Wall clock time and date at job start Sat Mar 6 2021 20:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00203 * 2 1 4 4 O 1.20823 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00012 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46931 * 34.99874 * 5 3 2 7 7 C 1.34774 * 120.00338 * 300.00107 * 6 5 3 8 8 O 1.21278 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.53546 * 109.82244 * 278.20680 * 9 7 6 11 11 C 1.53036 * 108.56364 * 179.51354 * 10 9 7 12 12 C 1.50206 * 110.31829 * 49.57130 * 11 10 9 13 13 C 1.50692 * 118.54884 * 159.97082 * 12 11 10 14 14 O 1.42907 * 109.47217 * 69.97936 * 13 12 11 15 15 Si 1.86296 * 109.47200 * 189.97739 * 13 12 11 16 16 C 1.31116 * 122.90526 * 339.94710 * 12 11 10 17 17 N 1.38926 * 121.85001 * 0.40560 * 16 12 11 18 18 C 1.53002 * 109.47389 * 275.00109 * 5 3 2 19 19 C 1.52993 * 109.47392 * 179.97438 * 18 5 3 20 20 C 1.52997 * 109.47024 * 60.00071 * 19 18 5 21 21 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47164 * 60.00057 * 20 19 18 23 23 C 1.52997 * 109.47232 * 299.99958 * 20 19 18 24 24 C 1.52997 * 109.47265 * 155.00035 * 5 3 2 25 25 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47067 * 299.99879 * 1 2 3 27 27 H 1.09000 * 109.46947 * 59.99814 * 1 2 3 28 28 H 0.97004 * 119.99198 * 120.00261 * 6 5 3 29 29 H 1.09000 * 109.81440 * 39.13846 * 9 7 6 30 30 H 1.08998 * 109.61582 * 299.23808 * 10 9 7 31 31 H 1.08997 * 109.61933 * 59.79097 * 10 9 7 32 32 H 1.09004 * 109.32712 * 289.31317 * 11 10 9 33 33 H 1.08994 * 109.32842 * 169.82765 * 11 10 9 34 34 H 1.08997 * 109.47298 * 309.97801 * 13 12 11 35 35 H 0.96696 * 113.99577 * 59.99844 * 14 13 12 36 36 H 1.48499 * 109.99964 * 58.68302 * 15 13 12 37 37 H 1.48507 * 110.00062 * 180.02562 * 15 13 12 38 38 H 1.07997 * 119.07926 * 180.38289 * 16 12 11 39 39 H 0.96999 * 120.56106 * 166.65555 * 17 16 12 40 40 H 1.09002 * 109.46838 * 300.00434 * 18 5 3 41 41 H 1.09004 * 109.47006 * 59.99931 * 18 5 3 42 42 H 1.09002 * 109.47722 * 300.00185 * 19 18 5 43 43 H 1.09000 * 109.47250 * 180.02562 * 19 18 5 44 44 H 1.09001 * 109.46998 * 299.99705 * 22 20 19 45 45 H 1.09000 * 109.47050 * 59.99996 * 22 20 19 46 46 H 1.09001 * 109.46801 * 180.02562 * 22 20 19 47 47 H 1.09004 * 109.47261 * 179.97438 * 23 20 19 48 48 H 1.09002 * 109.47153 * 299.99992 * 23 20 19 49 49 H 1.09002 * 109.47045 * 60.00159 * 24 5 3 50 50 H 1.09000 * 109.47140 * 300.00252 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1135 0.1702 -0.7912 7 6 3.8541 -1.1046 -0.4391 8 8 3.1681 -1.3374 0.5336 9 6 4.4174 -2.2407 -1.2533 10 6 3.5335 -2.4874 -2.4844 11 6 4.1372 -3.6362 -3.2953 12 6 4.4342 -4.8061 -2.4012 13 6 4.5932 -6.1680 -3.0262 14 8 5.8070 -6.2078 -3.7795 15 14 4.6505 -7.4626 -1.6878 16 6 4.5617 -4.6946 -1.1010 17 7 4.4211 -3.4740 -0.4526 18 6 4.0817 1.1761 1.4378 19 6 5.6096 1.2555 1.4383 20 6 6.0513 2.5873 0.8285 21 1 7.1398 2.6438 0.8284 22 6 5.4803 3.7412 1.6553 23 6 5.5360 2.6860 -0.6087 24 6 4.0075 2.6068 -0.6091 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 4.6625 0.3565 -1.5689 29 1 5.4331 -2.0015 -1.5682 30 1 2.5265 -2.7549 -2.1642 31 1 3.4986 -1.5861 -3.0963 32 1 5.0604 -3.2989 -3.7667 33 1 3.4317 -3.9424 -4.0676 34 1 3.7490 -6.3655 -3.6867 35 1 6.6014 -6.0403 -3.2543 36 1 3.4074 -7.4104 -0.8771 37 1 4.8078 -8.8104 -2.2912 38 1 4.7818 -5.5764 -0.5177 39 1 4.3266 -3.4359 0.5120 40 1 3.6745 1.9979 2.0269 41 1 3.7674 0.2271 1.8722 42 1 6.0164 0.4335 0.8493 43 1 5.9767 1.1848 2.4622 44 1 4.3918 3.6847 1.6549 45 1 5.8475 3.6710 2.6792 46 1 5.7946 4.6900 1.2205 47 1 5.8503 3.6351 -1.0431 48 1 5.9427 1.8640 -1.1978 49 1 3.6005 3.4286 -0.0200 50 1 3.6404 2.6771 -1.6330 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:38 Heat of formation + Delta-G solvation = -126.546072 kcal Electronic energy + Delta-G solvation = -32432.929853 eV Core-core repulsion = 28234.072962 eV Total energy + Delta-G solvation = -4198.856892 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.58160 -41.00477 -40.06439 -39.04815 -37.55991 -37.25808 -35.53195 -33.24616 -33.15313 -31.97158 -31.55762 -29.10620 -27.83194 -27.29224 -25.37787 -24.52634 -23.93959 -23.63457 -22.17797 -21.33764 -19.69421 -19.33548 -18.94637 -18.76687 -18.14636 -17.81019 -17.44833 -16.87839 -16.79346 -16.20945 -16.17198 -15.85664 -15.45154 -15.36463 -15.14069 -14.99245 -14.83708 -14.55512 -14.30824 -14.10025 -14.03513 -13.95565 -13.76255 -13.60486 -13.31511 -13.11959 -12.98048 -12.86780 -12.70216 -12.59198 -12.22714 -12.09118 -11.89658 -11.87019 -11.85562 -11.81282 -11.36955 -11.22972 -11.20243 -11.11566 -10.62756 -10.24205 -10.11777 -8.39516 -4.99071 0.91353 1.40442 1.42396 1.49705 1.65660 1.73937 1.86238 2.02896 2.69015 3.24910 3.51907 3.59959 3.63413 3.73623 3.87471 3.93316 4.00402 4.02576 4.07704 4.09986 4.13779 4.17880 4.26935 4.36602 4.41964 4.47702 4.50110 4.55448 4.58922 4.66816 4.67788 4.79897 4.81156 4.86329 4.88186 5.03600 5.04486 5.08268 5.12098 5.19744 5.27037 5.28392 5.29295 5.34212 5.37052 5.41115 5.55628 5.61920 6.28466 6.47524 6.57237 6.88920 6.99006 7.17811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.330 6.330 3 C 0.449 3.551 4 O -0.537 6.537 5 C 0.206 3.794 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.525 6.525 9 C 0.145 3.855 10 C -0.122 4.122 11 C -0.050 4.050 12 C -0.292 4.292 13 C -0.045 4.045 14 O -0.564 6.564 15 Si 0.757 3.243 16 C 0.149 3.851 17 N -0.733 5.733 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.092 4.092 21 H 0.087 0.913 22 C -0.157 4.157 23 C -0.108 4.108 24 C -0.113 4.113 25 H 0.115 0.885 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.422 0.578 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.392 0.608 36 H -0.296 1.296 37 H -0.309 1.309 38 H 0.147 0.853 39 H 0.409 0.591 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 2.122 -0.295 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.245 6.245 3 C 0.292 3.708 4 O -0.426 6.426 5 C 0.117 3.883 6 N -0.361 5.361 7 C 0.299 3.701 8 O -0.400 6.400 9 C 0.036 3.964 10 C -0.161 4.161 11 C -0.087 4.087 12 C -0.302 4.302 13 C -0.156 4.156 14 O -0.372 6.372 15 Si 0.665 3.335 16 C 0.028 3.972 17 N -0.366 5.366 18 C -0.165 4.165 19 C -0.137 4.137 20 C -0.111 4.111 21 H 0.106 0.894 22 C -0.214 4.214 23 C -0.145 4.145 24 C -0.151 4.151 25 H 0.133 0.867 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.261 0.739 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.242 0.758 36 H -0.224 1.224 37 H -0.238 1.238 38 H 0.164 0.836 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.420 1.504 0.186 5.628 hybrid contribution -1.237 0.322 -0.234 1.299 sum 4.184 1.827 -0.049 4.565 Atomic orbital electron populations 1.23408 0.76713 1.04667 1.02029 1.86871 1.23208 1.31983 1.82406 1.24871 0.93206 0.81502 0.71242 1.90667 1.67648 1.37432 1.46872 1.20152 0.83092 0.89819 0.95223 1.45859 1.54327 1.03798 1.32138 1.20809 0.79968 0.84134 0.85153 1.90736 1.36818 1.84108 1.28297 1.21035 1.00989 0.83541 0.90849 1.21811 0.98311 1.00372 0.95570 1.19917 1.00680 0.91900 0.96250 1.20929 1.17869 0.97197 0.94245 1.24735 0.88871 1.00060 1.01973 1.86437 1.16264 1.94495 1.39976 0.94417 0.85431 0.75050 0.78568 1.20453 0.95596 0.88352 0.92768 1.44356 1.80951 1.02259 1.08996 1.21935 0.98567 1.03407 0.92601 1.21454 0.92277 0.98119 1.01867 1.21158 1.00971 0.94153 0.94795 0.89422 1.21986 1.00806 0.98512 1.00088 1.21621 0.91954 1.04086 0.96862 1.21819 0.98614 0.92813 1.01882 0.86676 0.92520 0.92042 0.73873 0.86514 0.92910 0.88816 0.90390 0.92214 0.89409 0.75833 1.22351 1.23799 0.83611 0.75446 0.91139 0.90768 0.90693 0.91247 0.93279 0.92785 0.92123 0.89709 0.89540 0.89851 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.33 -2.54 6.73 -43.60 -0.29 -2.83 16 3 C 0.45 3.18 6.71 71.24 0.48 3.65 16 4 O -0.54 -6.60 15.84 21.97 0.35 -6.25 16 5 C 0.21 -0.14 0.63 2.86 0.00 -0.14 16 6 N -0.70 3.86 4.03 -426.33 -1.72 2.14 16 7 C 0.51 -0.89 6.02 87.66 0.53 -0.36 16 8 O -0.52 -2.92 11.35 20.41 0.23 -2.68 16 9 C 0.14 -0.72 3.36 44.33 0.15 -0.57 16 10 C -0.12 0.41 5.47 30.79 0.17 0.58 16 11 C -0.05 0.10 5.85 29.71 0.17 0.27 16 12 C -0.29 0.39 5.37 -16.76 -0.09 0.30 16 13 C -0.04 -0.01 2.81 71.23 0.20 0.19 16 14 O -0.56 -0.31 12.88 -148.98 -1.92 -2.23 16 15 Si 0.76 -0.64 29.72 68.60 2.04 1.39 16 16 C 0.15 -0.46 9.61 83.41 0.80 0.34 16 17 N -0.73 2.20 5.46 -328.99 -1.80 0.40 16 18 C -0.13 0.00 4.23 30.59 0.13 0.13 16 19 C -0.10 0.48 5.29 30.59 0.16 0.64 16 20 C -0.09 0.61 3.19 -10.79 -0.03 0.58 16 21 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 22 C -0.16 0.61 8.50 71.98 0.61 1.22 16 23 C -0.11 0.92 5.28 30.61 0.16 1.09 16 24 C -0.11 0.42 4.04 30.61 0.12 0.55 16 25 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 27 H 0.06 0.22 8.13 -2.39 -0.02 0.20 16 28 H 0.42 -4.94 7.32 -92.71 -0.68 -5.62 16 29 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 30 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.09 0.27 7.96 -2.39 -0.02 0.25 16 35 H 0.39 -3.16 8.70 -74.06 -0.64 -3.80 16 36 H -0.30 -1.48 7.11 99.48 0.71 -0.78 16 37 H -0.31 -2.36 7.11 99.48 0.71 -1.65 16 38 H 0.15 -0.98 4.49 -2.91 -0.01 -0.99 16 39 H 0.41 -0.99 8.12 -92.71 -0.75 -1.74 16 40 H 0.07 0.14 6.43 -2.39 -0.02 0.12 16 41 H 0.07 0.33 6.17 -2.38 -0.01 0.32 16 42 H 0.07 -0.47 7.60 -2.39 -0.02 -0.49 16 43 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.05 -0.06 4.81 -2.39 -0.01 -0.08 16 45 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.08 -0.79 8.14 -2.38 -0.02 -0.81 16 48 H 0.09 -1.07 6.86 -2.39 -0.02 -1.09 16 49 H 0.08 -0.02 6.16 -2.39 -0.01 -0.03 16 50 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -20.71 375.74 0.60 -20.12 By element: Atomic # 1 Polarization: -18.76 SS G_CDS: -1.06 Total: -19.82 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.76 Total: 9.77 kcal Atomic # 7 Polarization: 6.05 SS G_CDS: -3.52 Total: 2.54 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.63 Total: -14.00 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: 2.04 Total: 1.39 kcal Total: -20.71 0.60 -20.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.430 kcal (2) G-P(sol) polarization free energy of solvation -20.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds