Wall clock time and date at job start Sat Mar 6 2021 20:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46264 * 35.00256 * 5 3 2 7 7 C 1.34774 * 120.00500 * 299.99315 * 6 5 3 8 8 O 1.21280 * 119.99366 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00116 * 180.02562 * 7 6 5 10 10 O 1.42905 * 109.47170 * 180.02562 * 9 7 6 11 11 C 1.35898 * 117.00303 * 179.97438 * 10 9 7 12 12 C 1.38704 * 120.05605 * 179.97438 * 11 10 9 13 13 N 1.48006 * 120.02916 * 359.95822 * 12 11 10 14 14 O 1.21804 * 119.99969 * 179.97438 * 13 12 11 15 15 O 1.21798 * 119.99768 * 0.02562 * 13 12 11 16 16 C 1.38166 * 119.94400 * 179.97438 * 12 11 10 17 17 C 1.38242 * 120.05644 * 0.02834 * 16 12 11 18 18 C 1.50701 * 119.94623 * 180.02562 * 17 16 12 19 19 O 1.42902 * 109.47049 * 299.99656 * 18 17 16 20 20 Si 1.86295 * 109.47151 * 179.97438 * 18 17 16 21 21 C 1.38288 * 120.10886 * 359.97222 * 17 16 12 22 22 C 1.38115 * 120.05678 * 359.75095 * 21 17 16 23 23 C 1.52994 * 109.47455 * 275.00478 * 5 3 2 24 24 C 1.53001 * 109.47204 * 179.97438 * 23 5 3 25 25 C 1.53002 * 109.46989 * 59.99833 * 24 23 5 26 26 H 1.08999 * 109.46884 * 180.02562 * 25 24 23 27 27 C 1.52994 * 109.47238 * 60.00111 * 25 24 23 28 28 C 1.53000 * 109.47201 * 299.99821 * 25 24 23 29 29 C 1.53001 * 109.47003 * 60.00188 * 28 25 24 30 30 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 31 31 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 33 33 H 0.97002 * 119.99703 * 120.00153 * 6 5 3 34 34 H 1.09000 * 109.47302 * 300.00335 * 9 7 6 35 35 H 1.08999 * 109.47100 * 60.00599 * 9 7 6 36 36 H 1.07998 * 119.97651 * 180.02562 * 16 12 11 37 37 H 1.09001 * 109.47404 * 59.99557 * 18 17 16 38 38 H 0.96709 * 113.99860 * 300.00273 * 19 18 17 39 39 H 1.48502 * 110.00042 * 179.97438 * 20 18 17 40 40 H 1.48494 * 110.00132 * 301.31646 * 20 18 17 41 41 H 1.08008 * 119.96871 * 180.02562 * 21 17 16 42 42 H 1.08009 * 120.03076 * 180.27212 * 22 21 17 43 43 H 1.09007 * 109.46797 * 299.99759 * 23 5 3 44 44 H 1.08997 * 109.47289 * 59.99364 * 23 5 3 45 45 H 1.08995 * 109.46859 * 299.99850 * 24 23 5 46 46 H 1.09000 * 109.47311 * 179.97438 * 24 23 5 47 47 H 1.08999 * 109.47198 * 299.99826 * 27 25 24 48 48 H 1.09006 * 109.47435 * 59.99886 * 27 25 24 49 49 H 1.08997 * 109.47428 * 179.97438 * 27 25 24 50 50 H 1.08995 * 109.47374 * 300.00429 * 28 25 24 51 51 H 1.08997 * 109.46856 * 179.97438 * 28 25 24 52 52 H 1.09000 * 109.47311 * 179.97438 * 29 28 25 53 53 H 1.09004 * 109.46853 * 59.99712 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1134 0.1705 -0.7913 7 6 3.8542 -1.1043 -0.4392 8 8 3.1676 -1.3371 0.5331 9 6 4.4175 -2.2404 -1.2535 10 8 4.0050 -3.4847 -0.6844 11 6 4.4301 -4.6173 -1.3034 12 6 4.0676 -5.8597 -0.8043 13 7 3.2179 -5.9533 0.4040 14 8 2.8995 -7.0445 0.8415 15 8 2.8363 -4.9391 0.9601 16 6 4.5006 -7.0097 -1.4358 17 6 5.2950 -6.9230 -2.5639 18 6 5.7654 -8.1790 -3.2511 19 8 6.5429 -8.9580 -2.3396 20 14 6.8075 -7.7261 -4.7273 21 6 5.6578 -5.6856 -3.0634 22 6 5.2228 -4.5330 -2.4391 23 6 4.0817 1.1763 1.4377 24 6 5.6097 1.2559 1.4382 25 6 6.0512 2.5878 0.8283 26 1 7.1397 2.6443 0.8282 27 6 5.4802 3.7415 1.6551 28 6 5.5358 2.6864 -0.6089 29 6 4.0079 2.6069 -0.6094 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 4.6624 0.3568 -1.5691 34 1 4.0506 -2.1703 -2.2775 35 1 5.5059 -2.1832 -1.2527 36 1 4.2183 -7.9773 -1.0479 37 1 4.9026 -8.7583 -3.5798 38 1 7.3287 -8.5042 -2.0053 39 1 7.2782 -8.9562 -5.4134 40 1 6.0197 -6.8894 -5.6677 41 1 6.2781 -5.6205 -3.9452 42 1 5.5027 -3.5667 -2.8322 43 1 3.6746 1.9981 2.0269 44 1 3.7675 0.2273 1.8721 45 1 6.0164 0.4339 0.8491 46 1 5.9769 1.1861 2.4621 47 1 4.3917 3.6849 1.6548 48 1 5.8474 3.6713 2.6791 49 1 5.7951 4.6904 1.2209 50 1 5.9426 1.8645 -1.1980 51 1 5.8500 3.6355 -1.0432 52 1 3.6407 2.6775 -1.6332 53 1 3.6011 3.4288 -0.0203 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_4549638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:52:32 Heat of formation + Delta-G solvation = -145.188567 kcal Electronic energy + Delta-G solvation = -41560.365066 eV Core-core repulsion = 36175.512397 eV Total energy + Delta-G solvation = -5384.852669 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.175 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.25699 -42.54972 -41.62211 -40.60727 -39.79992 -39.01082 -37.55913 -37.53545 -37.32837 -35.50534 -33.47761 -32.46592 -32.06068 -31.94863 -29.45023 -29.02755 -27.79104 -27.71282 -26.52144 -24.58279 -24.09509 -23.86149 -22.86292 -22.16708 -21.33585 -20.49720 -19.73881 -19.66277 -19.05349 -18.81153 -18.60454 -18.53504 -18.15703 -17.93027 -17.49361 -17.36306 -17.01037 -16.70975 -16.35806 -16.13249 -15.96924 -15.59141 -15.44467 -15.22896 -15.02538 -14.93944 -14.69710 -14.52515 -14.07536 -13.93591 -13.87043 -13.77410 -13.72115 -13.58864 -13.29236 -13.18417 -13.07348 -12.69300 -12.66862 -12.60520 -12.32951 -12.24039 -12.22804 -12.16463 -12.06354 -11.92857 -11.84756 -11.82776 -11.36224 -11.21646 -11.11961 -10.80622 -10.69610 -10.54898 -10.24944 -9.75205 -4.98601 -1.27897 -0.21117 0.19113 0.38878 0.87714 1.26338 1.29775 1.50340 1.65240 1.76295 2.03913 2.08143 2.29502 3.14533 3.21733 3.33355 3.42606 3.52330 3.54072 3.63438 3.67313 3.73903 3.82636 3.96892 4.01147 4.04941 4.06440 4.10690 4.14395 4.18843 4.28248 4.31942 4.37635 4.42613 4.49314 4.53508 4.57064 4.60396 4.66359 4.82114 4.86978 4.87877 4.89964 5.05929 5.09397 5.10452 5.13195 5.20460 5.22768 5.29291 5.31167 5.37485 5.43237 5.56853 5.79684 6.44995 6.46025 6.58268 6.74892 7.23088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.332 6.332 3 C 0.448 3.552 4 O -0.536 6.536 5 C 0.209 3.791 6 N -0.701 5.701 7 C 0.505 3.495 8 O -0.514 6.514 9 C 0.026 3.974 10 O -0.287 6.287 11 C 0.197 3.803 12 C -0.104 4.104 13 N 0.035 4.965 14 O -0.213 6.213 15 O -0.164 6.164 16 C -0.005 4.005 17 C -0.151 4.151 18 C -0.083 4.083 19 O -0.558 6.558 20 Si 0.800 3.200 21 C -0.005 4.005 22 C -0.188 4.188 23 C -0.131 4.131 24 C -0.100 4.100 25 C -0.092 4.092 26 H 0.090 0.910 27 C -0.158 4.158 28 C -0.106 4.106 29 C -0.112 4.112 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.427 0.573 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.398 0.602 39 H -0.307 1.307 40 H -0.263 1.263 41 H 0.188 0.812 42 H 0.208 0.792 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 4.936 -11.193 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.247 6.247 3 C 0.290 3.710 4 O -0.426 6.426 5 C 0.120 3.880 6 N -0.361 5.361 7 C 0.291 3.709 8 O -0.387 6.387 9 C -0.050 4.050 10 O -0.197 6.197 11 C 0.147 3.853 12 C -0.190 4.190 13 N 0.545 4.455 14 O -0.417 6.417 15 O -0.381 6.381 16 C -0.024 4.024 17 C -0.152 4.152 18 C -0.191 4.191 19 O -0.367 6.367 20 Si 0.704 3.296 21 C -0.023 4.023 22 C -0.207 4.207 23 C -0.169 4.169 24 C -0.138 4.138 25 C -0.110 4.110 26 H 0.108 0.892 27 C -0.215 4.215 28 C -0.144 4.144 29 C -0.150 4.150 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.267 0.733 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.126 0.874 38 H 0.248 0.752 39 H -0.236 1.236 40 H -0.189 1.189 41 H 0.205 0.795 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.105 0.895 52 H 0.104 0.896 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.648 4.580 -11.800 17.202 hybrid contribution -1.857 -0.387 1.061 2.173 sum 9.791 4.193 -10.739 15.125 Atomic orbital electron populations 1.23398 0.76701 1.04542 1.02112 1.86890 1.23279 1.32135 1.82370 1.24926 0.93327 0.81445 0.71274 1.90664 1.67674 1.37361 1.46876 1.20133 0.82945 0.89902 0.94991 1.45628 1.54890 1.03072 1.32485 1.20436 0.80751 0.84124 0.85635 1.90864 1.36053 1.83910 1.27866 1.23080 1.03849 0.79448 0.98671 1.86469 1.68967 1.12629 1.51630 1.18937 0.90934 0.84127 0.91344 1.20844 1.09048 0.95739 0.93334 1.43898 0.99532 1.00016 1.02101 1.94513 1.62086 1.15909 1.69213 1.94670 1.57310 1.25614 1.60481 1.20815 0.91958 0.96453 0.93204 1.20439 1.00882 0.97465 0.96460 1.25476 1.00656 0.91195 1.01753 1.86532 1.42182 1.43592 1.64358 0.93802 0.82522 0.80136 0.73140 1.21712 0.93028 0.89829 0.97683 1.21824 1.00990 1.03458 0.94402 1.21955 0.98839 1.03143 0.92987 1.21466 0.92044 0.98438 1.01812 1.21162 1.01056 0.93759 0.95017 0.89189 1.21995 1.00777 0.98702 1.00062 1.21619 0.91731 1.04413 0.96593 1.21819 0.98792 0.92358 1.02018 0.92617 0.87060 0.91607 0.73299 0.84430 0.83377 0.83502 0.87447 0.75178 1.23572 1.18948 0.79530 0.77567 0.91232 0.91402 0.90363 0.91706 0.93398 0.93075 0.91925 0.88914 0.89492 0.89579 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 113.37 1.20 1.37 16 2 O -0.33 -3.28 6.73 -43.65 -0.29 -3.58 16 3 C 0.45 3.55 6.71 71.24 0.48 4.03 16 4 O -0.54 -6.90 15.85 21.96 0.35 -6.56 16 5 C 0.21 -0.15 0.63 2.86 0.00 -0.15 16 6 N -0.70 5.09 4.03 -426.33 -1.72 3.37 16 7 C 0.51 -0.80 6.84 87.66 0.60 -0.20 16 8 O -0.51 -5.40 11.75 26.93 0.32 -5.08 16 9 C 0.03 -0.26 5.22 71.23 0.37 0.11 16 10 O -0.29 -0.54 7.68 -63.38 -0.49 -1.03 16 11 C 0.20 -0.26 6.67 22.50 0.15 -0.11 16 12 C -0.10 -0.60 6.87 36.47 0.25 -0.35 16 13 N 0.03 0.54 4.45 -46.25 -0.21 0.33 16 14 O -0.21 -3.86 18.45 18.88 0.35 -3.52 16 15 O -0.16 -3.28 17.24 25.61 0.44 -2.84 16 16 C -0.01 -0.01 9.11 22.25 0.20 0.20 16 17 C -0.15 0.98 5.39 -19.85 -0.11 0.88 16 18 C -0.08 0.55 2.82 71.24 0.20 0.75 16 19 O -0.56 2.24 12.77 -148.98 -1.90 0.33 16 20 Si 0.80 -8.68 29.78 68.60 2.04 -6.64 16 21 C -0.01 0.07 8.66 22.25 0.19 0.26 16 22 C -0.19 2.36 9.04 22.36 0.20 2.56 16 23 C -0.13 -0.20 4.23 30.59 0.13 -0.07 16 24 C -0.10 0.43 5.29 30.60 0.16 0.60 16 25 C -0.09 0.68 3.19 -10.79 -0.03 0.64 16 26 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 27 C -0.16 0.61 8.50 71.98 0.61 1.22 16 28 C -0.11 1.12 5.28 30.59 0.16 1.29 16 29 C -0.11 0.56 4.04 30.60 0.12 0.69 16 30 H 0.06 0.42 8.13 -2.39 -0.02 0.40 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.31 8.13 -2.38 -0.02 0.29 16 33 H 0.43 -6.97 7.32 -92.71 -0.68 -7.65 16 34 H 0.14 -2.40 7.65 -2.39 -0.02 -2.42 16 35 H 0.15 -2.86 7.68 -2.39 -0.02 -2.88 16 36 H 0.15 0.54 7.61 -2.91 -0.02 0.52 16 37 H 0.11 -0.48 7.96 -2.39 -0.02 -0.50 16 38 H 0.40 -5.10 8.70 -74.05 -0.64 -5.74 16 39 H -0.31 0.25 7.11 99.48 0.71 0.96 16 40 H -0.26 2.35 7.11 99.48 0.71 3.06 16 41 H 0.19 -3.84 4.87 -2.91 -0.01 -3.85 16 42 H 0.21 -4.72 6.30 -2.91 -0.02 -4.73 16 43 H 0.07 0.25 6.43 -2.38 -0.02 0.24 16 44 H 0.07 0.54 6.17 -2.39 -0.01 0.52 16 45 H 0.08 -0.54 7.60 -2.39 -0.02 -0.56 16 46 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.05 -0.05 4.81 -2.39 -0.01 -0.06 16 48 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 49 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 50 H 0.09 -1.47 6.86 -2.39 -0.02 -1.48 16 51 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 52 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 53 H 0.08 -0.07 6.16 -2.38 -0.01 -0.08 16 Total: 0.00 -41.67 421.37 3.50 -38.17 By element: Atomic # 1 Polarization: -26.40 SS G_CDS: -0.28 Total: -26.69 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.89 Total: 13.71 kcal Atomic # 7 Polarization: 5.63 SS G_CDS: -1.92 Total: 3.70 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.23 Total: -22.26 kcal Atomic # 14 Polarization: -8.68 SS G_CDS: 2.04 Total: -6.64 kcal Total: -41.67 3.50 -38.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_4549638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.016 kcal (2) G-P(sol) polarization free energy of solvation -41.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds