 -10.88572 -10.45586 -10.37108 -9.95501 -9.25669 -4.92985 0.24982 0.86512 1.21005 1.39435 1.59473 1.75184 1.83068 2.03621 2.11863 2.25931 3.19647 3.30838 3.46608 3.56555 3.72321 3.83661 3.93227 3.93869 3.98944 4.02088 4.12516 4.12632 4.17496 4.19745 4.34446 4.40143 4.42001 4.51876 4.55122 4.55831 4.66873 4.73230 4.78896 4.80088 4.83647 4.96565 4.99054 5.03627 5.05242 5.08747 5.20007 5.23978 5.25093 5.29722 5.33673 5.50050 5.52332 5.71463 6.21498 6.39426 6.53117 6.85492 7.04803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.206 3.794 6 N -0.710 5.710 7 C 0.592 3.408 8 O -0.511 6.511 9 C -0.059 4.059 10 C -0.085 4.085 11 C -0.087 4.087 12 C -0.234 4.234 13 C 0.072 3.928 14 C -0.060 4.060 15 O -0.565 6.565 16 Si 0.807 3.193 17 N -0.508 5.508 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.091 4.091 21 H 0.087 0.913 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.113 4.113 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.412 0.588 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.410 0.590 35 H -0.289 1.289 36 H -0.303 1.303 37 H 0.430 0.570 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 0.046 -6.026 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.293 3.707 4 O -0.422 6.422 5 C 0.118 3.882 6 N -0.366 5.366 7 C 0.380 3.620 8 O -0.386 6.386 9 C -0.173 4.173 10 C -0.094 4.094 11 C -0.144 4.144 12 C -0.258 4.258 13 C -0.047 4.047 14 C -0.170 4.170 15 O -0.376 6.376 16 Si 0.712 3.288 17 N -0.106 5.106 18 C -0.166 4.166 19 C -0.139 4.139 20 C -0.109 4.109 21 H 0.105 0.895 22 C -0.213 4.213 23 C -0.145 4.145 24 C -0.151 4.151 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.262 0.738 35 H -0.216 1.216 36 H -0.231 1.231 37 H 0.271 0.729 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.887 -0.220 -4.618 8.295 hybrid contribution -0.622 0.800 0.064 1.015 sum 6.266 0.580 -4.555 7.768 Atomic orbital electron populations 1.23445 0.76425 1.04861 1.02130 1.86888 1.23520 1.31966 1.82324 1.24737 0.93028 0.81590 0.71377 1.90660 1.67501 1.37240 1.46808 1.20214 0.83444 0.89401 0.95189 1.45756 1.54758 1.03975 1.32078 1.16976 0.79616 0.81531 0.83836 1.90828 1.37069 1.83576 1.27129 1.20116 1.07476 0.94601 0.95062 1.20081 0.99935 0.91064 0.98293 1.20313 0.98282 1.00429 0.95369 1.20586 1.06551 0.98813 0.99854 1.20378 1.02370 0.84304 0.97655 1.24609 0.96487 1.12922 0.82975 1.86424 1.54160 1.79270 1.17753 0.94317 0.79610 0.70478 0.84392 1.41781 1.38878 1.08472 1.21462 1.21956 0.98412 1.03684 0.92534 1.21455 0.92525 0.98026 1.01859 1.21146 1.00959 0.94092 0.94752 0.89452 1.21974 1.00904 0.98330 1.00072 1.21601 0.92039 1.03963 0.96917 1.21819 0.98577 0.92738 1.01950 0.86518 0.92150 0.92090 0.75042 0.91604 0.90963 0.91059 0.84330 0.87387 0.73777 1.21591 1.23056 0.72925 0.90383 0.90841 0.91691 0.91055 0.93095 0.92656 0.91828 0.90361 0.89176 0.90128 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.56 113.37 1.20 1.36 16 2 O -0.33 -3.66 6.72 -43.65 -0.29 -3.96 16 3 C 0.45 4.42 6.71 71.23 0.48 4.90 16 4 O -0.53 -7.45 15.84 21.97 0.35 -7.10 16 5 C 0.21 0.56 0.63 2.86 0.00 0.56 16 6 N -0.71 -0.12 4.03 -430.25 -1.73 -1.85 16 7 C 0.59 3.60 6.72 86.44 0.58 4.18 16 8 O -0.51 -6.01 10.05 19.09 0.19 -5.82 16 9 C -0.06 -0.33 7.06 40.35 0.28 -0.05 16 10 C -0.09 -0.71 6.21 -19.56 -0.12 -0.83 16 11 C -0.09 -0.65 9.83 71.24 0.70 0.05 16 12 C -0.23 -1.54 9.27 22.01 0.20 -1.34 16 13 C 0.07 0.16 6.51 41.34 0.27 0.43 16 14 C -0.06 0.30 3.07 71.24 0.22 0.52 16 15 O -0.57 3.03 12.86 -148.98 -1.92 1.11 16 16 Si 0.81 -3.83 30.54 68.60 2.10 -1.74 16 17 N -0.51 -0.12 5.99 -171.93 -1.03 -1.15 16 18 C -0.13 -0.40 4.23 30.59 0.13 -0.27 16 19 C -0.10 0.14 5.29 30.59 0.16 0.30 16 20 C -0.09 0.41 3.19 -10.80 -0.03 0.38 16 21 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 22 C -0.16 0.44 8.50 71.98 0.61 1.05 16 23 C -0.11 0.70 5.28 30.58 0.16 0.86 16 24 C -0.11 0.18 4.03 30.58 0.12 0.30 16 25 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 27 H 0.06 0.35 8.13 -2.39 -0.02 0.33 16 28 H 0.41 -2.43 6.45 -92.71 -0.60 -3.03 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.70 6.49 -2.39 -0.02 0.69 16 31 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.14 0.82 6.17 -2.91 -0.02 0.80 16 33 H 0.11 -1.15 7.96 -2.39 -0.02 -1.17 16 34 H 0.41 -6.50 8.74 -74.06 -0.65 -7.15 16 35 H -0.29 -0.38 7.11 99.48 0.71 0.33 16 36 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 37 H 0.43 -2.69 8.19 -92.71 -0.76 -3.45 16 38 H 0.08 0.29 6.43 -2.38 -0.02 0.27 16 39 H 0.07 0.60 6.16 -2.39 -0.01 0.59 16 40 H 0.06 -0.08 7.60 -2.39 -0.02 -0.10 16 41 H 0.07 -0.08 8.14 -2.39 -0.02 -0.09 16 42 H 0.05 -0.02 4.81 -2.39 -0.01 -0.03 16 43 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.08 -0.75 6.86 -2.39 -0.02 -0.76 16 46 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.09 0.08 6.16 -2.39 -0.01 0.07 16 Total: 0.00 -23.56 368.89 1.68 -21.88 By element: Atomic # 1 Polarization: -12.85 SS G_CDS: -0.95 Total: -13.79 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.97 Total: 12.42 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -2.76 Total: -3.00 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.67 Total: -15.76 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.10 Total: -1.74 kcal Total: -23.56 1.68 -21.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_13940406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.072 kcal (2) G-P(sol) polarization free energy of solvation -23.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds