Wall clock time and date at job start Sat Mar 6 2021 20:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00331 * 2 1 4 4 O 1.20827 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00115 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47209 * 324.99950 * 5 3 2 7 7 C 1.34777 * 119.99746 * 60.00234 * 6 5 3 8 8 O 1.21276 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99614 * 180.02562 * 7 6 5 10 10 O 1.42895 * 109.47371 * 179.97438 * 9 7 6 11 11 C 1.35896 * 117.00438 * 180.02562 * 10 9 7 12 12 C 1.38709 * 120.05695 * 179.72982 * 11 10 9 13 13 C 1.38170 * 119.94487 * 179.76323 * 12 11 10 14 14 C 1.50693 * 119.97220 * 180.22818 * 13 12 11 15 15 O 1.42900 * 109.47234 * 65.26063 * 14 13 12 16 16 Si 1.86301 * 109.47046 * 185.25621 * 14 13 12 17 17 C 1.38240 * 120.05295 * 0.48870 * 13 12 11 18 18 C 1.38291 * 120.11188 * 359.76354 * 17 13 12 19 19 C 1.38117 * 120.05627 * 359.97438 * 18 17 13 20 20 C 1.52996 * 109.46990 * 204.99677 * 5 3 2 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 5 3 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 5 23 23 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 25 25 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 26 26 C 1.52997 * 109.47164 * 59.99836 * 25 22 21 27 27 H 1.09000 * 109.46798 * 300.00490 * 1 2 3 28 28 H 1.09004 * 109.46995 * 60.00139 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99532 * 240.00341 * 6 5 3 31 31 H 1.08996 * 109.47258 * 300.00046 * 9 7 6 32 32 H 1.09000 * 109.47247 * 59.99885 * 9 7 6 33 33 H 1.08001 * 120.02985 * 359.97438 * 12 11 10 34 34 H 1.08996 * 109.47920 * 305.25621 * 14 13 12 35 35 H 0.96704 * 114.00447 * 59.99591 * 15 14 13 36 36 H 1.48502 * 110.00086 * 180.02562 * 16 14 13 37 37 H 1.48506 * 110.00186 * 301.32101 * 16 14 13 38 38 H 1.07997 * 119.94607 * 179.74634 * 17 13 12 39 39 H 1.08005 * 119.97119 * 179.97438 * 18 17 13 40 40 H 1.08007 * 120.02681 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47368 * 60.00232 * 20 5 3 42 42 H 1.09001 * 109.47372 * 300.00388 * 20 5 3 43 43 H 1.09002 * 109.47398 * 180.02562 * 21 20 5 44 44 H 1.09001 * 109.47194 * 300.00476 * 21 20 5 45 45 H 1.09002 * 109.46716 * 60.00091 * 24 22 21 46 46 H 1.09000 * 109.47486 * 180.02562 * 24 22 21 47 47 H 1.09001 * 109.47362 * 300.00732 * 24 22 21 48 48 H 1.09001 * 109.47002 * 299.99574 * 25 22 21 49 49 H 1.09000 * 109.47050 * 179.97438 * 25 22 21 50 50 H 1.09002 * 109.47045 * 180.02562 * 26 25 22 51 51 H 1.09001 * 109.47375 * 59.99966 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1129 0.1706 0.7933 7 6 3.8538 -1.1043 0.4413 8 8 3.1678 -1.3375 -0.5312 9 6 4.4155 -2.2401 1.2571 10 8 4.0037 -3.4845 0.6881 11 6 4.4275 -4.6169 1.3084 12 6 4.0603 -5.8594 0.8130 13 6 4.4966 -7.0094 1.4427 14 6 4.1023 -8.3596 0.9020 15 8 4.6856 -8.5444 -0.3894 16 14 4.7100 -9.6915 2.0542 17 6 5.2900 -6.9222 2.5713 18 6 5.6531 -5.6846 3.0703 19 6 5.2241 -4.5322 2.4413 20 6 4.0070 2.6072 0.6100 21 6 5.5349 2.6875 0.6101 22 6 6.0508 2.5886 -0.8269 23 1 7.1393 2.6454 -0.8270 24 6 5.4795 3.7417 -1.6544 25 6 5.6101 1.2562 -1.4364 26 6 4.0822 1.1759 -1.4364 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 4.6612 0.3572 1.5714 31 1 5.5040 -2.1832 1.2580 32 1 4.0472 -2.1693 2.2805 33 1 3.4368 -5.9280 -0.0661 34 1 3.0168 -8.4161 0.8218 35 1 5.6519 -8.5064 -0.3937 36 1 4.3280 -11.0281 1.5318 37 1 6.1856 -9.6052 2.1970 38 1 5.6267 -7.8221 3.0645 39 1 6.2728 -5.6192 3.9525 40 1 5.5076 -3.5659 2.8317 41 1 3.6391 2.6779 1.6337 42 1 3.6003 3.4287 0.0203 43 1 5.8489 3.6366 1.0447 44 1 5.9419 1.8660 1.1996 45 1 5.7935 4.6909 -1.2202 46 1 5.8467 3.6710 -2.6783 47 1 4.3910 3.6845 -1.6544 48 1 6.0172 0.4347 -0.8469 49 1 5.9773 1.1859 -2.4603 50 1 3.7683 0.2265 -1.8703 51 1 3.6752 1.9975 -2.0259 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_4860298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:52:46 Heat of formation + Delta-G solvation = -148.801425 kcal Electronic energy + Delta-G solvation = -34372.989499 eV Core-core repulsion = 29818.996599 eV Total energy + Delta-G solvation = -4553.992899 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.57781 -41.38031 -40.57036 -39.62215 -38.80477 -37.55617 -37.31252 -35.54007 -32.58458 -32.42040 -31.98923 -31.34693 -29.18985 -28.84835 -27.72096 -26.78363 -24.54369 -23.94578 -23.65725 -22.94355 -21.82291 -21.32708 -19.68400 -19.27640 -18.85940 -18.63076 -18.02759 -17.68131 -17.50936 -17.27624 -17.16091 -16.80543 -16.69839 -16.22858 -15.95199 -15.54274 -15.46005 -15.13899 -14.96593 -14.89093 -14.68953 -14.54180 -14.12290 -14.05798 -13.93455 -13.79314 -13.69159 -13.42236 -13.30573 -13.09548 -12.99390 -12.71950 -12.65327 -12.55391 -12.15395 -12.03428 -11.98747 -11.87029 -11.85110 -11.57628 -11.39320 -11.25359 -11.15271 -10.73080 -10.64701 -10.29175 -9.92143 -9.25419 -4.90169 0.23138 0.42135 0.86744 1.28778 1.45051 1.50504 1.61823 1.73316 1.97229 2.55425 2.69040 3.23414 3.42225 3.49061 3.57634 3.61165 3.68659 3.86559 3.97560 4.00349 4.04569 4.05187 4.12795 4.14258 4.15797 4.18357 4.24619 4.27159 4.38515 4.39178 4.45869 4.55552 4.55838 4.57792 4.67821 4.78634 4.83701 4.86809 5.00590 5.01858 5.05799 5.09235 5.16646 5.25577 5.27397 5.27924 5.33970 5.39189 5.39765 5.47587 5.53852 5.71862 6.28798 6.45720 6.47465 6.55741 7.16451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.206 3.794 6 N -0.702 5.702 7 C 0.511 3.489 8 O -0.522 6.522 9 C 0.041 3.959 10 O -0.319 6.319 11 C 0.117 3.883 12 C -0.149 4.149 13 C -0.081 4.081 14 C -0.094 4.094 15 O -0.551 6.551 16 Si 0.784 3.216 17 C -0.160 4.160 18 C -0.071 4.071 19 C -0.201 4.201 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.092 4.092 23 H 0.088 0.912 24 C -0.157 4.157 25 C -0.101 4.101 26 C -0.130 4.130 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.425 0.575 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.386 0.614 36 H -0.307 1.307 37 H -0.274 1.274 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 1.740 8.811 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.291 3.709 4 O -0.424 6.424 5 C 0.118 3.882 6 N -0.361 5.361 7 C 0.297 3.703 8 O -0.396 6.396 9 C -0.037 4.037 10 O -0.232 6.232 11 C 0.072 3.928 12 C -0.168 4.168 13 C -0.082 4.082 14 C -0.202 4.202 15 O -0.359 6.359 16 Si 0.689 3.311 17 C -0.177 4.177 18 C -0.089 4.089 19 C -0.220 4.220 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.107 0.893 24 C -0.214 4.214 25 C -0.139 4.139 26 C -0.168 4.168 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.265 0.735 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.235 0.765 36 H -0.235 1.235 37 H -0.201 1.201 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.642 1.123 7.848 9.731 hybrid contribution 0.063 0.538 -1.171 1.290 sum 5.705 1.661 6.677 8.938 Atomic orbital electron populations 1.23433 0.76506 1.04752 1.02167 1.86886 1.23471 1.32102 1.82386 1.24846 0.93195 0.81498 0.71320 1.90663 1.67595 1.37297 1.46816 1.20170 0.83187 0.89834 0.95015 1.45676 1.54824 1.03259 1.32387 1.20471 0.80342 0.84089 0.85401 1.90779 1.36603 1.84104 1.28101 1.22664 1.02424 0.80625 0.97989 1.86121 1.71367 1.12625 1.53083 1.19164 0.95045 0.85732 0.92905 1.20297 1.04379 0.89975 1.02162 1.20097 0.97632 0.94564 0.95903 1.25443 1.03506 1.00063 0.91168 1.86586 1.26327 1.94214 1.28787 0.93859 0.79639 0.72900 0.84745 1.21235 1.00340 0.99411 0.96749 1.21320 0.97277 0.90819 0.99449 1.21633 1.02044 1.01736 0.96573 1.21818 0.98656 0.92426 1.02071 1.21619 0.91911 1.04299 0.96656 1.21159 1.01012 0.93865 0.94989 0.89337 1.21987 1.00830 0.98567 1.00033 1.21470 0.92234 0.98350 1.01816 1.21953 0.98688 1.03227 0.92940 0.91655 0.92525 0.86705 0.73503 0.85649 0.86096 0.87024 0.86435 0.76450 1.23526 1.20066 0.83638 0.82117 0.82155 0.89641 0.89721 0.89382 0.89384 0.91865 0.92944 0.93258 0.90831 0.91500 0.91373 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 113.37 1.20 1.34 16 2 O -0.33 -3.34 6.73 -43.67 -0.29 -3.63 16 3 C 0.45 3.82 6.71 71.24 0.48 4.30 16 4 O -0.53 -7.00 15.84 21.96 0.35 -6.65 16 5 C 0.21 0.14 0.63 2.86 0.00 0.14 16 6 N -0.70 3.14 4.04 -426.33 -1.72 1.42 16 7 C 0.51 0.62 6.84 87.66 0.60 1.22 16 8 O -0.52 -5.97 11.75 26.94 0.32 -5.66 16 9 C 0.04 -0.18 5.22 71.24 0.37 0.19 16 10 O -0.32 -1.67 9.67 -73.35 -0.71 -2.38 16 11 C 0.12 0.35 6.69 22.51 0.15 0.50 16 12 C -0.15 -0.84 9.63 22.37 0.22 -0.62 16 13 C -0.08 -0.13 5.35 -19.88 -0.11 -0.23 16 14 C -0.09 -0.12 2.80 71.23 0.20 0.08 16 15 O -0.55 -2.80 12.84 -148.98 -1.91 -4.71 16 16 Si 0.78 -1.70 29.88 68.60 2.05 0.35 16 17 C -0.16 0.42 8.67 22.28 0.19 0.62 16 18 C -0.07 0.36 10.04 22.25 0.22 0.58 16 19 C -0.20 0.76 9.04 22.36 0.20 0.96 16 20 C -0.11 0.40 4.04 30.59 0.12 0.53 16 21 C -0.11 0.93 5.28 30.59 0.16 1.09 16 22 C -0.09 0.54 3.20 -10.79 -0.03 0.51 16 23 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 24 C -0.16 0.50 8.50 71.98 0.61 1.11 16 25 C -0.10 0.29 5.29 30.60 0.16 0.45 16 26 C -0.13 -0.31 4.23 30.59 0.13 -0.18 16 27 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 28 H 0.06 0.37 8.13 -2.38 -0.02 0.35 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.43 -5.33 7.32 -92.71 -0.68 -6.00 16 31 H 0.13 -1.40 7.66 -2.39 -0.02 -1.42 16 32 H 0.12 -1.23 7.66 -2.39 -0.02 -1.25 16 33 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.12 0.10 7.96 -2.39 -0.02 0.08 16 35 H 0.39 -0.45 8.70 -74.05 -0.64 -1.10 16 36 H -0.31 -1.85 7.11 99.48 0.71 -1.14 16 37 H -0.27 -0.06 7.01 99.48 0.70 0.64 16 38 H 0.15 -0.96 4.84 -2.91 -0.01 -0.97 16 39 H 0.16 -1.78 8.06 -2.91 -0.02 -1.81 16 40 H 0.16 -1.73 6.30 -2.91 -0.02 -1.75 16 41 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.08 -0.01 6.16 -2.39 -0.01 -0.02 16 43 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H 0.09 -1.13 6.86 -2.39 -0.02 -1.15 16 45 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.05 -0.03 4.81 -2.39 -0.01 -0.04 16 48 H 0.07 -0.32 7.61 -2.39 -0.02 -0.34 16 49 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.07 0.57 6.17 -2.39 -0.01 0.55 16 51 H 0.07 0.28 6.43 -2.39 -0.02 0.26 16 Total: 0.00 -27.47 395.39 2.64 -24.83 By element: Atomic # 1 Polarization: -15.84 SS G_CDS: -0.32 Total: -16.16 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.88 Total: 12.59 kcal Atomic # 7 Polarization: 3.14 SS G_CDS: -1.72 Total: 1.42 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -2.25 Total: -23.03 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.05 Total: 0.35 kcal Total: -27.47 2.64 -24.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_4860298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.968 kcal (2) G-P(sol) polarization free energy of solvation -27.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds