Wall clock time and date at job start Sat Mar 6 2021 20:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00234 * 2 1 4 4 O 1.20834 * 119.99996 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00197 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46930 * 324.99958 * 5 3 2 7 7 C 1.34782 * 119.99958 * 60.00240 * 6 5 3 8 8 O 1.21286 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00090 * 179.97438 * 7 6 5 10 10 O 1.42902 * 109.47301 * 180.02562 * 9 7 6 11 11 C 1.35903 * 117.00224 * 180.02562 * 10 9 7 12 12 C 1.38703 * 120.05406 * 179.72763 * 11 10 9 13 13 C 1.50701 * 120.03206 * 0.24353 * 12 11 10 14 14 O 1.42903 * 109.47376 * 285.00928 * 13 12 11 15 15 Si 1.86293 * 109.47333 * 165.00411 * 13 12 11 16 16 C 1.38168 * 119.94277 * 180.25131 * 12 11 10 17 17 C 1.38241 * 120.05773 * 0.02562 * 16 12 11 18 18 C 1.38287 * 120.10676 * 359.97438 * 17 16 12 19 19 C 1.38116 * 120.06102 * 359.97438 * 18 17 16 20 20 C 1.53003 * 109.47005 * 205.00230 * 5 3 2 21 21 C 1.52998 * 109.46823 * 179.97438 * 20 5 3 22 22 C 1.52999 * 109.47177 * 60.00232 * 21 20 5 23 23 H 1.08998 * 109.47203 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47094 * 59.99807 * 22 21 20 25 25 C 1.52995 * 109.47157 * 299.99819 * 22 21 20 26 26 C 1.52998 * 109.47258 * 59.99839 * 25 22 21 27 27 H 1.09004 * 109.47101 * 299.99291 * 1 2 3 28 28 H 1.08996 * 109.47386 * 59.99092 * 1 2 3 29 29 H 1.08994 * 109.47277 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00646 * 239.99368 * 6 5 3 31 31 H 1.09004 * 109.47483 * 60.00099 * 9 7 6 32 32 H 1.08998 * 109.47353 * 300.00052 * 9 7 6 33 33 H 1.09007 * 109.46545 * 45.00480 * 13 12 11 34 34 H 0.96703 * 113.99880 * 299.99356 * 14 13 12 35 35 H 1.48504 * 110.00243 * 180.02562 * 15 13 12 36 36 H 1.48502 * 110.00316 * 301.32114 * 15 13 12 37 37 H 1.08004 * 119.96799 * 180.02562 * 16 12 11 38 38 H 1.07999 * 119.94448 * 180.02562 * 17 16 12 39 39 H 1.08002 * 119.96764 * 179.97438 * 18 17 16 40 40 H 1.08000 * 120.03192 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47289 * 299.99863 * 20 5 3 42 42 H 1.09004 * 109.46946 * 60.00421 * 20 5 3 43 43 H 1.09004 * 109.47029 * 180.02562 * 21 20 5 44 44 H 1.09005 * 109.47466 * 299.99716 * 21 20 5 45 45 H 1.08999 * 109.47371 * 59.99995 * 24 22 21 46 46 H 1.08998 * 109.46863 * 180.02562 * 24 22 21 47 47 H 1.08998 * 109.47166 * 300.00109 * 24 22 21 48 48 H 1.08998 * 109.47306 * 180.02562 * 25 22 21 49 49 H 1.08999 * 109.47081 * 300.00013 * 25 22 21 50 50 H 1.08999 * 109.47137 * 180.02562 * 26 25 22 51 51 H 1.08999 * 109.46933 * 60.00083 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1135 0.1703 0.7912 7 6 3.8541 -1.1045 0.4390 8 8 3.1673 -1.3373 -0.5332 9 6 4.4173 -2.2407 1.2531 10 8 4.0058 -3.4849 0.6833 11 6 4.4310 -4.6176 1.3022 12 6 4.0642 -5.8598 0.8060 13 6 3.1979 -5.9551 -0.4236 14 8 1.8505 -5.6217 -0.0840 15 14 3.2581 -7.6927 -1.0926 16 6 4.4935 -7.0099 1.4400 17 6 5.2875 -6.9234 2.5683 18 6 5.6546 -5.6860 3.0649 19 6 5.2289 -4.5334 2.4342 20 6 4.0075 2.6069 0.6092 21 6 5.5354 2.6867 0.6092 22 6 6.0512 2.5879 -0.8278 23 1 7.1397 2.6452 -0.8279 24 6 5.4802 3.7415 -1.6550 25 6 5.6101 1.2559 -1.4376 26 6 4.0822 1.1761 -1.4376 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.6625 0.3564 1.5689 31 1 4.0506 -2.1707 2.2772 32 1 5.5058 -2.1836 1.2523 33 1 3.5641 -5.2613 -1.1805 34 1 1.4593 -6.1992 0.5859 35 1 2.4083 -7.7996 -2.3058 36 1 4.6586 -8.0628 -1.4199 37 1 4.2084 -7.9774 1.0537 38 1 5.6224 -7.8235 3.0622 39 1 6.2746 -5.6210 3.9468 40 1 5.5162 -3.5673 2.8222 41 1 3.6004 3.4287 0.0201 42 1 3.6404 2.6770 1.6332 43 1 5.8497 3.6355 1.0440 44 1 5.9422 1.8649 1.1986 45 1 5.7945 4.6905 -1.2206 46 1 5.8474 3.6708 -2.6789 47 1 4.3917 3.6846 -1.6550 48 1 5.9779 1.1853 -2.4612 49 1 6.0168 0.4341 -0.8483 50 1 3.7679 0.2269 -1.8716 51 1 3.6754 1.9978 -2.0269 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_2989392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:51:49 Heat of formation + Delta-G solvation = -148.948390 kcal Electronic energy + Delta-G solvation = -35202.750953 eV Core-core repulsion = 30648.751681 eV Total energy + Delta-G solvation = -4553.999272 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.59800 -41.44120 -40.58493 -39.54879 -38.38106 -37.56187 -37.44183 -35.55766 -32.79736 -32.35188 -32.01336 -31.05598 -29.23425 -28.91457 -27.74055 -26.64529 -24.60373 -23.99464 -23.61603 -22.59239 -22.07396 -21.35248 -19.73762 -19.37479 -18.88109 -18.44041 -18.09854 -17.83934 -17.51075 -17.32103 -16.84233 -16.74506 -16.53336 -16.18070 -15.73751 -15.53435 -15.36906 -15.13791 -14.97346 -14.93779 -14.81227 -14.56039 -14.19442 -14.07144 -13.82642 -13.76817 -13.68438 -13.41911 -13.32931 -13.11318 -12.97578 -12.74233 -12.65711 -12.33301 -12.19041 -12.13319 -12.03294 -11.89009 -11.87101 -11.72971 -11.41738 -11.27808 -11.17665 -10.74126 -10.35472 -10.31161 -9.92542 -9.17452 -5.04399 0.27886 0.45813 0.84772 1.30448 1.43395 1.48872 1.62824 1.71705 1.96443 2.55505 2.75066 3.21374 3.46728 3.55324 3.58083 3.59709 3.78565 3.92137 3.95119 3.97173 4.01849 4.03041 4.09310 4.11815 4.16261 4.16827 4.22144 4.35297 4.36129 4.39981 4.43200 4.53500 4.55592 4.56058 4.68745 4.76263 4.81018 4.84576 4.99135 5.01225 5.03300 5.06532 5.14376 5.23347 5.26226 5.31496 5.32557 5.36587 5.41798 5.51583 5.56987 5.80160 6.28359 6.44869 6.53889 6.83434 7.14962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.334 6.334 3 C 0.448 3.552 4 O -0.534 6.534 5 C 0.207 3.793 6 N -0.703 5.703 7 C 0.511 3.489 8 O -0.519 6.519 9 C 0.040 3.960 10 O -0.310 6.310 11 C 0.128 3.872 12 C -0.171 4.171 13 C -0.069 4.069 14 O -0.555 6.555 15 Si 0.790 3.210 16 C -0.079 4.079 17 C -0.155 4.155 18 C -0.077 4.077 19 C -0.214 4.214 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.092 4.092 23 H 0.089 0.911 24 C -0.157 4.157 25 C -0.101 4.101 26 C -0.129 4.129 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.424 0.576 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.390 0.610 35 H -0.305 1.305 36 H -0.282 1.282 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -2.094 8.437 10.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.248 6.248 3 C 0.291 3.709 4 O -0.424 6.424 5 C 0.119 3.881 6 N -0.362 5.362 7 C 0.297 3.703 8 O -0.393 6.393 9 C -0.038 4.038 10 O -0.223 6.223 11 C 0.083 3.917 12 C -0.172 4.172 13 C -0.178 4.178 14 O -0.363 6.363 15 Si 0.695 3.305 16 C -0.097 4.097 17 C -0.173 4.173 18 C -0.094 4.094 19 C -0.232 4.232 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.107 0.893 24 C -0.214 4.214 25 C -0.138 4.138 26 C -0.167 4.167 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.264 0.736 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.239 0.761 35 H -0.233 1.233 36 H -0.209 1.209 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.073 -2.010 6.453 9.086 hybrid contribution -0.277 1.108 -0.118 1.148 sum 5.796 -0.902 6.335 8.634 Atomic orbital electron populations 1.23417 0.76509 1.04657 1.02163 1.86898 1.23485 1.32108 1.82340 1.24857 0.93225 0.81499 0.71336 1.90660 1.67595 1.37256 1.46841 1.20167 0.83168 0.89813 0.94991 1.45680 1.54812 1.03260 1.32454 1.20451 0.80390 0.84073 0.85423 1.90790 1.36388 1.84079 1.28042 1.22627 1.02110 0.81145 0.97908 1.86188 1.70929 1.12393 1.52779 1.19079 0.94357 0.85767 0.92532 1.19832 1.04896 0.91688 1.00818 1.25123 0.83136 1.12376 0.97173 1.86545 1.25222 1.60832 1.63682 0.94085 0.78365 0.76369 0.81661 1.21102 0.96596 0.96594 0.95382 1.21436 0.99700 0.99176 0.96986 1.21400 0.97235 0.91561 0.99248 1.21579 1.02936 1.01652 0.97051 1.21820 0.98666 0.92408 1.02051 1.21619 0.91896 1.04291 0.96669 1.21156 1.01030 0.93830 0.94974 0.89293 1.21985 1.00824 0.98555 1.00036 1.21461 0.92209 0.98374 1.01791 1.21941 0.98694 1.03140 0.92962 0.91586 0.92497 0.86910 0.73591 0.86563 0.86000 0.90192 0.76107 1.23320 1.20894 0.82734 0.82938 0.82991 0.82954 0.89642 0.89681 0.89294 0.89493 0.91783 0.92917 0.93276 0.91494 0.90977 0.91554 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.40 16 2 O -0.33 -3.99 6.72 -43.63 -0.29 -4.28 16 3 C 0.45 4.49 6.71 71.24 0.48 4.97 16 4 O -0.53 -7.65 15.84 21.94 0.35 -7.31 16 5 C 0.21 0.43 0.63 2.86 0.00 0.43 16 6 N -0.70 1.91 4.03 -426.33 -1.72 0.19 16 7 C 0.51 1.71 6.84 87.65 0.60 2.31 16 8 O -0.52 -7.13 11.75 26.91 0.32 -6.81 16 9 C 0.04 -0.08 5.22 71.23 0.37 0.30 16 10 O -0.31 -2.26 9.00 -73.42 -0.66 -2.92 16 11 C 0.13 0.51 6.66 22.50 0.15 0.66 16 12 C -0.17 -0.62 5.27 -19.77 -0.10 -0.72 16 13 C -0.07 -0.42 2.38 71.24 0.17 -0.25 16 14 O -0.56 -4.22 12.88 -148.98 -1.92 -6.14 16 15 Si 0.79 0.99 29.92 68.60 2.05 3.05 16 16 C -0.08 0.14 8.66 22.25 0.19 0.34 16 17 C -0.16 0.62 10.04 22.28 0.22 0.85 16 18 C -0.08 0.33 10.04 22.25 0.22 0.55 16 19 C -0.21 0.47 9.04 22.36 0.20 0.67 16 20 C -0.11 0.28 4.04 30.59 0.12 0.40 16 21 C -0.11 0.82 5.28 30.59 0.16 0.98 16 22 C -0.09 0.45 3.19 -10.80 -0.03 0.42 16 23 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 24 C -0.16 0.39 8.50 71.98 0.61 1.00 16 25 C -0.10 0.17 5.29 30.59 0.16 0.33 16 26 C -0.13 -0.48 4.23 30.59 0.13 -0.35 16 27 H 0.07 0.39 8.13 -2.39 -0.02 0.37 16 28 H 0.06 0.47 8.13 -2.39 -0.02 0.45 16 29 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.42 -4.56 7.32 -92.71 -0.68 -5.23 16 31 H 0.12 -0.84 7.67 -2.39 -0.02 -0.86 16 32 H 0.12 -1.05 7.66 -2.39 -0.02 -1.07 16 33 H 0.08 0.95 7.83 -2.38 -0.02 0.93 16 34 H 0.39 -0.82 8.70 -74.05 -0.64 -1.46 16 35 H -0.30 -2.86 7.11 99.48 0.71 -2.15 16 36 H -0.28 -1.46 7.11 99.48 0.71 -0.76 16 37 H 0.16 -1.10 5.13 -2.91 -0.01 -1.11 16 38 H 0.15 -1.37 8.06 -2.91 -0.02 -1.39 16 39 H 0.15 -1.43 8.06 -2.91 -0.02 -1.45 16 40 H 0.15 -1.24 6.30 -2.91 -0.02 -1.26 16 41 H 0.09 0.07 6.16 -2.39 -0.01 0.06 16 42 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.09 -0.80 8.14 -2.38 -0.02 -0.82 16 44 H 0.09 -1.01 6.86 -2.38 -0.02 -1.03 16 45 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 47 H 0.05 0.01 4.81 -2.39 -0.01 0.00 16 48 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.07 -0.21 7.60 -2.39 -0.02 -0.23 16 50 H 0.07 0.66 6.17 -2.39 -0.01 0.65 16 51 H 0.07 0.36 6.43 -2.39 -0.02 0.35 16 Total: 0.00 -29.51 394.94 2.67 -26.84 By element: Atomic # 1 Polarization: -16.58 SS G_CDS: -0.31 Total: -16.89 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.86 Total: 14.27 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -1.72 Total: 0.19 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -2.21 Total: -27.46 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: 2.05 Total: 3.05 kcal Total: -29.51 2.67 -26.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_2989392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.113 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds