Wall clock time and date at job start Sat Mar 6 2021 20:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00203 * 2 1 4 4 O 1.20823 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00012 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46931 * 34.99874 * 5 3 2 7 7 C 1.34774 * 120.00338 * 300.00107 * 6 5 3 8 8 O 1.21278 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.53546 * 109.82244 * 278.20680 * 9 7 6 11 11 C 1.53036 * 108.56364 * 179.51354 * 10 9 7 12 12 C 1.50206 * 110.31829 * 49.57130 * 11 10 9 13 13 C 1.50692 * 118.54884 * 159.97082 * 12 11 10 14 14 O 1.42907 * 109.47217 * 69.97936 * 13 12 11 15 15 Si 1.86296 * 109.47200 * 189.97739 * 13 12 11 16 16 C 1.31116 * 122.90526 * 339.94710 * 12 11 10 17 17 N 1.38926 * 121.85001 * 0.40560 * 16 12 11 18 18 C 1.53002 * 109.47389 * 275.00109 * 5 3 2 19 19 C 1.52993 * 109.47392 * 179.97438 * 18 5 3 20 20 C 1.52997 * 109.47024 * 60.00071 * 19 18 5 21 21 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47164 * 60.00057 * 20 19 18 23 23 C 1.52997 * 109.47232 * 299.99958 * 20 19 18 24 24 C 1.52997 * 109.47265 * 155.00035 * 5 3 2 25 25 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47067 * 299.99879 * 1 2 3 27 27 H 1.09000 * 109.46947 * 59.99814 * 1 2 3 28 28 H 0.97004 * 119.99198 * 120.00261 * 6 5 3 29 29 H 1.09000 * 109.81440 * 39.13846 * 9 7 6 30 30 H 1.08998 * 109.61582 * 299.23808 * 10 9 7 31 31 H 1.08997 * 109.61933 * 59.79097 * 10 9 7 32 32 H 1.09004 * 109.32712 * 289.31317 * 11 10 9 33 33 H 1.08994 * 109.32842 * 169.82765 * 11 10 9 34 34 H 1.08997 * 109.47298 * 309.97801 * 13 12 11 35 35 H 0.96696 * 113.99577 * 59.99844 * 14 13 12 36 36 H 1.48499 * 109.99964 * 58.68302 * 15 13 12 37 37 H 1.48507 * 110.00062 * 180.02562 * 15 13 12 38 38 H 1.07997 * 119.07926 * 180.38289 * 16 12 11 39 39 H 0.96999 * 120.56106 * 166.65555 * 17 16 12 40 40 H 1.09002 * 109.46838 * 300.00434 * 18 5 3 41 41 H 1.09004 * 109.47006 * 59.99931 * 18 5 3 42 42 H 1.09002 * 109.47722 * 300.00185 * 19 18 5 43 43 H 1.09000 * 109.47250 * 180.02562 * 19 18 5 44 44 H 1.09001 * 109.46998 * 299.99705 * 22 20 19 45 45 H 1.09000 * 109.47050 * 59.99996 * 22 20 19 46 46 H 1.09001 * 109.46801 * 180.02562 * 22 20 19 47 47 H 1.09004 * 109.47261 * 179.97438 * 23 20 19 48 48 H 1.09002 * 109.47153 * 299.99992 * 23 20 19 49 49 H 1.09002 * 109.47045 * 60.00159 * 24 5 3 50 50 H 1.09000 * 109.47140 * 300.00252 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1135 0.1702 -0.7912 7 6 3.8541 -1.1046 -0.4391 8 8 3.1681 -1.3374 0.5336 9 6 4.4174 -2.2407 -1.2533 10 6 3.5335 -2.4874 -2.4844 11 6 4.1372 -3.6362 -3.2953 12 6 4.4342 -4.8061 -2.4012 13 6 4.5932 -6.1680 -3.0262 14 8 5.8070 -6.2078 -3.7795 15 14 4.6505 -7.4626 -1.6878 16 6 4.5617 -4.6946 -1.1010 17 7 4.4211 -3.4740 -0.4526 18 6 4.0817 1.1761 1.4378 19 6 5.6096 1.2555 1.4383 20 6 6.0513 2.5873 0.8285 21 1 7.1398 2.6438 0.8284 22 6 5.4803 3.7412 1.6553 23 6 5.5360 2.6860 -0.6087 24 6 4.0075 2.6068 -0.6091 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 4.6625 0.3565 -1.5689 29 1 5.4331 -2.0015 -1.5682 30 1 2.5265 -2.7549 -2.1642 31 1 3.4986 -1.5861 -3.0963 32 1 5.0604 -3.2989 -3.7667 33 1 3.4317 -3.9424 -4.0676 34 1 3.7490 -6.3655 -3.6867 35 1 6.6014 -6.0403 -3.2543 36 1 3.4074 -7.4104 -0.8771 37 1 4.8078 -8.8104 -2.2912 38 1 4.7818 -5.5764 -0.5177 39 1 4.3266 -3.4359 0.5120 40 1 3.6745 1.9979 2.0269 41 1 3.7674 0.2271 1.8722 42 1 6.0164 0.4335 0.8493 43 1 5.9767 1.1848 2.4622 44 1 4.3918 3.6847 1.6549 45 1 5.8475 3.6710 2.6792 46 1 5.7946 4.6900 1.2205 47 1 5.8503 3.6351 -1.0431 48 1 5.9427 1.8640 -1.1978 49 1 3.6005 3.4286 -0.0200 50 1 3.6404 2.6771 -1.6330 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11976204_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:39 Heat of formation + Delta-G solvation = -128.154508 kcal Electronic energy + Delta-G solvation = -32432.999600 eV Core-core repulsion = 28234.072962 eV Total energy + Delta-G solvation = -4198.926639 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54584 -40.95389 -40.07689 -39.09006 -37.37098 -37.23846 -35.58782 -33.31945 -33.22891 -32.10384 -31.62756 -29.03342 -27.89346 -27.35850 -25.44722 -24.52227 -24.05792 -23.69478 -22.20616 -21.31900 -19.77245 -19.41165 -19.03944 -18.69071 -18.11688 -17.73247 -17.29473 -16.90508 -16.85736 -16.27120 -16.20040 -15.93161 -15.59828 -15.36843 -15.18616 -14.98447 -14.85646 -14.49967 -14.37144 -14.13990 -14.02985 -13.97439 -13.79259 -13.63619 -13.39744 -13.04588 -13.02838 -12.91288 -12.78434 -12.64985 -12.24842 -12.12100 -11.96793 -11.85815 -11.77568 -11.63540 -11.51469 -11.39106 -11.28418 -11.16887 -10.64662 -10.26052 -10.12686 -8.48483 -4.98470 1.09271 1.33879 1.42302 1.47396 1.69536 1.78812 1.81924 2.07534 2.57894 3.18550 3.45118 3.50063 3.58619 3.63989 3.75470 3.82328 3.85458 3.90327 3.95399 3.99913 4.11944 4.24358 4.24929 4.28316 4.32541 4.33860 4.36380 4.46522 4.57965 4.65208 4.65508 4.68448 4.70187 4.71715 4.76127 4.85710 4.94224 4.96243 4.98323 5.01174 5.13905 5.18399 5.20954 5.24378 5.26632 5.38616 5.48526 5.53236 6.16077 6.33445 6.75591 6.77722 6.81249 7.08012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.456 3.544 4 O -0.506 6.506 5 C 0.200 3.800 6 N -0.718 5.718 7 C 0.512 3.488 8 O -0.492 6.492 9 C 0.141 3.859 10 C -0.127 4.127 11 C -0.051 4.051 12 C -0.280 4.280 13 C -0.042 4.042 14 O -0.548 6.548 15 Si 0.665 3.335 16 C 0.146 3.854 17 N -0.730 5.730 18 C -0.132 4.132 19 C -0.106 4.106 20 C -0.095 4.095 21 H 0.076 0.924 22 C -0.155 4.155 23 C -0.113 4.113 24 C -0.117 4.117 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.407 0.593 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.375 0.625 36 H -0.260 1.260 37 H -0.258 1.258 38 H 0.133 0.867 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 1.709 0.320 5.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.297 3.703 4 O -0.394 6.394 5 C 0.112 3.888 6 N -0.375 5.375 7 C 0.297 3.703 8 O -0.365 6.365 9 C 0.031 3.969 10 C -0.165 4.165 11 C -0.088 4.088 12 C -0.290 4.290 13 C -0.154 4.154 14 O -0.353 6.353 15 Si 0.568 3.432 16 C 0.025 3.975 17 N -0.364 5.364 18 C -0.170 4.170 19 C -0.144 4.144 20 C -0.114 4.114 21 H 0.095 0.905 22 C -0.213 4.213 23 C -0.151 4.151 24 C -0.155 4.155 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.243 0.757 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.221 0.779 36 H -0.185 1.185 37 H -0.184 1.184 38 H 0.150 0.850 39 H 0.246 0.754 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.448 1.059 0.820 3.699 hybrid contribution -0.554 0.484 -0.442 0.858 sum 2.894 1.543 0.378 3.301 Atomic orbital electron populations 1.23289 0.77180 1.03689 1.02198 1.86855 1.22492 1.31669 1.82610 1.24097 0.91840 0.82071 0.72337 1.90692 1.66676 1.36616 1.45370 1.20173 0.85227 0.88601 0.94809 1.46007 1.54754 1.04699 1.32006 1.20557 0.80591 0.83565 0.85591 1.90738 1.35343 1.83623 1.26748 1.20942 0.99934 0.84365 0.91637 1.21862 0.99609 0.99860 0.95198 1.19928 1.00592 0.91819 0.96479 1.20949 1.16756 0.97391 0.93897 1.24713 0.89187 0.99314 1.02226 1.86480 1.15427 1.94409 1.38945 0.95383 0.88043 0.78697 0.81067 1.20292 0.96439 0.87875 0.92858 1.44260 1.81243 1.01977 1.08870 1.22011 0.97150 1.04978 0.92829 1.21485 0.93975 0.97302 1.01600 1.21159 1.00433 0.95184 0.94599 0.90550 1.21980 1.01513 0.97828 0.99938 1.21607 0.93647 1.02740 0.97062 1.21827 0.97204 0.94295 1.02146 0.88193 0.91983 0.92225 0.75707 0.89223 0.90534 0.90492 0.91257 0.91069 0.87903 0.77863 1.18505 1.18362 0.85031 0.75412 0.90067 0.88790 0.91617 0.91077 0.92106 0.92470 0.92425 0.90536 0.91615 0.88337 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 101.05 1.07 1.11 16 2 O -0.32 -1.04 6.73 -47.35 -0.32 -1.36 16 3 C 0.46 1.34 6.71 36.01 0.24 1.59 16 4 O -0.51 -2.69 15.84 -18.75 -0.30 -2.98 16 5 C 0.20 -0.08 0.63 -132.97 -0.08 -0.17 16 6 N -0.72 1.61 4.03 -48.68 -0.20 1.41 16 7 C 0.51 -0.30 6.02 -10.99 -0.07 -0.36 16 8 O -0.49 -1.25 11.35 -18.95 -0.22 -1.46 16 9 C 0.14 -0.26 3.36 -68.51 -0.23 -0.49 16 10 C -0.13 0.17 5.47 -26.43 -0.14 0.02 16 11 C -0.05 0.04 5.85 -28.10 -0.16 -0.13 16 12 C -0.28 0.12 5.37 -101.34 -0.54 -0.42 16 13 C -0.04 0.00 2.81 36.00 0.10 0.10 16 14 O -0.55 -0.30 12.88 -35.23 -0.45 -0.75 16 15 Si 0.67 -0.39 29.72 -169.99 -5.05 -5.44 16 16 C 0.15 -0.17 9.61 -16.08 -0.15 -0.32 16 17 N -0.73 0.80 5.46 -55.34 -0.30 0.50 16 18 C -0.13 0.04 4.23 -26.73 -0.11 -0.07 16 19 C -0.11 0.22 5.29 -26.74 -0.14 0.08 16 20 C -0.10 0.26 3.19 -90.62 -0.29 -0.03 16 21 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 22 C -0.16 0.30 8.50 37.16 0.32 0.62 16 23 C -0.11 0.38 5.28 -26.71 -0.14 0.24 16 24 C -0.12 0.20 4.04 -26.71 -0.11 0.09 16 25 H 0.10 -0.01 8.14 -51.93 -0.42 -0.44 16 26 H 0.06 0.10 8.13 -51.93 -0.42 -0.32 16 27 H 0.06 0.07 8.13 -51.93 -0.42 -0.35 16 28 H 0.41 -1.92 7.32 -40.82 -0.30 -2.22 16 29 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.10 0.11 7.96 -51.93 -0.41 -0.30 16 35 H 0.37 -1.28 8.70 45.56 0.40 -0.88 16 36 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 37 H -0.26 -0.79 7.11 56.52 0.40 -0.39 16 38 H 0.13 -0.38 4.49 -52.49 -0.24 -0.61 16 39 H 0.41 -0.41 8.12 -40.82 -0.33 -0.74 16 40 H 0.08 0.01 6.43 -51.93 -0.33 -0.32 16 41 H 0.09 0.15 6.17 -51.93 -0.32 -0.17 16 42 H 0.07 -0.15 7.60 -51.93 -0.39 -0.54 16 43 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 44 H 0.06 -0.07 4.81 -51.93 -0.25 -0.32 16 45 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 47 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 48 H 0.07 -0.30 6.86 -51.93 -0.36 -0.66 16 49 H 0.10 -0.05 6.16 -51.93 -0.32 -0.37 16 50 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 LS Contribution 375.74 15.07 5.66 5.66 Total: 0.00 -7.94 375.74 -9.60 -17.54 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: -7.97 Total: -14.95 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.46 Total: 1.84 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -0.50 Total: 1.91 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -1.28 Total: -6.56 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.05 Total: -5.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -7.94 -9.60 -17.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.615 kcal (2) G-P(sol) polarization free energy of solvation -7.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds