Wall clock time and date at job start Sat Mar 6 2021 20:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00366 * 2 1 4 4 O 1.20825 * 119.99684 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00662 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46851 * 324.99925 * 5 3 2 7 7 C 1.34770 * 119.99912 * 59.99645 * 6 5 3 8 8 O 1.21278 * 120.00253 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99761 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.47318 * 180.02562 * 9 7 6 11 11 C 1.34854 * 125.89261 * 274.69115 * 10 9 7 12 12 C 1.40892 * 107.41775 * 179.88245 * 11 10 9 13 13 C 1.34854 * 107.41595 * 0.37731 * 12 11 10 14 14 C 1.50703 * 125.88804 * 179.73298 * 13 12 11 15 15 O 1.42904 * 109.46741 * 245.04182 * 14 13 12 16 16 Si 1.86291 * 109.47201 * 5.04284 * 14 13 12 17 17 N 1.36341 * 108.21918 * 359.77099 * 13 12 11 18 18 C 1.52997 * 109.47238 * 204.99882 * 5 3 2 19 19 C 1.53006 * 109.47164 * 179.97438 * 18 5 3 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 5 21 21 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 23 23 C 1.52997 * 109.47592 * 300.00035 * 20 19 18 24 24 C 1.52996 * 109.47165 * 60.00300 * 23 20 19 25 25 H 1.08998 * 109.47055 * 59.99863 * 1 2 3 26 26 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47275 * 300.00618 * 1 2 3 28 28 H 0.97000 * 119.99609 * 240.00399 * 6 5 3 29 29 H 1.09002 * 109.47152 * 300.00159 * 9 7 6 30 30 H 1.09001 * 109.47438 * 60.00333 * 9 7 6 31 31 H 1.08001 * 126.29020 * 0.02932 * 11 10 9 32 32 H 1.08004 * 126.29125 * 180.17130 * 12 11 10 33 33 H 1.08994 * 109.47132 * 125.04371 * 14 13 12 34 34 H 0.96702 * 113.99622 * 60.01017 * 15 14 13 35 35 H 1.48506 * 110.00303 * 58.68311 * 16 14 13 36 36 H 1.48507 * 110.00299 * 180.02562 * 16 14 13 37 37 H 0.97003 * 125.63261 * 180.02562 * 17 13 12 38 38 H 1.09001 * 109.46922 * 59.99800 * 18 5 3 39 39 H 1.09000 * 109.47140 * 299.99500 * 18 5 3 40 40 H 1.08993 * 109.46955 * 180.02562 * 19 18 5 41 41 H 1.09000 * 109.47050 * 300.00004 * 19 18 5 42 42 H 1.09000 * 109.47611 * 59.99933 * 22 20 19 43 43 H 1.09001 * 109.47289 * 179.97438 * 22 20 19 44 44 H 1.09002 * 109.47153 * 299.99445 * 22 20 19 45 45 H 1.09000 * 109.47140 * 300.00346 * 23 20 19 46 46 H 1.09001 * 109.47375 * 180.02562 * 23 20 19 47 47 H 1.08992 * 109.47534 * 180.02562 * 24 23 20 48 48 H 1.08996 * 109.47134 * 59.99508 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1135 0.1704 0.7913 7 6 3.8541 -1.1043 0.4391 8 8 3.1674 -1.3372 -0.5329 9 6 4.4166 -2.2405 1.2540 10 6 3.9827 -3.5526 0.6532 11 6 2.8198 -4.1891 0.9000 12 6 2.8161 -5.3725 0.1354 13 6 3.9806 -5.4182 -0.5431 14 6 4.4118 -6.5127 -1.4850 15 8 5.5554 -7.1803 -0.9477 16 14 3.0214 -7.7345 -1.6954 17 7 4.7008 -4.3039 -0.2294 18 6 4.0074 2.6071 0.6091 19 6 5.5354 2.6869 0.6091 20 6 6.0511 2.5880 -0.8280 21 1 7.1397 2.6444 -0.8280 22 6 5.4801 3.7414 -1.6552 23 6 5.6100 1.2559 -1.4376 24 6 4.0822 1.1760 -1.4376 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.6624 0.3567 1.5690 29 1 5.5051 -2.1835 1.2541 30 1 4.0490 -2.1701 2.2778 31 1 2.0344 -3.8523 1.5605 32 1 2.0272 -6.1094 0.1018 33 1 4.6650 -6.0803 -2.4529 34 1 5.4024 -7.5900 -0.0853 35 1 1.8160 -7.0464 -2.2237 36 1 3.4342 -8.8194 -2.6217 37 1 5.5788 -4.0821 -0.5770 38 1 3.6402 2.6773 1.6330 39 1 3.6003 3.4288 0.0199 40 1 5.8496 3.6357 1.0438 41 1 5.9422 1.8652 1.1985 42 1 5.7944 4.6905 -1.2210 43 1 5.8479 3.6712 -2.6789 44 1 4.3916 3.6845 -1.6552 45 1 6.0168 0.4341 -0.8482 46 1 5.9779 1.1852 -2.4613 47 1 3.7679 0.2268 -1.8715 48 1 3.6754 1.9977 -2.0269 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11976204_14644196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:36 Heat of formation + Delta-G solvation = -104.767264 kcal Electronic energy + Delta-G solvation = -31408.374636 eV Core-core repulsion = 27237.773623 eV Total energy + Delta-G solvation = -4170.601013 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51148 -42.09665 -40.36703 -39.35982 -37.66059 -37.22928 -35.44508 -33.37773 -32.07257 -31.85503 -31.62947 -29.25345 -28.88539 -27.77320 -25.26757 -24.37102 -23.99685 -22.40345 -21.32793 -21.25411 -20.91702 -19.62896 -18.89833 -18.63462 -18.37399 -17.60970 -17.26251 -16.95725 -16.78409 -16.28972 -16.13163 -15.63996 -15.58377 -15.18776 -15.00989 -14.80497 -14.50605 -14.39196 -14.30239 -14.02839 -13.97406 -13.75987 -13.73887 -13.64166 -13.49116 -13.33765 -12.93418 -12.77960 -12.74120 -12.63311 -12.21373 -11.99510 -11.89073 -11.77472 -11.56145 -11.48854 -11.36202 -11.13288 -10.64092 -10.57309 -10.14464 -9.68758 -8.87287 -4.95290 1.10277 1.26225 1.29463 1.64450 1.74467 1.88339 1.93921 2.01471 2.26214 2.52567 3.27924 3.47856 3.50056 3.61275 3.67309 3.84063 3.85571 3.88689 4.00170 4.02079 4.07358 4.15797 4.30914 4.31833 4.35901 4.39214 4.40547 4.44349 4.49534 4.61506 4.66981 4.70480 4.76478 4.77705 4.85018 4.88296 4.96864 5.01176 5.05023 5.15767 5.23507 5.31935 5.34512 5.38614 5.40829 5.55510 6.08476 6.22577 6.39059 6.54512 6.68321 6.85433 7.26703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.456 3.544 4 O -0.509 6.509 5 C 0.200 3.800 6 N -0.725 5.725 7 C 0.509 3.491 8 O -0.484 6.484 9 C -0.070 4.070 10 C 0.039 3.961 11 C -0.170 4.170 12 C -0.187 4.187 13 C -0.010 4.010 14 C -0.049 4.049 15 O -0.547 6.547 16 Si 0.719 3.281 17 N -0.535 5.535 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.095 4.095 21 H 0.075 0.925 22 C -0.155 4.155 23 C -0.105 4.105 24 C -0.132 4.132 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.405 0.595 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.381 0.619 35 H -0.255 1.255 36 H -0.256 1.256 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -0.504 4.781 5.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C 0.297 3.703 4 O -0.396 6.396 5 C 0.112 3.888 6 N -0.382 5.382 7 C 0.295 3.705 8 O -0.356 6.356 9 C -0.110 4.110 10 C -0.075 4.075 11 C -0.195 4.195 12 C -0.212 4.212 13 C -0.124 4.124 14 C -0.160 4.160 15 O -0.352 6.352 16 Si 0.619 3.381 17 N -0.130 5.130 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.114 4.114 21 H 0.093 0.907 22 C -0.212 4.212 23 C -0.143 4.143 24 C -0.170 4.170 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.241 0.759 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.229 0.771 35 H -0.179 1.179 36 H -0.181 1.181 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.513 -0.560 2.869 3.855 hybrid contribution 0.663 1.012 0.092 1.214 sum 3.176 0.452 2.961 4.366 Atomic orbital electron populations 1.23287 0.77258 1.03739 1.02058 1.86881 1.22423 1.31519 1.82502 1.24115 0.91865 0.82082 0.72262 1.90685 1.66728 1.36670 1.45546 1.20115 0.85275 0.88701 0.94702 1.46079 1.55193 1.04826 1.32094 1.20557 0.80841 0.83179 0.85961 1.90767 1.34885 1.83522 1.26425 1.20100 1.02165 0.88566 1.00207 1.19433 0.94653 0.94561 0.98859 1.20557 0.97314 0.96650 1.04974 1.20635 0.97575 1.00608 1.02372 1.20796 0.94721 0.91846 1.05015 1.24813 0.98463 0.96224 0.96461 1.86481 1.35708 1.73042 1.39982 0.94156 0.76048 0.79636 0.88277 1.41783 1.17532 1.17707 1.35976 1.21805 0.97082 0.94426 1.02115 1.21588 0.93776 1.02659 0.96971 1.21156 1.00341 0.95188 0.94675 0.90652 1.21976 1.01561 0.97811 0.99902 1.21474 0.94143 0.97233 1.01439 1.21998 0.96994 1.04904 0.93071 0.92133 0.88078 0.92281 0.75950 0.88371 0.86637 0.84688 0.84190 0.87375 0.77130 1.17934 1.18139 0.75204 0.90550 0.88454 0.90606 0.91654 0.92423 0.92522 0.92057 0.91754 0.91246 0.88840 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.56 101.05 1.07 1.13 16 2 O -0.32 -1.27 6.72 -47.37 -0.32 -1.59 16 3 C 0.46 1.66 6.71 36.00 0.24 1.90 16 4 O -0.51 -3.01 15.84 -18.75 -0.30 -3.31 16 5 C 0.20 0.05 0.63 -132.97 -0.08 -0.03 16 6 N -0.73 1.29 4.03 -48.68 -0.20 1.10 16 7 C 0.51 0.02 6.76 -10.99 -0.07 -0.05 16 8 O -0.48 -1.92 11.28 -18.95 -0.21 -2.14 16 9 C -0.07 0.16 6.24 -29.04 -0.18 -0.02 16 10 C 0.04 0.02 5.66 -81.79 -0.46 -0.44 16 11 C -0.17 -0.29 10.77 -39.78 -0.43 -0.71 16 12 C -0.19 -0.27 9.37 -39.78 -0.37 -0.64 16 13 C -0.01 -0.01 6.50 -81.79 -0.53 -0.54 16 14 C -0.05 -0.02 3.08 36.01 0.11 0.09 16 15 O -0.55 -0.14 12.88 -35.23 -0.45 -0.59 16 16 Si 0.72 -0.39 30.60 -169.99 -5.20 -5.59 16 17 N -0.54 -0.33 6.07 -5.44 -0.03 -0.36 16 18 C -0.12 0.13 4.04 -26.73 -0.11 0.03 16 19 C -0.11 0.33 5.28 -26.73 -0.14 0.19 16 20 C -0.10 0.20 3.19 -90.62 -0.29 -0.09 16 21 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 22 C -0.16 0.21 8.50 37.16 0.32 0.53 16 23 C -0.11 0.13 5.29 -26.73 -0.14 -0.01 16 24 C -0.13 -0.08 4.23 -26.73 -0.11 -0.20 16 25 H 0.06 0.14 8.13 -51.93 -0.42 -0.28 16 26 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 27 H 0.06 0.09 8.13 -51.93 -0.42 -0.33 16 28 H 0.40 -1.86 7.32 -40.82 -0.30 -2.16 16 29 H 0.10 -0.45 8.14 -51.93 -0.42 -0.87 16 30 H 0.12 -0.47 8.14 -51.93 -0.42 -0.90 16 31 H 0.14 0.10 8.06 -52.49 -0.42 -0.32 16 32 H 0.14 -0.04 6.24 -52.48 -0.33 -0.37 16 33 H 0.11 0.10 7.96 -51.93 -0.41 -0.31 16 34 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 35 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 36 H -0.26 -0.60 7.11 56.52 0.40 -0.20 16 37 H 0.41 -0.37 8.96 -40.82 -0.37 -0.74 16 38 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.10 0.01 6.16 -51.93 -0.32 -0.31 16 40 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 41 H 0.06 -0.28 6.86 -51.93 -0.36 -0.63 16 42 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 44 H 0.06 -0.03 4.81 -51.93 -0.25 -0.28 16 45 H 0.06 -0.10 7.60 -51.93 -0.39 -0.49 16 46 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 47 H 0.09 0.28 6.17 -51.93 -0.32 -0.04 16 48 H 0.08 0.09 6.43 -51.93 -0.33 -0.25 16 LS Contribution 373.26 15.07 5.62 5.62 Total: 0.00 -9.47 373.26 -9.54 -19.01 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: -7.25 Total: -13.27 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.19 Total: 1.12 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -0.23 Total: 0.73 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.28 Total: -7.63 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.20 Total: -5.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -9.47 -9.54 -19.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_14644196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.758 kcal (2) G-P(sol) polarization free energy of solvation -9.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds